CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG93437
KRH18559
KRH18561

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G30470.1	KRG93437	AT3G01320.1	19962994
AT2G30470.1	KRH18559	AT3G01320.1	19962994
AT2G30470.1	KRH18561	AT3G01320.1	19962994

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH17186	Soybean	nucleus	85.79	85.08
KRH37982	Soybean	cytosol, nucleus, plastid	4.32	70.45
KRH30646	Soybean	nucleus	62.4	49.18
KRG98129	Soybean	nucleus	61.98	47.59
GSMUA_Achr5P27930_001	Banana	nucleus	33.98	42.07
Bra018313.1-P	Field mustard	nucleus	43.45	39.49
CDX84832	Canola	nucleus	43.18	39.49
CDX97828	Canola	nucleus	41.92	39.45
CDY02066	Canola	nucleus	43.04	39.41
Bra022801.1-P	Field mustard	nucleus	42.9	39.34
CDY10738	Canola	nucleus	42.9	39.14
Bra021635.1-P	Field mustard	nucleus	42.06	39.02
Solyc06g082520.2.1	Tomato	nucleus	45.82	38.93
AT2G30470.1	Thale cress	nucleus	42.62	38.73
CDY23997	Canola	nucleus	42.62	38.59
CDY29672	Canola	nucleus	41.92	38.2
VIT_06s0004g08100.t01	Wine grape	nucleus	45.96	37.97
KRH65426	Soybean	nucleus	46.52	36.91
KRH76125	Soybean	nucleus	46.52	36.78
GSMUA_Achr8P01750_001	Banana	nucleus	42.2	35.36
Os07t0679700-01	Rice	nucleus	44.29	33.51
TraesCS2D01G105300.1	Wheat	nucleus	42.34	33.37
TraesCS2A01G105600.1	Wheat	nucleus	43.31	32.77
EER99914	Sorghum	nucleus	43.45	32.6
TraesCS2B01G122500.1	Wheat	nucleus	42.9	32.42
Zm00001d022440_P005	Maize	plastid	43.31	32.29
KRH10760	Soybean	nucleus	36.91	30.18
KRH21568	Soybean	nucleus	36.35	29.69
HORVU2Hr1G017760.4	Barley	plastid	42.62	29.54
Zm00001d007173_P003	Maize	mitochondrion, nucleus	40.67	28.85
Zm00001d037893_P001	Maize	mitochondrion	8.91	22.86
Zm00001d045970_P001	Maize	mitochondrion	7.94	22.09
Zm00001d038148_P001	Maize	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	8.91	21.84
KRG94672	Soybean	nucleus	7.94	17.17
KRH06856	Soybean	nucleus	7.52	15.98
Zm00001d029836_P001	Maize	plastid	1.81	14.77
KRG89627	Soybean	nucleus	7.52	14.32
KRG89628	Soybean	plastid	7.24	13.79
PGSC0003DMT400057590	Potato	nucleus	8.5	13.2
KRG99861	Soybean	nucleus	10.86	10.29
KRH46807	Soybean	nucleus	10.72	10.12

Protein Annotations

EntrezGene:100782543	MapMan:15.5.5.4	Gene3D:2.40.330.10	UniProt:A0A0R0L085	EMBL:ACUP02001249	InterPro:B3_DNA-bd
InterPro:DNA-bd_pseudobarrel_sf	EnsemblPlantsGene:GLYMA_02G236400	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR003340
InterPro:IPR015300	EnsemblPlants:KRH72829	ProteinID:KRH72829	ProteinID:KRH72829.1	PFAM:PF02362	PFscan:PS50863
PANTHER:PTHR23336	PANTHER:PTHR23336:SF28	SMART:SM01019	SUPFAM:SSF101936	UniParc:UPI000233782C	SEG:seg

Description

hypothetical protein

Coordinates

chr2:-:42391815..42399602

Molecular Weight (calculated)

80094.2 Da

IEP (calculated)

6.928

GRAVY (calculated)

-0.660

Length

718 amino acids

Sequence
(BLAST)

