CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d001838_P001	Maize	nucleus	84.26	86.56
Os04t0676650-00	Rice	nucleus	38.36	39.5
Os04t0676600-01	Rice	nucleus	35.48	36.95
GSMUA_Achr3P00120_001	Banana	nucleus	14.63	36.46
TraesCS2B01G589800.2	Wheat	nucleus	33.04	32.89
EES14344	Sorghum	nucleus	26.83	32.61
TraesCS2D01G560000.1	Wheat	nucleus	32.37	31.95
TraesCS2A01G554300.1	Wheat	nucleus	33.04	31.7
HORVU2Hr1G119600.1	Barley	nucleus	27.72	28.87
VIT_10s0071g00270.t01	Wine grape	nucleus	18.4	27.21
KXG33236	Sorghum	mitochondrion, nucleus	18.85	21.68
OQU89229	Sorghum	nucleus	13.97	15.67
EES04085	Sorghum	nucleus	17.52	11.27
KXG36480	Sorghum	nucleus	12.64	5.89
EER99914	Sorghum	nucleus	12.2	5.75

Protein Annotations

MapMan:15.5.5.5	Gene3D:2.40.330.10	EntrezGene:8076460	UniProt:A0A1B6PP25	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR003340	InterPro:IPR015300	EnsemblPlants:KXG27429
ProteinID:KXG27429	ProteinID:KXG27429.1	PFAM:PF02362	PANTHER:PTHR31140	PANTHER:PTHR31140:SF1	SMART:SM01019
EnsemblPlantsGene:SORBI_3006G266400	SUPFAM:SSF101936	unigene:Sbi.6064	UniParc:UPI00081AB814	SEG:seg	:

Description

hypothetical protein

Coordinates

chr6:-:59997943..60003083

Molecular Weight (calculated)

49392.8 Da

IEP (calculated)

7.341

GRAVY (calculated)

-0.546

Length

451 amino acids

Sequence
(BLAST)

001: MANAKGSSAG AAGAGHADLG RAISHEQHQA FMMASVHRAA PGAANVHQQH FHQYPAGLIR APVPMPVHVP VSQTPYSAQI AVPPPQPLIP PPDHRLHSLP
101: PTGCYQDYSP YGNTASLQHT AARGFADWGV HNNAIVSLAH ATSFANGSNN INSNGLLHQN LSPYTTHTWT TTYVQRPYNT AYAPATMNML QTPSFHSNNH
201: EKESVFPSTS PCKDSTPSVL NCAVFSNSFN MGPSGTPTSP FQLTSPSSTN YTSTQIFEET NNLEDTSRVF GGGDNESNNS EEPDPTPAVE MEDLNQGNGH
301: ISFTNKKVNC QDYRMVLRKD LTNSDVGNIG RIVLPKKDAE PNLPILEDKD GLILEMDDFE LPAVWKFKYR YWPNNKSRMY ILETTGEFVK RHGLQAKDIL
401: IIYRNKRSGR YVARAVKAEH IPAPGCECIK AGNPREECGF SVSPSVKKII T

Best Arabidopsis Sequence Match ( AT1G28300.1 )
(BLAST)

001: MDNFLPFPSS NANSVQELSM DPNNNRSHFT TVPTYDHHQA QPHHFLPPFS YPVEQMAAVM NPQPVYLSEC YPQIPVTQTG SEFGSLVGNP CLWQERGGFL
101: DPRMTKMARI NRKNAMMRSR NNSSPNSSPS ELVDSKRQLM MLNLKNNVQI SDKKDSYQQS TFDNKKLRVL CEKELKNSDV GSLGRIVLPK RDAEANLPKL
201: SDKEGIVVQM RDVFSMQSWS FKYKFWSNNK SRMYVLENTG EFVKQNGAEI GDFLTIYEDE SKNLYFAMNG NSGKQNEGRE NESRERNHYE EAMLDYIPRD
301: EEEASIAMLI GNLNDHYPIP NDLMDLTTDL QHHQATSSSM PPEDHAYVGS SDDQVSFNDF EWW

Arabidopsis Description

LEC2B3 domain-containing transcription factor LEC2 [Source:UniProtKB/Swiss-Prot;Acc:Q1PFR7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.