Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra032890.1-P | Field mustard | nucleus | 98.33 | 99.72 |
| CDY66878 | Canola | nucleus | 95.82 | 95.56 |
| CDX94608 | Canola | nucleus | 74.09 | 76.22 |
| CDY15679 | Canola | nucleus | 73.54 | 75.64 |
| AT1G28300.1 | Thale cress | nucleus | 69.08 | 68.32 |
| GSMUA_Achr3P32440_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 18.66 | 33.0 |
| GSMUA_Achr8P18070_001 | Banana | nucleus | 18.66 | 32.21 |
| TraesCS3D01G249100.1 | Wheat | plastid | 21.73 | 25.91 |
| TraesCS3B01G278000.1 | Wheat | plastid | 21.73 | 25.83 |
| Os01t0713600-01 | Rice | plastid | 19.78 | 24.57 |
| CDY13657 | Canola | nucleus | 20.61 | 23.49 |
| CDY53003 | Canola | nucleus | 20.33 | 23.25 |
| CDY34212 | Canola | nucleus | 19.22 | 22.4 |
| CDY28525 | Canola | nucleus | 19.22 | 22.33 |
| TraesCS3A01G249100.2 | Wheat | nucleus | 22.01 | 20.36 |
| HORVU3Hr1G067350.2 | Barley | nucleus | 20.61 | 19.95 |
| KRG89628 | Soybean | plastid | 20.61 | 19.63 |
| KXG33236 | Sorghum | mitochondrion, nucleus | 21.17 | 19.39 |
| Zm00001d011712_P001 | Maize | mitochondrion | 20.89 | 19.13 |
| KRG89627 | Soybean | nucleus | 20.06 | 19.1 |
| CDY15121 | Canola | nucleus | 25.35 | 13.54 |
| CDX93029 | Canola | nucleus | 25.35 | 12.67 |
| CDX79071 | Canola | nucleus | 13.37 | 6.65 |
| CDX82834 | Canola | nucleus | 13.37 | 6.64 |
| CDY02066 | Canola | nucleus | 13.93 | 6.38 |
| CDX72340 | Canola | nucleus | 13.65 | 6.37 |
| CDX84832 | Canola | nucleus | 13.93 | 6.37 |
| CDY13468 | Canola | nucleus | 13.65 | 6.36 |
| CDY10738 | Canola | nucleus | 13.93 | 6.35 |
| CDY29672 | Canola | nucleus | 13.93 | 6.35 |
| CDX97828 | Canola | nucleus | 13.37 | 6.29 |
| CDY23997 | Canola | nucleus | 13.65 | 6.18 |
| CDX68809 | Canola | cytosol | 0.84 | 2.29 |
Protein Annotations
| MapMan:15.5.5.5 | Gene3D:2.40.330.10 | GO:A0A078I9V0 | UniProt:A0A078I9V0 | InterPro:B3_DNA-bd | EnsemblPlants:CDY46611 |
| ProteinID:CDY46611 | ProteinID:CDY46611.1 | InterPro:DNA-bd_pseudobarrel_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| EnsemblPlantsGene:GSBRNA2T00085888001 | InterPro:IPR003340 | InterPro:IPR015300 | PFAM:PF02362 | PFscan:PS50863 | PANTHER:PTHR31140 |
| PANTHER:PTHR31140:SF1 | SMART:SM01019 | SUPFAM:SSF101936 | UniParc:UPI0004EDB15A | SEG:seg | : |
Description
BnaA09g27380DBnaA09g27380D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I9V0]
Coordinates
chrLK032679:+:20527..24221
Molecular Weight (calculated)
41029.0 Da
IEP (calculated)
6.137
GRAVY (calculated)
-0.748
Length
359 amino acids
Sequence
(BLAST)
(BLAST)
001: MDNFLPFSSS NANFVQELSM DLNNNRSRLS TFPTYDHHHQ AQPHSLQPYS YVACPVDQTA AMNPQIPVTQ TGSEFGSLVC NPGFGQARGG FLDPHTAKMA
101: RINRKKAMIR SRNNSSPNSS SNELVGSRRQ VVLTMKNNAE IAARKDLYRY PSFDNKKLRV LLVKHLKNSD VGSLGRIVLP KREAEGNLPE LSTKEGMIVD
201: MRDADSMQNW SFKYKFWSNN KSRMYVLENT GQFVTEKRVE IGDFLTIYED ESKNLYFSIR KHADKPNEGR EDESMEANDM NFYEDIAFDF IPKDEDEDSI
301: AMLIGNLNDH YPNPNNRMDL PIDLHQHHQA TSLPPADYMT NPQYGGSSND LMSFNDFVW
101: RINRKKAMIR SRNNSSPNSS SNELVGSRRQ VVLTMKNNAE IAARKDLYRY PSFDNKKLRV LLVKHLKNSD VGSLGRIVLP KREAEGNLPE LSTKEGMIVD
201: MRDADSMQNW SFKYKFWSNN KSRMYVLENT GQFVTEKRVE IGDFLTIYED ESKNLYFSIR KHADKPNEGR EDESMEANDM NFYEDIAFDF IPKDEDEDSI
301: AMLIGNLNDH YPNPNNRMDL PIDLHQHHQA TSLPPADYMT NPQYGGSSND LMSFNDFVW
001: MDNFLPFPSS NANSVQELSM DPNNNRSHFT TVPTYDHHQA QPHHFLPPFS YPVEQMAAVM NPQPVYLSEC YPQIPVTQTG SEFGSLVGNP CLWQERGGFL
101: DPRMTKMARI NRKNAMMRSR NNSSPNSSPS ELVDSKRQLM MLNLKNNVQI SDKKDSYQQS TFDNKKLRVL CEKELKNSDV GSLGRIVLPK RDAEANLPKL
201: SDKEGIVVQM RDVFSMQSWS FKYKFWSNNK SRMYVLENTG EFVKQNGAEI GDFLTIYEDE SKNLYFAMNG NSGKQNEGRE NESRERNHYE EAMLDYIPRD
301: EEEASIAMLI GNLNDHYPIP NDLMDLTTDL QHHQATSSSM PPEDHAYVGS SDDQVSFNDF EWW
101: DPRMTKMARI NRKNAMMRSR NNSSPNSSPS ELVDSKRQLM MLNLKNNVQI SDKKDSYQQS TFDNKKLRVL CEKELKNSDV GSLGRIVLPK RDAEANLPKL
201: SDKEGIVVQM RDVFSMQSWS FKYKFWSNNK SRMYVLENTG EFVKQNGAEI GDFLTIYEDE SKNLYFAMNG NSGKQNEGRE NESRERNHYE EAMLDYIPRD
301: EEEASIAMLI GNLNDHYPIP NDLMDLTTDL QHHQATSSSM PPEDHAYVGS SDDQVSFNDF EWW
Arabidopsis Description
LEC2B3 domain-containing transcription factor LEC2 [Source:UniProtKB/Swiss-Prot;Acc:Q1PFR7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.