CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

plastid 3
nucleus 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d011712_P001	Maize	mitochondrion	90.56	90.56
TraesCS3D01G249100.1	Wheat	plastid	50.77	66.11
Os01t0713600-01	Rice	plastid	48.47	65.74
TraesCS3B01G278000.1	Wheat	plastid	50.51	65.56
TraesCS3A01G249100.2	Wheat	nucleus	61.48	62.11
GSMUA_Achr3P32440_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	29.34	56.65
HORVU3Hr1G067350.2	Barley	nucleus	51.28	54.18
GSMUA_Achr8P18070_001	Banana	nucleus	28.06	52.88
CDY34212	Canola	nucleus	21.94	27.92
Bra032953.1-P	Field mustard	nucleus	21.94	27.92
CDY28525	Canola	nucleus	21.94	27.83
Solyc02g094460.1.1	Tomato	nucleus	19.39	27.74
VIT_14s0068g01290.t01	Wine grape	nucleus	19.9	27.18
AT3G26790.1	Thale cress	nucleus	21.43	26.84
PGSC0003DMT400052167	Potato	nucleus	19.39	26.48
CDY13657	Canola	nucleus	20.92	26.03
KRG94672	Soybean	nucleus	21.94	25.9
CDY53003	Canola	nucleus	20.66	25.8
KRH06856	Soybean	nucleus	21.68	25.15
CDY66878	Canola	nucleus	19.64	21.39
Bra025229.1-P	Field mustard	nucleus	14.8	21.32
CDX94608	Canola	nucleus	18.88	21.2
CDY15679	Canola	nucleus	18.88	21.2
CDY46611	Canola	nucleus	19.39	21.17
Bra030087.1-P	Field mustard	nucleus	18.11	20.64
Bra032890.1-P	Field mustard	nucleus	18.62	20.62
AT1G28300.1	Thale cress	nucleus	18.88	20.39
KXG27429	Sorghum	nucleus	21.68	18.85
EES14344	Sorghum	nucleus	17.35	18.33
KRG89628	Soybean	plastid	16.58	17.24
OQU89229	Sorghum	nucleus	17.6	17.16
KRG89627	Soybean	nucleus	15.82	16.45
EES04085	Sorghum	nucleus	20.66	11.55
KXG36480	Sorghum	nucleus	16.33	6.61
EER99914	Sorghum	nucleus	15.31	6.27

Protein Annotations

MapMan:15.5.5.5	Gene3D:2.40.330.10	UniProt:A0A1B6Q5P8	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0000003
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009628	GO:GO:0009791
GO:GO:0009987	GO:GO:0044212	GO:GO:0048573	InterPro:IPR003340	InterPro:IPR015300	EnsemblPlants:KXG33236
ProteinID:KXG33236	ProteinID:KXG33236.1	ProteinID:OQU87412.1	PFAM:PF02362	PFscan:PS50863	PANTHER:PTHR31140
PANTHER:PTHR31140:SF20	SMART:SM01019	EnsemblPlantsGene:SORBI_3003G275400	SUPFAM:SSF101936	UniParc:UPI00081AB688	SEG:seg

Description

hypothetical protein

Coordinates

chr3:+:61160853..61165496

Molecular Weight (calculated)

42663.0 Da

IEP (calculated)

9.944

GRAVY (calculated)

-0.342

Length

392 amino acids

Sequence
(BLAST)

001: MPARASHPAL ATLRPPGWPR LRAPGLGLAP TGGRWRCLLP HLHPISEPAR HLSPRAPRLR VSARPPHPAI KASPAPTLDA VVVAAAAATA AAATSSLTGM
101: AGINKRRTSP ASTSSSSGGD VLPQRVTRKR RSVRRGARTA ARRPSSAPRP INELDLNTAA LDPDHYATGL RVLLQKELRN SDVSQLGRIV LPKKEAESYL
201: PILMAKDGKS LCMHDLLNAQ LWTFKYRYWF NNKSRMYVLE NTGDYVKAHD LQQGDFIVIY KDDENNRFVI GAKKAGDEQT ATVPQVHEHI HISAALPAPQ
301: AFHDYAGPVA AEADMLAIVP QADEIFDGIL NSLPEIPVAN VRYSDFFDPF GDSMDMANPL SSNNPSVNLA THFHDEKIGS CSFPYPKSGP LM

Best Arabidopsis Sequence Match ( AT3G26790.1 )
(BLAST)

001: MMVDENVETK ASTLVASVDH GFGSGSGHDH HGLSASVPLL GVNWKKRRMP RQRRSSSSFN LLSFPPPMPP ISHVPTPLPA RKIDPRKLRF LFQKELKNSD
101: VSSLRRMILP KKAAEAHLPA LECKEGIPIR MEDLDGFHVW TFKYRYWPNN NSRMYVLENT GDFVNAHGLQ LGDFIMVYQD LYSNNYVIQA RKASEEEEVD
201: VINLEEDDVY TNLTRIENTV VNDLLLQDFN HHNNNNNNNS NSNSNKCSYY YPVIDDVTTN TESFVYDTTA LTSNDTPLDF LGGHTTTTNN YYSKFGTFDG
301: LGSVENISLD DFY

Arabidopsis Description

FUS3B3 domain-containing transcription factor FUS3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LW31]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.