CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH10760	Soybean	nucleus	97.04	97.15
KRH37982	Soybean	cytosol, nucleus, plastid	4.21	84.09
VIT_00s0181g00260.t01	Wine grape	nucleus	41.75	63.83
GSMUA_Achr8P03800_001	Banana	nucleus	48.92	52.63
GSMUA_Achr7P00120_001	Banana	nucleus, plastid	53.24	52.53
GSMUA_Achr4P23790_001	Banana	nucleus	50.28	49.72
Solyc02g079020.2.1	Tomato	nucleus	54.38	45.83
TraesCS2B01G231800.1	Wheat	plastid	48.81	44.69
TraesCS2A01G204300.1	Wheat	plastid	48.92	44.61
TraesCS2D01G211600.2	Wheat	plastid	48.58	44.29
Os07t0563300-01	Rice	nucleus	48.12	44.29
Zm00001d021790_P010	Maize	nucleus	48.24	43.85
HORVU2Hr1G040410.4	Barley	nucleus, plastid	48.69	43.81
KXG36480	Sorghum	nucleus	48.12	43.7
Zm00001d006597_P003	Maize	plastid	47.67	43.42
AT4G21550.1	Thale cress	nucleus, plastid	34.13	41.96
Bra013535.1-P	Field mustard	nucleus	32.54	40.92
CDX82834	Canola	nucleus	33.56	40.8
KRH65426	Soybean	nucleus	41.52	40.33
CDX79071	Canola	nucleus	32.99	40.17
PGSC0003DMT400057590	Potato	nucleus	20.71	39.39
KRH76125	Soybean	nucleus	40.61	39.32
KRH30646	Soybean	nucleus	39.36	37.98
HORVU2Hr1G040400.1	Barley	nucleus	17.86	37.2
KRH17186	Soybean	nucleus	30.6	37.15
KRG98129	Soybean	nucleus	39.25	36.9
KRH72829	Soybean	nucleus	29.69	36.35
KRG94672	Soybean	nucleus	6.83	18.07
KRH06856	Soybean	nucleus	6.71	17.46
KRG89627	Soybean	nucleus	7.05	16.45
KRG89628	Soybean	plastid	6.83	15.92
KRG99861	Soybean	nucleus	9.1	10.55
KRH46807	Soybean	nucleus	8.87	10.25

Protein Annotations

EntrezGene:100782114	MapMan:15.5.5.4	Gene3D:2.40.330.10	Gene3D:3.30.40.100	EMBL:ACUP02008360	InterPro:B3_DNA-bd
ncoils:Coil	InterPro:DNA-bd_pseudobarrel_sf	EnsemblPlantsGene:GLYMA_13G245900	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058
GO:GO:0009987	UniProt:I1M2C3	InterPro:IPR003340	InterPro:IPR011124	InterPro:IPR015300	EnsemblPlants:KRH21568
ProteinID:KRH21568	ProteinID:KRH21568.1	PFAM:PF02362	PFAM:PF07496	PFscan:PS50863	PFscan:PS51050
PANTHER:PTHR23336	PANTHER:PTHR23336:SF10	SMART:SM01019	SUPFAM:SSF101936	UniParc:UPI00029594EA	InterPro:Znf_CW
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:-:35481859..35492023

Molecular Weight (calculated)

96874.4 Da

IEP (calculated)

7.449

GRAVY (calculated)

-0.651

Length

879 amino acids

Sequence
(BLAST)

001: MASASSSSSK LCFNSDCKEL KSERPKKGWR LRSGELAELC DRCGSAFEEG RFCEIFHSNA SGWRSCETCL KRIHCGCIVS SHAFMLLDPG GIECYACARK
101: SIILPSNLPW PQSFSLQNRL SDRLRDLSAK GWSQLAGSGP VPWKQAPSLF NSASSSDLIP EVPSLVELSN SFDKMYCNER LPASALEKKN EDLSGIPVNW
201: NVKLGSREMM LMNGMRNEDK SSSCLNMCQQ PSSLKEESSP QPFGLAVPNS CQNERNGQLG VTGSHPQQTP PPPGKQFNGT MHLAPDSSGE AQIRNGRPRA
301: DSRGRNQLLP RYWPRCTDLE LQQISIDSNS VITPLFQKTL SASDAGRIGR LVLPKKCAET YFPPISQPEG LPLKILDAKG KEWIFQFRFW PNNNSRMYVL
401: EGVTPCIQSM QLQAGDTVTF SRLEPEGRLV MGFRKASSVM PSDQDNETKT GNGFSAHGEV ELADPNSWSK VDKSGYIAKE ALGSKSLISR KRKSNILSSK
501: SKRLRIENED LIELKITWQE AQGLLRPPPS HIPSIVVIEG FEFEEYEEAP VLGKPTIFTS DSVGEKIQWA QCEDCFKWRK LPASALLPSK WTCSDNSWDP
601: ERFSCSAAQE LTAEQLENLL PPCNSAVPKK MKATKQDPDN AEALEGLDTL ANLAILGEGE ALPASAQATT KHPRHRPGCS CIVCIQPPSG KGPKHKQTCT
701: CNVCLTVKRR FRTLMLRREK KQSEKEAETT RKKQQQQHPL PLPSSEILLD EDSLPCSNTG DSSPNQNKEG NDGSDDDPSR IKSSASPFKG KIDLNIQPER
801: EEELSPGSDS GGMMKLLHDA TERYLKQQTV NSGTGDSSGS QSQLVGDAMR EDKLSNGVAH GSSSHNTDKE HAQSLPMNV

Best Arabidopsis Sequence Match ( AT4G21550.1 )
(BLAST)

001: MLSSSSMSSS SLSARFCFNH ECFEFKLDHC RPGWRLRSGD FVDLCDRCAS AYEQGKFCDV FHQRASGWRC CESCGKRIHC GCIASASAYT LMDAGGIECL
101: ACARKKFALG PNFSPSPSFL FQSPISEKFK DLSINWSSST RSNQISYQPP SCLDPSVLQF DFRNRGGNNE FSQPASKERV TACTMEKKRG MNDMIGKLMS
201: ENSKHYRVSP FPNVNVYHPL ISLKEGPCGT QLAFPVPITT PIEKTGHSRL DGSNLWHTRN SSPLSRLHND LNGGADSPFE SKSRNVMAHL ETPGKYQVVP
301: RFWPKVSYKN QVLQNQSKES ESVVTPLFEK ILSATDTGKR LVLPKKYAEA FLPQLSHTKG VPLTVQDPMG KEWRFQFRFW PSSKGRIYVL EGVTPFIQTL
401: QLQAGDTVIF SRLDPERKLI LGFRKASITQ SSDQADPADM HSPFEVKKSA YITKETPGVE CSSGKKKSSM MITRSKRQKV EKGDDNLLKL TWEEAQGFLL
501: PPPNLTPSRV VIEDYEFEEY EEAPIIGKPT DVAGFRSTCT EVEGLLISPT TTKHPRHRDG CTCIICIQSP SGIGPKHDRC CSCAVCDTNK RRRRSLLLRR
601: EKKQMEKEDN ARKLLEQLNS DNGLHQSANN SENHERHASP LKVQLDLNFK PEKDEESLPG SNKTTKSETL PHDDTVKSSF TSPSSSSAHS QNNKEDEGKL
701: KTTTEIADTT TTSSM

Arabidopsis Description

VAL3VP1/ABI3-like 3 [Source:TAIR;Acc:AT4G21550]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.