Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
26228564
|
msms PMID:
26228564
doi
Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G589800.2 | Wheat | nucleus | 86.81 | 90.07 |
| TraesCS2D01G560000.1 | Wheat | nucleus | 86.6 | 89.06 |
| HORVU2Hr1G119600.1 | Barley | nucleus | 54.04 | 58.66 |
| Os04t0676650-00 | Rice | nucleus | 35.96 | 38.58 |
| GSMUA_Achr3P00120_001 | Banana | nucleus | 14.26 | 37.02 |
| Os04t0676600-01 | Rice | nucleus | 32.34 | 35.1 |
| TraesCS7A01G329600.1 | Wheat | nucleus | 25.74 | 35.07 |
| Zm00001d001838_P001 | Maize | nucleus | 31.7 | 33.94 |
| KXG27429 | Sorghum | nucleus | 31.7 | 33.04 |
| VIT_10s0071g00270.t01 | Wine grape | nucleus | 18.72 | 28.85 |
| TraesCS3A01G249100.2 | Wheat | nucleus | 18.09 | 21.91 |
| TraesCS3A01G417300.1 | Wheat | nucleus | 17.66 | 11.99 |
| TraesCS2A01G105600.1 | Wheat | nucleus | 13.19 | 6.53 |
| TraesCS2A01G204300.1 | Wheat | plastid | 12.98 | 6.33 |
Protein Annotations
| EnsemblPlants:TraesCS2A01G554300.1 | EnsemblPlantsGene:TraesCS2A01G554300 | Gene3D:2.40.330.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:B3_DNA-bd | InterPro:DNA-bd_pseudobarrel_sf | InterPro:IPR003340 | InterPro:IPR015300 | PANTHER:PTHR31140 |
| PANTHER:PTHR31140:SF12 | PFAM:PF02362 | SEG:seg | SMART:SM01019 | SUPFAM:SSF101936 | TIGR:cd10017 |
| MapMan:15.5.5.5 | : | : | : | : | : |
Description
No Description!
Coordinates
chr2A:+:759461765..759465307
Molecular Weight (calculated)
51765.0 Da
IEP (calculated)
8.909
GRAVY (calculated)
-0.607
Length
470 amino acids
Sequence
(BLAST)
(BLAST)
001: MADANGSSSL SPQHSSGGEF VTGDFVAVPG AGPHASFQAL LASVGGHGVH GDVANVLAQR QYQEFEQLFG PPGPLIQAPP QPMPLQVQAP SPTPPPPHCA
101: QSNLLMPTGT HNYQHWQPPA PQLGVAAAPR QAPMGAGGFG DWTMYNVNST ILSVACGSNS GNNNGYHQSS RLCSATAWPN NFMPPPPSSY SVYPHGIQQQ
201: QQQGHQQAIT YNANNNHQQG NSGFVSNFSV DPPLLPAQCF QPISPVPNNR SPPQLFEESR YARRAKRRTQ KRKNSEDPPE MGSENSGGLD HAMMLDGNHN
301: FSNLGRQIFI TRFNCKDYHM VVWKELTNSD VGNIGRIVLP KRDAEANLPA LLERDGLILK MEDMRLPVTW NFKFRYWPNN KSRMYVLEST GEFTKHHNLA
401: TQDTFIIYKS LESGKFIVRG EKVTGQCATL ICPECKEQGR INNRQCGFTR NLHARKRRSM PAVFTSAPSQ