001: MEVEVCMNVS CKNGYAREWK KGWPLRSGGF ARLCHKCGSA YENLIFCQKF HLHQTGWREC SFCNKTLHCG CIASSSMFEY LDYGGIGCVT CVKTSQLNLI
101: RDTENTIGSV RSIKNNASDR HTEHMDSRLL VDGAGKGNLM QLRRHVEASE SSRWQRAERD GIDSCIGPNR QDDRRFSNVM KLSGHSLTFT TLDNNRPTWE
201: TQTMHKSSSQ NMSLGTSSGN SVLPSALDIA ERRLEGKTSF CPFHQGQRLF SISKPLMDGI AINLEASKGV ISQERVARPP ANGKTKNLLL SRYWPRITDQ
301: ELEKLSGDLK STIVPLFEKV LSASDAGRIG RLVLPKSCAE AYFPPISQSE GLPLQFKDVK GNDWTFQFRF WPNNNSRMYV LEGVTPCMQA MQLNAGDTVM
401: FSRIDPGGKF VMGSRRASDS IDTQEASTFS HSNDFATKEA TFSGATANLH SGNSYPDLLR TTKGNGEPYL NRYSEHLRFS TETANCLQTE NDMELRVTWE
501: EAQDLLHPPP CVKPSVETIE DKEFEEFEEP PVFGKGTTIN DHPSGSLSSA SEEMSSRELE NILVTSKDTK KRRIMEKPES IQEHESVGLD DHIDPTDSSA
601: GATTKHPRHR SGCTCIVCIQ PPSGKGRHRP TCTCLACMTV RRRFKTLMMR KKQRESDATQ KDQIHHSDEG DTNGGASRDG AIASNLENEG SLNRMDELGA
701: GQIDLNSHPD HEDMQVAM

Best Arabidopsis Sequence Match ( AT2G30470.1 )
(BLAST)

001: MFEVKMGSKM CMNASCGTTS TVEWKKGWPL RSGLLADLCY RCGSAYESSL FCEQFHKDQS GWRECYLCSK RLHCGCIASK VTIELMDYGG VGCSTCACCH
101: QLNLNTRGEN PGVFSRLPMK TLADRQHVNG ESGGRNEGDL FSQPLVMGGD KREEFMPHRG FGKLMSPEST TTGHRLDAAG EMHESSPLQP SLNMGLAVNP
201: FSPSFATEAV EGMKHISPSQ SNMVHCSASN ILQKPSRPAI STPPVASKSA QARIGRPPVE GRGRGHLLPR YWPKYTDKEV QQISGNLNLN IVPLFEKTLS
301: ASDAGRIGRL VLPKACAEAY FPPISQSEGI PLKIQDVRGR EWTFQFRYWP NNNSRMYVLE GVTPCIQSMM LQAGDTVTFS RVDPGGKLIM GSRKAANAGD
401: MQGCGLTNGT STEDTSSSGV TENPPSINGS SCISLIPKEL NGMPENLNSE TNGGRIGDDP TRVKEKKRTR TIGAKNKRLL LHSEESMELR LTWEEAQDLL
501: RPSPSVKPTI VVIEEQEIEE YDEPPVFGKR TIVTTKPSGE QERWATCDDC SKWRRLPVDA LLSFKWTCID NVWDVSRCSC SAPEESLKEL ENVLKVGREH
601: KKRRTGESQA AKSQQEPCGL DALASAAVLG DTIGEPEVAT TTRHPRHRAG CSCIVCIQPP SGKGRHKPTC GCTVCSTVKR RFKTLMMRRK KKQLERDVTA
701: AEDKKKKDME LAESDKSKEE KEVNTARIDL NSDPYNKEDV EAVAVEKEES RKRAIGQCSG VVAQDASDVL GVTELEGEGK NVREEPRVSS

Arabidopsis Description

VAL1B3 domain-containing transcription repressor VAL1 [Source:UniProtKB/Swiss-Prot;Acc:Q8W4L5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.