CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY13468	Canola	nucleus	98.7	98.57
Bra023968.1-P	Field mustard	nucleus	98.44	98.31
AT4G32010.1	Thale cress	nucleus	86.87	85.64
KRH37982	Soybean	cytosol, nucleus, plastid	4.68	81.82
CDX68809	Canola	cytosol	10.79	63.36
KRH65426	Soybean	nucleus	58.65	49.83
KRH76125	Soybean	nucleus	58.0	49.12
VIT_08s0058g01300.t01	Wine grape	nucleus	56.83	47.29
Solyc10g075030.1.1	Tomato	nucleus	53.84	47.1
GSMUA_Achr5P27930_001	Banana	nucleus	34.98	46.38
CDX84832	Canola	nucleus	47.07	46.11
CDY10738	Canola	nucleus	46.94	45.87
CDY02066	Canola	nucleus	46.55	45.66
CDX97828	Canola	nucleus	45.12	45.48
CDY23997	Canola	nucleus	46.68	45.27
GSMUA_Achr8P01750_001	Banana	nucleus	50.2	45.04
CDY29672	Canola	nucleus	45.12	44.04
TraesCS2D01G105300.1	Wheat	nucleus	49.67	41.93
TraesCS2A01G105600.1	Wheat	nucleus	50.46	40.89
TraesCS2B01G122500.1	Wheat	nucleus	50.2	40.63
EER99914	Sorghum	nucleus	50.46	40.54
Os07t0679700-01	Rice	nucleus	49.94	40.46
Zm00001d022440_P005	Maize	plastid	49.94	39.88
HORVU2Hr1G017760.4	Barley	plastid	50.06	37.16
Zm00001d007173_P003	Maize	mitochondrion, nucleus	47.07	35.77
CDX82834	Canola	nucleus	29.39	31.26
CDX79071	Canola	nucleus	29.26	31.16
CDY28525	Canola	nucleus	8.58	21.36
CDY34212	Canola	nucleus	8.45	21.1
PGSC0003DMT400057590	Potato	nucleus	12.61	21.0
CDY53003	Canola	nucleus	8.32	20.38
CDY13657	Canola	nucleus	8.32	20.32
Zm00001d045970_P001	Maize	mitochondrion	6.63	19.77
Zm00001d037893_P001	Maize	mitochondrion	7.02	19.29
Zm00001d038148_P001	Maize	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	6.5	17.06
CDY15679	Canola	nucleus	6.5	14.33
CDX94608	Canola	nucleus	6.5	14.33
CDY66878	Canola	nucleus	6.63	14.17
CDY46611	Canola	nucleus	6.37	13.65
CDY15121	Canola	nucleus	9.36	10.71
CDX93029	Canola	nucleus	9.75	10.45
Zm00001d029836_P001	Maize	plastid	0.78	6.82

Protein Annotations

MapMan:15.5.5.4	Gene3D:2.40.330.10	Gene3D:3.30.40.100	GO:A0A078C668	InterPro:B3_DNA-bd	EnsemblPlants:CDX72340
ProteinID:CDX72340	ProteinID:CDX72340.1	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0008270	EnsemblPlantsGene:GSBRNA2T00099832001	InterPro:IPR003340	InterPro:IPR011124	InterPro:IPR015300
PFAM:PF02362	PFAM:PF07496	PFscan:PS50863	PFscan:PS51050	PANTHER:PTHR23336	PANTHER:PTHR23336:SF28
SMART:SM01019	SUPFAM:SSF101936	UniParc:UPI0004EDDF8A	InterPro:Znf_CW	SEG:seg	:

Description

BnaC07g43620D

Coordinates

chrLK031796:+:768150..772543

Molecular Weight (calculated)

85097.8 Da

IEP (calculated)

7.478

GRAVY (calculated)

-0.574

Length

769 amino acids

Sequence
(BLAST)

