Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G589800.2 | Wheat | nucleus | 61.2 | 58.5 |
| TraesCS2D01G560000.1 | Wheat | nucleus | 60.97 | 57.77 |
| TraesCS2A01G554300.1 | Wheat | nucleus | 58.66 | 54.04 |
| GSMUA_Achr3P00120_001 | Banana | nucleus | 15.47 | 37.02 |
| Os04t0676650-00 | Rice | nucleus | 34.18 | 33.79 |
| Os04t0676600-01 | Rice | nucleus | 32.1 | 32.1 |
| HORVU7Hr1G078770.5 | Barley | nucleus | 25.64 | 31.81 |
| Zm00001d001838_P001 | Maize | nucleus | 29.33 | 28.93 |
| KXG27429 | Sorghum | nucleus | 28.87 | 27.72 |
| VIT_10s0071g00270.t01 | Wine grape | nucleus | 18.94 | 26.89 |
| HORVU3Hr1G067350.2 | Barley | nucleus | 15.24 | 17.79 |
| HORVU2Hr1G040400.1 | Barley | nucleus | 11.55 | 11.85 |
| HORVU3Hr1G092690.2 | Barley | nucleus | 15.47 | 9.82 |
| HORVU2Hr1G017760.4 | Barley | plastid | 15.01 | 6.27 |
| HORVU2Hr1G040410.4 | Barley | nucleus, plastid | 13.86 | 6.14 |
| HORVU2Hr1G040390.1 | Barley | nucleus | 0.92 | 1.98 |
Protein Annotations
| MapMan:15.5.5.5 | Gene3D:2.40.330.10 | UniProt:A0A287JN65 | InterPro:B3_DNA-bd | ncoils:Coil | InterPro:DNA-bd_pseudobarrel_sf |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:HORVU2Hr1G119600 | EnsemblPlants:HORVU2Hr1G119600.1 | InterPro:IPR003340 |
| InterPro:IPR015300 | PFAM:PF02362 | PANTHER:PTHR31140 | PANTHER:PTHR31140:SF12 | SMART:SM01019 | SUPFAM:SSF101936 |
| UniParc:UPI000B47394C | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chrchr2H:-:745408063..745410845
Molecular Weight (calculated)
37843.5 Da
IEP (calculated)
9.457
GRAVY (calculated)
-0.663
Length
433 amino acids
Sequence
(BLAST)
(BLAST)
001: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
101: QPQVPMGAGG FGDWTMYNVN SSTFVSVACG SSSSVVRGNN GYHQSSRLCS ATAWPNFSPR SPYATVYPHG MQQDHQAITY HGNNNNQQGS GFVSNFRVDQ
201: PISPASNNHS PPQLLDEATY TKRAKRNTMR TQKGRNSEDP PEMESENSDV LDHPMLDENH NLNQGQEIFT TRFNCKDYYM IVWKELTNSD VGNIGRIVLP
301: KRDAEANLPA LLERDGLILK MDDLKLPVTW NFKFRFWPNN KSRMYVLEST GEFSKNHNLE PQDTFIIYKS LESGKFLVRA EKVTGQCATL LCPECKEEGR
401: INKQCGFTRN LNAKKKRTPR SNHKKRRGNT MKH
101: QPQVPMGAGG FGDWTMYNVN SSTFVSVACG SSSSVVRGNN GYHQSSRLCS ATAWPNFSPR SPYATVYPHG MQQDHQAITY HGNNNNQQGS GFVSNFRVDQ
201: PISPASNNHS PPQLLDEATY TKRAKRNTMR TQKGRNSEDP PEMESENSDV LDHPMLDENH NLNQGQEIFT TRFNCKDYYM IVWKELTNSD VGNIGRIVLP
301: KRDAEANLPA LLERDGLILK MDDLKLPVTW NFKFRFWPNN KSRMYVLEST GEFSKNHNLE PQDTFIIYKS LESGKFLVRA EKVTGQCATL LCPECKEEGR
401: INKQCGFTRN LNAKKKRTPR SNHKKRRGNT MKH
001: MKSLHVAANA GDLAEDCGIL GGDADDTVLM DGIDEVGREI WLDDHGGDNN HVHGHQDDDL IVHHDPSIFY GDLPTLPDFP CMSSSSSSST SPAPVNAIVS
101: SASSSSAASS STSSAASWAI LRSDGEDPTP NQNQYASGNC DDSSGALQST ASMEIPLDSS QGFGCGEGGG DCIDMMETFG YMDLLDSNEF FDTSAIFSQD
201: DDTQNPNLMD QTLERQEDQV VVPMMENNSG GDMQMMNSSL EQDDDLAAVF LEWLKNNKET VSAEDLRKVK IKKATIESAA RRLGGGKEAM KQLLKLILEW
301: VQTNHLQRRR TTTTTTNLSY QQSFQQDPFQ NPNPNNNNLI PPSDQTCFSP STWVPPPPQQ QAFVSDPGFG YMPAPNYPPQ PEFLPLLESP PSWPPPPQSG
401: PMPHQQFPMP PTSQYNQFGD PTGFNGYNMN PYQYPYVPAG QMRDQRLLRL CSSATKEARK KRMARQRRFL SHHHRHNNNN NNNNNNQQNQ TQIGETCAAV
501: APQLNPVATT ATGGTWMYWP NVPAVPPQLP PVMETQLPTM DRAGSASAMP RQQVVPDRRQ GWKPEKNLRF LLQKVLKQSD VGNLGRIVLP KKEAETHLPE
601: LEARDGISLA MEDIGTSRVW NMRYRFWPNN KSRMYLLENT GDFVKTNGLQ EGDFIVIYSD VKCGKYLIRG VKVRQPSGQK PEAPPSSAAT KRQNKSQRNI
701: NNNSPSANVV VASPTSQTVK
101: SASSSSAASS STSSAASWAI LRSDGEDPTP NQNQYASGNC DDSSGALQST ASMEIPLDSS QGFGCGEGGG DCIDMMETFG YMDLLDSNEF FDTSAIFSQD
201: DDTQNPNLMD QTLERQEDQV VVPMMENNSG GDMQMMNSSL EQDDDLAAVF LEWLKNNKET VSAEDLRKVK IKKATIESAA RRLGGGKEAM KQLLKLILEW
301: VQTNHLQRRR TTTTTTNLSY QQSFQQDPFQ NPNPNNNNLI PPSDQTCFSP STWVPPPPQQ QAFVSDPGFG YMPAPNYPPQ PEFLPLLESP PSWPPPPQSG
401: PMPHQQFPMP PTSQYNQFGD PTGFNGYNMN PYQYPYVPAG QMRDQRLLRL CSSATKEARK KRMARQRRFL SHHHRHNNNN NNNNNNQQNQ TQIGETCAAV
501: APQLNPVATT ATGGTWMYWP NVPAVPPQLP PVMETQLPTM DRAGSASAMP RQQVVPDRRQ GWKPEKNLRF LLQKVLKQSD VGNLGRIVLP KKEAETHLPE
601: LEARDGISLA MEDIGTSRVW NMRYRFWPNN KSRMYLLENT GDFVKTNGLQ EGDFIVIYSD VKCGKYLIRG VKVRQPSGQK PEAPPSSAAT KRQNKSQRNI
701: NNNSPSANVV VASPTSQTVK
Arabidopsis Description
ABI3B3 domain-containing transcription factor ABI3 [Source:UniProtKB/Swiss-Prot;Acc:Q01593]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.