Factsheet for Zm00001d001838_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG27429	Sorghum	nucleus	86.56	84.26
Os04t0676650-00	Rice	nucleus	39.18	39.27
Os04t0676600-01	Rice	nucleus	36.67	37.18
GSMUA_Achr3P00120_001	Banana	nucleus	14.58	35.36
TraesCS2B01G589800.2	Wheat	nucleus	34.4	33.33
Zm00001d052750_P001	Maize	nucleus	27.56	32.79
TraesCS2D01G560000.1	Wheat	nucleus	33.71	32.39
TraesCS2A01G554300.1	Wheat	nucleus	33.94	31.7
Zm00001d034965_P002	Maize	nucleus	25.06	29.57
HORVU2Hr1G119600.1	Barley	nucleus	28.93	29.33
VIT_10s0071g00270.t01	Wine grape	nucleus	18.68	26.89
Zm00001d011712_P001	Maize	mitochondrion	20.27	22.7
Zm00001d042396_P003	Maize	nucleus	18.91	12.01
Zm00001d006597_P003	Maize	plastid	13.9	6.32
Zm00001d021790_P010	Maize	nucleus	13.9	6.31
Zm00001d022440_P005	Maize	plastid	13.21	6.02
Zm00001d007173_P003	Maize	mitochondrion, nucleus	11.39	4.94
Zm00001d012162_P002	Maize	mitochondrion	1.37	3.39
Zm00001d045970_P001	Maize	mitochondrion	1.82	3.1
Zm00001d038148_P001	Maize	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	1.82	2.73
Zm00001d037893_P001	Maize	mitochondrion	1.59	2.5
Zm00001d029836_P001	Maize	plastid	0.46	2.27

Protein Annotations

MapMan:15.5.5.5	Gene3D:2.40.330.10	UniProt:A0A1D6DTG4	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR003340	InterPro:IPR015300	ProteinID:ONM12153.1	PFAM:PF02362
PFscan:PS50863	PANTHER:PTHR31140	PANTHER:PTHR31140:SF1	SMART:SM01019	SUPFAM:SSF101936	UniParc:UPI0002208F3C
EnsemblPlantsGene:Zm00001d001838	EnsemblPlants:Zm00001d001838_P001	EnsemblPlants:Zm00001d001838_T001	SEG:seg	:	:

Description

ABI3-VP1-transcription factor 3B3 domain-containing transcription factor LEC2

Coordinates

chr2:+:1675459..1681671

Molecular Weight (calculated)

48091.0 Da

IEP (calculated)

6.463

GRAVY (calculated)

-0.579

Length

439 amino acids

Sequence
(BLAST)

001: MANANGSSTG AGHSDLVRAI SHEQHQAFMA SVPRAAPGGV NVHHQQHFHQ YPAGLIPAPV ALPVHAPVSS QTSPYSAQIA VPPPPPPLIA SPDHRLHSLP
101: PTGCYQLDYS PYGNAAAPSQ QHTSAIRGFA DWGTHSNALM SLAHATSFGN NGSSNINNNG LLHQNLSPYT THTWTTTYVQ RPYNTAVYAP ATMNMLQTPP
201: FHSNSHEKES GAVFSNSFNM APSVTPTSPF QLMSPSSTNY TSTQIFEETN NLEDTSRVFG GGDNESNNSE EPDPKPAVEM EDLNQGNDHT SNKTANCQDY
301: RMVLRKDLTN SDVGNIGRIV LPKKDAEPNL PILEDKDGLI LEMDDFELPV VWNFKYRYWP NNKSRMYILE STGEFVKRHG LQAKDILIIY RNKKSGRYVA
401: RAVKAEDIAP PECECVEAGN PREECGFSVS PSINKKIIT

Best Arabidopsis Sequence Match ( AT3G24650.1 )
(BLAST)

001: MKSLHVAANA GDLAEDCGIL GGDADDTVLM DGIDEVGREI WLDDHGGDNN HVHGHQDDDL IVHHDPSIFY GDLPTLPDFP CMSSSSSSST SPAPVNAIVS
101: SASSSSAASS STSSAASWAI LRSDGEDPTP NQNQYASGNC DDSSGALQST ASMEIPLDSS QGFGCGEGGG DCIDMMETFG YMDLLDSNEF FDTSAIFSQD
201: DDTQNPNLMD QTLERQEDQV VVPMMENNSG GDMQMMNSSL EQDDDLAAVF LEWLKNNKET VSAEDLRKVK IKKATIESAA RRLGGGKEAM KQLLKLILEW
301: VQTNHLQRRR TTTTTTNLSY QQSFQQDPFQ NPNPNNNNLI PPSDQTCFSP STWVPPPPQQ QAFVSDPGFG YMPAPNYPPQ PEFLPLLESP PSWPPPPQSG
401: PMPHQQFPMP PTSQYNQFGD PTGFNGYNMN PYQYPYVPAG QMRDQRLLRL CSSATKEARK KRMARQRRFL SHHHRHNNNN NNNNNNQQNQ TQIGETCAAV
501: APQLNPVATT ATGGTWMYWP NVPAVPPQLP PVMETQLPTM DRAGSASAMP RQQVVPDRRQ GWKPEKNLRF LLQKVLKQSD VGNLGRIVLP KKEAETHLPE
601: LEARDGISLA MEDIGTSRVW NMRYRFWPNN KSRMYLLENT GDFVKTNGLQ EGDFIVIYSD VKCGKYLIRG VKVRQPSGQK PEAPPSSAAT KRQNKSQRNI
701: NNNSPSANVV VASPTSQTVK

Arabidopsis Description

ABI3B3 domain-containing transcription factor ABI3 [Source:UniProtKB/Swiss-Prot;Acc:Q01593]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.