101: QSNLLMPTGT HNYQHWQPPA PQLGVAAAPR QAPMGAGGFG DWTMYNVNST ILSVACGSNS GNNNGYHQSS RLCSATAWPN NFMPPPPSSY SVYPHGIQQQ
201: QQQGHQQAIT YNANNNHQQG NSGFVSNFSV DPPLLPAQCF QPISPVPNNR SPPQLFEESR YARRAKRRTQ KRKNSEDPPE MGSENSGGLD HAMMLDGNHN
301: FSNLGRQIFI TRFNCKDYHM VVWKELTNSD VGNIGRIVLP KRDAEANLPA LLERDGLILK MEDMRLPVTW NFKFRYWPNN KSRMYVLEST GEFTKHHNLA
401: TQDTFIIYKS LESGKFIVRG EKVTGQCATL ICPECKEQGR INNRQCGFTR NLHARKRRSM PAVFTSAPSQ
001: MKSLHVAANA GDLAEDCGIL GGDADDTVLM DGIDEVGREI WLDDHGGDNN HVHGHQDDDL IVHHDPSIFY GDLPTLPDFP CMSSSSSSST SPAPVNAIVS
101: SASSSSAASS STSSAASWAI LRSDGEDPTP NQNQYASGNC DDSSGALQST ASMEIPLDSS QGFGCGEGGG DCIDMMETFG YMDLLDSNEF FDTSAIFSQD
201: DDTQNPNLMD QTLERQEDQV VVPMMENNSG GDMQMMNSSL EQDDDLAAVF LEWLKNNKET VSAEDLRKVK IKKATIESAA RRLGGGKEAM KQLLKLILEW
301: VQTNHLQRRR TTTTTTNLSY QQSFQQDPFQ NPNPNNNNLI PPSDQTCFSP STWVPPPPQQ QAFVSDPGFG YMPAPNYPPQ PEFLPLLESP PSWPPPPQSG
401: PMPHQQFPMP PTSQYNQFGD PTGFNGYNMN PYQYPYVPAG QMRDQRLLRL CSSATKEARK KRMARQRRFL SHHHRHNNNN NNNNNNQQNQ TQIGETCAAV
501: APQLNPVATT ATGGTWMYWP NVPAVPPQLP PVMETQLPTM DRAGSASAMP RQQVVPDRRQ GWKPEKNLRF LLQKVLKQSD VGNLGRIVLP KKEAETHLPE
601: LEARDGISLA MEDIGTSRVW NMRYRFWPNN KSRMYLLENT GDFVKTNGLQ EGDFIVIYSD VKCGKYLIRG VKVRQPSGQK PEAPPSSAAT KRQNKSQRNI
701: NNNSPSANVV VASPTSQTVK
101: SASSSSAASS STSSAASWAI LRSDGEDPTP NQNQYASGNC DDSSGALQST ASMEIPLDSS QGFGCGEGGG DCIDMMETFG YMDLLDSNEF FDTSAIFSQD
201: DDTQNPNLMD QTLERQEDQV VVPMMENNSG GDMQMMNSSL EQDDDLAAVF LEWLKNNKET VSAEDLRKVK IKKATIESAA RRLGGGKEAM KQLLKLILEW
301: VQTNHLQRRR TTTTTTNLSY QQSFQQDPFQ NPNPNNNNLI PPSDQTCFSP STWVPPPPQQ QAFVSDPGFG YMPAPNYPPQ PEFLPLLESP PSWPPPPQSG
401: PMPHQQFPMP PTSQYNQFGD PTGFNGYNMN PYQYPYVPAG QMRDQRLLRL CSSATKEARK KRMARQRRFL SHHHRHNNNN NNNNNNQQNQ TQIGETCAAV
501: APQLNPVATT ATGGTWMYWP NVPAVPPQLP PVMETQLPTM DRAGSASAMP RQQVVPDRRQ GWKPEKNLRF LLQKVLKQSD VGNLGRIVLP KKEAETHLPE
601: LEARDGISLA MEDIGTSRVW NMRYRFWPNN KSRMYLLENT GDFVKTNGLQ EGDFIVIYSD VKCGKYLIRG VKVRQPSGQK PEAPPSSAAT KRQNKSQRNI
701: NNNSPSANVV VASPTSQTVK
Arabidopsis Description
ABI3B3 domain-containing transcription factor ABI3 [Source:UniProtKB/Swiss-Prot;Acc:Q01593]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.