Factsheet for AT4G32010.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY13468	Canola	nucleus	86.15	87.27
Bra023968.1-P	Field mustard	nucleus	85.9	87.01
CDX72340	Canola	nucleus	85.64	86.87
KRH37982	Soybean	cytosol, nucleus, plastid	4.62	81.82
KRH65426	Soybean	nucleus	56.03	48.29
KRH76125	Soybean	nucleus	55.38	47.58
VIT_08s0058g01300.t01	Wine grape	nucleus	55.26	46.65
GSMUA_Achr5P27930_001	Banana	nucleus	34.62	46.55
Solyc10g075030.1.1	Tomato	nucleus	52.18	46.3
GSMUA_Achr8P01750_001	Banana	nucleus	48.46	44.11
AT2G30470.1	Thale cress	nucleus	43.85	43.29
TraesCS2D01G105300.1	Wheat	nucleus	48.08	41.16
TraesCS2A01G105600.1	Wheat	nucleus	48.85	40.15
TraesCS2B01G122500.1	Wheat	nucleus	48.59	39.89
EER99914	Sorghum	nucleus	48.72	39.71
Os07t0679700-01	Rice	nucleus	48.08	39.52
Zm00001d022440_P005	Maize	plastid	48.46	39.25
HORVU2Hr1G017760.4	Barley	plastid	48.21	36.29
Zm00001d007173_P003	Maize	mitochondrion, nucleus	45.9	35.38
AT4G21550.1	Thale cress	nucleus, plastid	28.72	31.33
Zm00001d045970_P001	Maize	mitochondrion	6.79	20.54
Zm00001d037893_P001	Maize	mitochondrion	7.31	20.36
PGSC0003DMT400057590	Potato	nucleus	11.92	20.13
Zm00001d038148_P001	Maize	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	6.79	18.09
AT3G26790.1	Thale cress	nucleus	7.18	17.89
AT1G28300.1	Thale cress	nucleus	7.05	15.15
AT3G24650.1	Thale cress	nucleus	9.62	10.42
Zm00001d029836_P001	Maize	plastid	0.77	6.82

Protein Annotations

MapMan:15.5.5.4	Gene3D:2.40.330.10	Gene3D:3.30.40.100	EntrezGene:829332	EMBL:AB206554	ProteinID:AEE85993.1
EMBL:AK228013	ProteinID:ANM67961.1	ArrayExpress:AT4G32010	EnsemblPlantsGene:AT4G32010	RefSeq:AT4G32010	TAIR:AT4G32010
RefSeq:AT4G32010-TAIR-G	EnsemblPlants:AT4G32010.1	TAIR:AT4G32010.1	Unigene:At.1885	InterPro:B3_DNA-bd	ProteinID:CAA16588.1
ProteinID:CAB79919.1	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	GO:GO:0046872	Symbol:HSL1	InterPro:IPR003340
InterPro:IPR011124	InterPro:IPR015300	RefSeq:NP_001329752.1	RefSeq:NP_194929.2	PFAM:PF02362	PFAM:PF07496
PO:PO:0000013	PO:PO:0000037	PO:PO:0000230	PO:PO:0000293	PO:PO:0001054	PO:PO:0001078
PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098
PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019
PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029
PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052
PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025281
PFscan:PS50863	PFscan:PS51050	PANTHER:PTHR23336	PANTHER:PTHR23336:SF28	UniProt:Q5CCK4	SMART:SM01019
SUPFAM:SSF101936	UniParc:UPI000034F14D	InterPro:Znf_CW	SEG:seg	:	:

Description

VAL2B3 domain-containing transcription repressor VAL2 [Source:UniProtKB/Swiss-Prot;Acc:Q5CCK4]

Coordinates

chr4:+:15479379..15485354

Molecular Weight (calculated)

86017.1 Da

IEP (calculated)

7.822

GRAVY (calculated)

-0.536

Length

780 amino acids

Sequence
(BLAST)

001: MESIKVCMNA LCGAASTSGE WKKGWPMRSG DLASLCDKCG CAYEQSIFCE VFHAKESGWR ECNSCDKRLH CGCIASRFMM ELLENGGVTC ISCAKKSGLI
101: SMNVSHESNG KDFPSFASAE HVGSVLERTN LKHLLHFQRI DPTHSSLQMK QEESLLPSSL DALRHKTERK ELSAQPNLSI SLGPTLMTSP FHDAAVDDRS
201: KTNSIFQLAP RSRQLLPKPA NSAPIAAGME PSGSLVSQIH VARPPPEGRG KTQLLPRYWP RITDQELLQL SGQYPHLSNS KIIPLFEKVL SASDAGRIGR
301: LVLPKACAEA YFPPISLPEG LPLKIQDIKG KEWVFQFRFW PNNNSRMYVL EGVTPCIQSM QLQAGDTVTF SRTEPEGKLV MGYRKATNST ATQMFKGSSE
401: PNLNMFSNSL NPGCGDINWS KLEKSEDMAK DNLFLQSSLT SARKRVRNIG TKSKRLLIDS VDVLELKITW EEAQELLRPP QSTKPSIFTL ENQDFEEYDE
501: PPVFGKRTLF VSRQTGEQEQ WVQCDACGKW RQLPVDILLP PKWSCSDNLL DPGRSSCSAP DELSPREQDT LVRQSKEFKR RRLASSNEKL NQSQDASALN
601: SLGNAGITTT GEQGEITVAA TTKHPRHRAG CSCIVCSQPP SGKGKHKPSC TCTVCEAVKR RFRTLMLRKR NKGEAGQASQ QAQSQSECRD ETEVESIPAV
701: ELAAGENIDL NSDPGASRVS MMRLLQAAAF PLEAYLKQKA ISNTAGEQQS SDMVSTEHGS SSAAQETEKD TTNGAHDPVN

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.