001: MESTKVCMNA QCGSTSTSGE WKRGWPMRSG ELASLCDKCG SAYEQSIFCQ VFHAEESGWR ECNSCDKRLH CGCIASRFMM ELVDNGGVTC ITCAKKSGLF
101: SMNVESNGRE FPTFASAEHV SSVLERTNLK HLLHFQRISP TQPFLQMKQE ESLLPARLES LRHNTEKKES AQPNLSISLG PTLMTSQFHD VDDRSKTTPI
201: FQLASRSRQL LPKPANSAPT TAPPMEPNGS LVSQIHVARP PPEGRGKTQL LPRYWPRITD QELQQLSGQY PHLSNSKIIP LFEKVLSASD AGRIGRLVLP
301: KACAEAYFPP ISQPEGLPLK IQDIKGKEWV FQFRFWPNNN SRMYVLEGVT PCIQSMQLQA GDTVTFSRTE PEGKLVMGYR KATNSTAAQM FKGSSEPNLN
401: MFSNNLSSGC GDINWSKLDK SDDMSKDGLM LQPSLISARK RVRNIGTKSK RLLIDSVDVL ELRLTWEEAQ ELLRPPQSAK PSICTVEDHD FEEYDEPPVF
501: GKRTVFVSRQ TGEQEQWVQC DACAKWRRLP VDTLLPPKWL CSDNVLDPGR SSCSAPDELT PREQDTLLRL SKEFKRRRLA SSNQEEASAL DTLANAAITT
601: TGEQGETEVA ATTKHPRHRA GCSCIVCSQP PSGKGKHKPS CTCTVCEAVK RRFKTLMMRK RNRGEAGQAS QQAQSDQCRE ETEAESIPAV ELPAAGGNID
701: LNSDPASRVS MMSLLQAATF PLEVYLKQKG VPNTAGEQQS SDIVSTENGS SSAAQEHDRD TSGAPEALN

Best Arabidopsis Sequence Match ( AT4G32010.1 )
(BLAST)

001: MESIKVCMNA LCGAASTSGE WKKGWPMRSG DLASLCDKCG CAYEQSIFCE VFHAKESGWR ECNSCDKRLH CGCIASRFMM ELLENGGVTC ISCAKKSGLI
101: SMNVSHESNG KDFPSFASAE HVGSVLERTN LKHLLHFQRI DPTHSSLQMK QEESLLPSSL DALRHKTERK ELSAQPNLSI SLGPTLMTSP FHDAAVDDRS
201: KTNSIFQLAP RSRQLLPKPA NSAPIAAGME PSGSLVSQIH VARPPPEGRG KTQLLPRYWP RITDQELLQL SGQYPHLSNS KIIPLFEKVL SASDAGRIGR
301: LVLPKACAEA YFPPISLPEG LPLKIQDIKG KEWVFQFRFW PNNNSRMYVL EGVTPCIQSM QLQAGDTVTF SRTEPEGKLV MGYRKATNST ATQMFKGSSE
401: PNLNMFSNSL NPGCGDINWS KLEKSEDMAK DNLFLQSSLT SARKRVRNIG TKSKRLLIDS VDVLELKITW EEAQELLRPP QSTKPSIFTL ENQDFEEYDE
501: PPVFGKRTLF VSRQTGEQEQ WVQCDACGKW RQLPVDILLP PKWSCSDNLL DPGRSSCSAP DELSPREQDT LVRQSKEFKR RRLASSNEKL NQSQDASALN
601: SLGNAGITTT GEQGEITVAA TTKHPRHRAG CSCIVCSQPP SGKGKHKPSC TCTVCEAVKR RFRTLMLRKR NKGEAGQASQ QAQSQSECRD ETEVESIPAV
701: ELAAGENIDL NSDPGASRVS MMRLLQAAAF PLEAYLKQKA ISNTAGEQQS SDMVSTEHGS SSAAQETEKD TTNGAHDPVN

Arabidopsis Description

VAL2B3 domain-containing transcription repressor VAL2 [Source:UniProtKB/Swiss-Prot;Acc:Q5CCK4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.