Factsheet for VIT_08s0058g01300.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH37982	Soybean	cytosol, nucleus, plastid	4.0	84.09
KRH65426	Soybean	nucleus	67.21	68.62
KRH76125	Soybean	nucleus	66.77	67.95
Solyc10g075030.1.1	Tomato	nucleus	59.96	63.03
CDY13468	Canola	nucleus	47.4	56.88
CDX72340	Canola	nucleus	47.29	56.83
Bra023968.1-P	Field mustard	nucleus	47.29	56.75
VIT_06s0004g08100.t01	Wine grape	nucleus	53.35	56.73
AT4G32010.1	Thale cress	nucleus	46.65	55.26
GSMUA_Achr5P27930_001	Banana	nucleus	34.09	54.31
GSMUA_Achr8P01750_001	Banana	nucleus	49.35	53.21
TraesCS2D01G105300.1	Wheat	nucleus	50.0	50.71
TraesCS2A01G105600.1	Wheat	nucleus	51.73	50.37
TraesCS2B01G122500.1	Wheat	nucleus	51.52	50.11
Os07t0679700-01	Rice	nucleus	51.41	50.05
EER99914	Sorghum	nucleus	51.62	49.84
Zm00001d022440_P005	Maize	plastid	51.19	49.12
HORVU2Hr1G017760.4	Barley	plastid	51.19	45.66
Zm00001d007173_P003	Maize	mitochondrion, nucleus	48.48	44.27
VIT_19s0014g03560.t01	Wine grape	nucleus	11.8	43.78
VIT_00s0181g00260.t01	Wine grape	nucleus	26.08	41.91
Zm00001d037893_P001	Maize	mitochondrion	7.58	25.0
PGSC0003DMT400057590	Potato	nucleus	12.01	24.03
Zm00001d045970_P001	Maize	mitochondrion	6.49	23.26
Zm00001d038148_P001	Maize	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	7.25	22.87
VIT_14s0068g01290.t01	Wine grape	nucleus	5.95	19.16
VIT_10s0071g00270.t01	Wine grape	nucleus	6.17	18.69
VIT_07s0005g05400.t01	Wine grape	nucleus	8.33	10.5
Zm00001d029836_P001	Maize	plastid	0.97	10.23

Protein Annotations

EntrezGene:100251742	wikigene:100251742	MapMan:15.5.5.4	Gene3D:2.40.330.10	Gene3D:3.30.40.100	InterPro:B3_DNA-bd
ProteinID:CCB44769	ProteinID:CCB44769.1	InterPro:DNA-bd_pseudobarrel_sf	UniProt:F6GXW8	EMBL:FN594967	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	InterPro:IPR003340	InterPro:IPR011124	InterPro:IPR015300
EntrezGene:LOC100251742	wikigene:LOC100251742	PFAM:PF02362	PFAM:PF07496	PFscan:PS50863	PFscan:PS51050
PANTHER:PTHR23336	PANTHER:PTHR23336:SF28	SMART:SM01019	SUPFAM:SSF101936	UniParc:UPI0001983C00	ArrayExpress:VIT_08s0058g01300
EnsemblPlantsGene:VIT_08s0058g01300	EnsemblPlants:VIT_08s0058g01300.t01	unigene:Vvi.821	RefSeq:XP_002267484	RefSeq:XP_002267484.1	RefSeq:XP_010653336.1
InterPro:Znf_CW	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr8:-:10751380..10767589

Molecular Weight (calculated)

100890.0 Da

IEP (calculated)

6.916

GRAVY (calculated)

-0.570

Length

924 amino acids

Sequence
(BLAST)

