Factsheet for VIT_10s0071g00270.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P00120_001	Banana	nucleus	20.66	34.81
TraesCS7D01G326300.2	Wheat	nucleus	26.89	23.98
TraesCS7B01G230100.2	Wheat	nucleus	26.89	23.91
TraesCS7A01G329600.1	Wheat	nucleus	26.89	23.77
HORVU7Hr1G078770.5	Barley	nucleus	26.56	23.21
Os08t0101000-01	Rice	nucleus	26.56	22.38
VIT_14s0068g01290.t01	Wine grape	nucleus	20.98	22.3
EES14344	Sorghum	nucleus	26.56	21.83
Os04t0676650-00	Rice	nucleus	31.15	21.69
Zm00001d052750_P001	Maize	nucleus	26.23	21.68
Zm00001d034965_P002	Maize	nucleus	25.57	20.97
Os04t0676600-01	Rice	nucleus	27.87	19.63
TraesCS2B01G589800.2	Wheat	nucleus	28.85	19.43
TraesCS2D01G560000.1	Wheat	nucleus	28.52	19.04
HORVU2Hr1G119600.1	Barley	nucleus	26.89	18.94
TraesCS2A01G554300.1	Wheat	nucleus	28.85	18.72
Zm00001d001838_P001	Maize	nucleus	26.89	18.68
KXG27429	Sorghum	nucleus	27.21	18.4
VIT_19s0014g03560.t01	Wine grape	nucleus	12.46	15.26
VIT_07s0005g05400.t01	Wine grape	nucleus	25.57	10.64
VIT_00s0181g00260.t01	Wine grape	nucleus	17.38	9.22
VIT_06s0004g08100.t01	Wine grape	nucleus	18.36	6.44
VIT_08s0058g01300.t01	Wine grape	nucleus	18.69	6.17

Protein Annotations

MapMan:15.5.5.5	Gene3D:2.40.330.10	InterPro:B3_DNA-bd	ProteinID:CBI35396	ProteinID:CBI35396.3	UniProt:D7TY21
InterPro:DNA-bd_pseudobarrel_sf	EMBL:FN596260	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR003340
InterPro:IPR015300	PFAM:PF02362	PFscan:PS50863	PANTHER:PTHR31140	PANTHER:PTHR31140:SF1	SMART:SM01019
SUPFAM:SSF101936	UniParc:UPI0001BE45B2	ArrayExpress:VIT_10s0071g00270	EnsemblPlantsGene:VIT_10s0071g00270	EnsemblPlants:VIT_10s0071g00270.t01	:

Description

No Description!

Coordinates

chr10:-:16556709..16566825

Molecular Weight (calculated)

34273.9 Da

IEP (calculated)

7.867

GRAVY (calculated)

-0.526

Length

305 amino acids

Sequence
(BLAST)

001: MDAFFGHIPG GFGRDSVFHA GFMPIQAVFQ NPFMPTAVRA PPLSYNLSAP LSIEVAKRPE MNVFSASQCP KIGNPSDISS SDSIHTQKML RLSMDVSSDR
101: HEIVNLGASD KHELPLLWKN NAPSVTLSDI INSSETRPGS SPPANIHEDD EEIKGKGWLM LVQKELRNTD VGNLGRIVLP KKDAEANLPP LVAKDGLVLQ
201: MEDMKYSVNW KFKYRYWPNN RSRMYVMENT GNFVKMHDLQ PGDLFVVYKD ESSGKYIVRG KKAVKPAHAE DKDGSIHRHR VGEADRDWYR QIWPEQGTSI
301: QLGTL

Best Arabidopsis Sequence Match ( AT3G24650.1 )
(BLAST)

001: MKSLHVAANA GDLAEDCGIL GGDADDTVLM DGIDEVGREI WLDDHGGDNN HVHGHQDDDL IVHHDPSIFY GDLPTLPDFP CMSSSSSSST SPAPVNAIVS
101: SASSSSAASS STSSAASWAI LRSDGEDPTP NQNQYASGNC DDSSGALQST ASMEIPLDSS QGFGCGEGGG DCIDMMETFG YMDLLDSNEF FDTSAIFSQD
201: DDTQNPNLMD QTLERQEDQV VVPMMENNSG GDMQMMNSSL EQDDDLAAVF LEWLKNNKET VSAEDLRKVK IKKATIESAA RRLGGGKEAM KQLLKLILEW
301: VQTNHLQRRR TTTTTTNLSY QQSFQQDPFQ NPNPNNNNLI PPSDQTCFSP STWVPPPPQQ QAFVSDPGFG YMPAPNYPPQ PEFLPLLESP PSWPPPPQSG
401: PMPHQQFPMP PTSQYNQFGD PTGFNGYNMN PYQYPYVPAG QMRDQRLLRL CSSATKEARK KRMARQRRFL SHHHRHNNNN NNNNNNQQNQ TQIGETCAAV
501: APQLNPVATT ATGGTWMYWP NVPAVPPQLP PVMETQLPTM DRAGSASAMP RQQVVPDRRQ GWKPEKNLRF LLQKVLKQSD VGNLGRIVLP KKEAETHLPE
601: LEARDGISLA MEDIGTSRVW NMRYRFWPNN KSRMYLLENT GDFVKTNGLQ EGDFIVIYSD VKCGKYLIRG VKVRQPSGQK PEAPPSSAAT KRQNKSQRNI
701: NNNSPSANVV VASPTSQTVK

Arabidopsis Description

ABI3B3 domain-containing transcription factor ABI3 [Source:UniProtKB/Swiss-Prot;Acc:Q01593]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.