CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra013535.1-P	Field mustard	nucleus	96.68	99.86
CDX82834	Canola	nucleus	95.01	94.88
AT4G21550.1	Thale cress	nucleus, plastid	62.6	63.22
VIT_00s0181g00260.t01	Wine grape	nucleus	30.06	37.74
CDX68809	Canola	cytosol	6.09	33.59
KRH21568	Soybean	nucleus	40.17	32.99
KRH10760	Soybean	nucleus	40.03	32.92
GSMUA_Achr8P03800_001	Banana	nucleus	36.15	31.95
GSMUA_Achr4P23790_001	Banana	nucleus	36.84	29.92
GSMUA_Achr7P00120_001	Banana	nucleus, plastid	36.43	29.52
CDX72340	Canola	nucleus	31.16	29.26
CDY13468	Canola	nucleus	31.16	29.22
CDX97828	Canola	nucleus	30.33	28.7
CDY10738	Canola	nucleus	31.16	28.59
CDY02066	Canola	nucleus	30.75	28.32
CDX84832	Canola	nucleus	30.47	28.03
CDY29672	Canola	nucleus	30.47	27.92
Os07t0563300-01	Rice	nucleus	36.57	27.64
CDY23997	Canola	nucleus	29.5	26.86
Zm00001d006597_P003	Maize	plastid	35.87	26.84
KXG36480	Sorghum	nucleus	35.73	26.65
Zm00001d021790_P010	Maize	nucleus	35.6	26.58
HORVU2Hr1G040400.1	Barley	nucleus	15.51	26.54
TraesCS2A01G204300.1	Wheat	plastid	35.18	26.35
TraesCS2B01G231800.1	Wheat	plastid	34.9	26.25
TraesCS2D01G211600.2	Wheat	plastid	35.04	26.24
HORVU2Hr1G040410.4	Barley	nucleus, plastid	35.04	25.9
Solyc02g079020.2.1	Tomato	nucleus	36.29	25.12
CDY34212	Canola	nucleus	8.03	18.83
CDY28525	Canola	nucleus	8.03	18.77
CDY13657	Canola	nucleus	8.03	18.41
CDY53003	Canola	nucleus	7.89	18.15
CDY15679	Canola	nucleus	6.65	13.75
CDY66878	Canola	nucleus	6.79	13.61
CDX94608	Canola	nucleus	6.51	13.47
CDY46611	Canola	nucleus	6.65	13.37
PGSC0003DMT400057590	Potato	nucleus	8.03	12.55
CDY15121	Canola	nucleus	9.83	10.57
CDX93029	Canola	nucleus	10.39	10.45

Protein Annotations

EnsemblPlants:CDX79071	EnsemblPlantsGene:GSBRNA2T00131605001	Gene3D:2.40.330.10	GO:A0A078CPG1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	InterPro:IPR003340	InterPro:IPR015300
PANTHER:PTHR23336	PANTHER:PTHR23336:SF10	PFAM:PF02362	PFscan:PS50863	ProteinID:CDX79071	ProteinID:CDX79071.1
SEG:seg	SMART:SM01019	SUPFAM:SSF101936	UniParc:UPI0004EE7E40	MapMan:15.5.5.4	:

Description

BnaA01g11380D

Coordinates

chrLK031816:+:1618782..1624147

Molecular Weight (calculated)

80674.7 Da

IEP (calculated)

8.146

GRAVY (calculated)

-0.756

Length

722 amino acids

Sequence
(BLAST)

001: MLPFPSSSSM TPSSYSARFC FNRECPDFNR ECYRPGWRLR NGDFADLCNR CATAYEQGRF CDIFHQRASG WRCCESCGKR IHCGCVVSAP AFTLLDAGGI
101: ECLTCARKKV SVGPNFRPPP PSFLFQSPIA DKFQDLSIDW NSSTRSYRPP NLSGPSILQS DLHNREDCYE FNQPTSKDKA TAYSTEKHRG MNDLMGRLMS
201: VNSNNHTNSI LYNQKAGPNC KVPTCPNVNA YPPLISLKEG PLGAQRAFPV TTPVETNGHL GLGGRYLWHK DNSSPLSHLH NDVNRGADSP LESKNWNFGI
301: HLDTPGKYQV VPRYSPKIPY KNQVLQNLSN ESVSVVTPLF EKILSVSDAG RVGRMVLPKK CAEAFLPQIS QTDGVPLTVH DSTGKEWTFQ FRFWVNNNSR
401: MYFLEGITPC IQSMQLQAGD TVIFSRVDPE KKLIMGFRKA SVAQSSVQET ELNNNRESCT NGDAEPIDIH PPNGKKKSSM TTTRSKRQKV EKGELSEVKL
501: TWEEAQGFIL PPPNLTPSII TIEGIEFEEY EDAPIIGKPN TGFGSTCSAN GRLLAEQDDE EAKDEAEGLL MSPKSSSKHP RHRNGCTCIV CLQSPSGSSP
601: KHGRRCSCTV CDTVRRRRET LLQRKKKQQQ IEVENKTHKE LESPNSDEER HQSANNSGTT SKDHEPSKAQ IDLNFQPEKD EESPPPRSKT TTKDKSLHHD
701: EASFKPPRSS SSAHNKLHVE SF

Best Arabidopsis Sequence Match ( AT4G21550.1 )
(BLAST)

001: MLSSSSMSSS SLSARFCFNH ECFEFKLDHC RPGWRLRSGD FVDLCDRCAS AYEQGKFCDV FHQRASGWRC CESCGKRIHC GCIASASAYT LMDAGGIECL
101: ACARKKFALG PNFSPSPSFL FQSPISEKFK DLSINWSSST RSNQISYQPP SCLDPSVLQF DFRNRGGNNE FSQPASKERV TACTMEKKRG MNDMIGKLMS
201: ENSKHYRVSP FPNVNVYHPL ISLKEGPCGT QLAFPVPITT PIEKTGHSRL DGSNLWHTRN SSPLSRLHND LNGGADSPFE SKSRNVMAHL ETPGKYQVVP
301: RFWPKVSYKN QVLQNQSKES ESVVTPLFEK ILSATDTGKR LVLPKKYAEA FLPQLSHTKG VPLTVQDPMG KEWRFQFRFW PSSKGRIYVL EGVTPFIQTL
401: QLQAGDTVIF SRLDPERKLI LGFRKASITQ SSDQADPADM HSPFEVKKSA YITKETPGVE CSSGKKKSSM MITRSKRQKV EKGDDNLLKL TWEEAQGFLL
501: PPPNLTPSRV VIEDYEFEEY EEAPIIGKPT DVAGFRSTCT EVEGLLISPT TTKHPRHRDG CTCIICIQSP SGIGPKHDRC CSCAVCDTNK RRRRSLLLRR
601: EKKQMEKEDN ARKLLEQLNS DNGLHQSANN SENHERHASP LKVQLDLNFK PEKDEESLPG SNKTTKSETL PHDDTVKSSF TSPSSSSAHS QNNKEDEGKL
701: KTTTEIADTT TTSSM

Arabidopsis Description

VAL3VP1/ABI3-like 3 [Source:TAIR;Acc:AT4G21550]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.