001: MASKTCANVS CPGASSGSTI EWRKGWALRS GDFAILCDKC GSAFEQLVFC DMFHSKDSGW RKCTACGKRL HCGCIASRSL LELLDSGGVN CINCIRSSGP
101: HPMTGDEKAN ESGAMTVDNV GEIRCTSVDN QLDGGSVEKM KLTQLGNDTS GDGLKNFLQS GNDNINGSLG QMKQEEVLPP QGETGSTCLS NLNQASIGSS
201: IHAKLDICKA NMMVKDIHES LVQTNLSITL GAPSGNPNVF PSAVVEEREQ HKTSTPIQQG PRSRHLLPKP PRSALSPVLE TNTGIVPQIR VARPPAEGRG
301: RNQLLPRYWP RITDQELQQI SGDSNSTIVP LFEKMLSASD AGRIGRLVLP KACAEAYFPP ISQPEGLPLR IQDVKGKEWV FQFRFWPNNN SRMYVLEGVT
401: PCIQSMQLQA GDTVTFSRMD PEGKLVMGFR KASNSVSMQD TQLSAIPNGA HSSETFFSGV IENQPIISGY SGILQSLKGS TDPHLNALSK HLNSASGDIG
501: WHKTEKHGGK TREGLLLPSM LVPEKKRTRT IGSKSKRLLI DGQDALELRL TWEEAQSLLR PPPSVKPVID VIEDYEFEAY TEPPVFGKRS IFTTLPSGGE
601: EQWVQCDSCS KWRKVPHDYL VPCQWTCAEN LWDQSRCSCS APDELSPREL EHILRQYKDF RKRRIAAVHR PAQEHEPSGL DALANAAALG DDMSDPAATS
701: VATTTKHPRH RPGCSCIVCI QPPSGKGKHK PTCTCNVCMT VKRRFKTLMM RKKKRQSERE AEIAQINHNI WGAKDEAEVD STSRLATPNP DPSESEAGLA
801: NESESRSQSN NLSTKLSETG KGKIDLNCHP DREEDLQVGS NRVSMMSLLQ VASLPLETYL KQNGLKSLAE QQGSSGSHVP PPQATGESEG PLNEDHCITA
901: PAVSERENGG DEEHSGQDQS KNDA

Best Arabidopsis Sequence Match ( AT4G32010.2 )
(BLAST)

001: MESIKVCMNA LCGAASTSGE WKKGWPMRSG DLASLCDKCG CAYEQSIFCE VFHAKESGWR ECNSCDKRLH CGCIASRFMM ELLENGGVTC ISCAKKSGLI
101: SMNVSHESNG KDFPSFASAE HVGSVLERTN LKHLLHFQRI DPTHSSLQMK QEESLLPSSL DALRHKTERK ELSAQPNLSI SLGPTLMTSP FHDAAVDDRS
201: KTNSIFQLAP RSRQLLPKPA NSAPIAAGME PSGSLVSQIH VARPPPEGRG KTQLLPRYWP RITDQELLQL SGHSNSKIIP LFEKVLSASD AGRIGRLVLP
301: KACAEAYFPP ISLPEGLPLK IQDIKGKEWV FQFRFWPNNN SRMYVLEGVT PCIQSMQLQA GDTVTFSRTE PEGKLVMGYR KATNSTATQM FKGSSEPNLN
401: MFSNSLNPGC GDINWSKLEK SEDMAKDNLF LQSSLTSARK RVRNIGTKSK RLLIDSVDVL ELKITWEEAQ ELLRPPQSTK PSIFTLENQD FEEYDEPPVF
501: GKRTLFVSRQ TGEQEQWVQC DACGKWRQLP VDILLPPKWS CSDNLLDPGR SSCSAPDELS PREQDTLVRQ SKEFKRRRLA SSNEKLNQSQ DASALNSLGN
601: AGITTTGEQG EITVAATTKH PRHRAGCSCI VCSQPPSGKG KHKPSCTCTV CEAVKRRFRT LMLRKRNKGE AGQASQQAQS QSECRDETEV ESIPAVELAA
701: GENIDLNSDP GASRVSMMRL LQAAAFPLEA YLKQKAISNT AGEQQSSDMV STEHGSSSAA QETEKDTTNG AHDPVN

Arabidopsis Description

VAL2B3 domain-containing transcription repressor VAL2 [Source:UniProtKB/Swiss-Prot;Acc:Q5CCK4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.