Factsheet for Bra030087.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15679	Canola	nucleus	99.71	98.28
Bra032890.1-P	Field mustard	nucleus	75.0	72.88
AT1G28300.1	Thale cress	nucleus	68.9	65.29
GSMUA_Achr8P18070_001	Banana	nucleus	18.9	31.25
GSMUA_Achr3P32440_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	17.15	29.06
TraesCS3D01G249100.1	Wheat	plastid	21.22	24.25
TraesCS3B01G278000.1	Wheat	plastid	21.22	24.17
Os01t0713600-01	Rice	plastid	19.48	23.18
Bra032953.1-P	Field mustard	nucleus	18.6	20.78
TraesCS3A01G249100.2	Wheat	nucleus	21.51	19.07
HORVU3Hr1G067350.2	Barley	nucleus	20.35	18.87
KRG89628	Soybean	plastid	20.64	18.83
KRG89627	Soybean	nucleus	20.06	18.3
Zm00001d011712_P001	Maize	mitochondrion	20.64	18.11
KXG33236	Sorghum	mitochondrion, nucleus	20.64	18.11
Bra025229.1-P	Field mustard	nucleus	12.5	15.81
Bra013248.1-P	Field mustard	nucleus	26.74	12.83
Bra013535.1-P	Field mustard	nucleus	13.37	6.58
Bra023968.1-P	Field mustard	nucleus	14.53	6.49
Bra021635.1-P	Field mustard	nucleus	14.53	6.46
Bra018313.1-P	Field mustard	nucleus	14.83	6.46
Bra022801.1-P	Field mustard	nucleus	14.53	6.39

Protein Annotations

MapMan:15.5.5.5	Gene3D:2.40.330.10	InterPro:B3_DNA-bd	EnsemblPlantsGene:Bra030087	EnsemblPlants:Bra030087.1	EnsemblPlants:Bra030087.1-P
InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR003340	InterPro:IPR015300
UniProt:M4EMR7	PFAM:PF02362	PANTHER:PTHR31140	PANTHER:PTHR31140:SF1	SMART:SM01019	SUPFAM:SSF101936
UniParc:UPI0002541122	SEG:seg	:	:	:	:

Description

AT1G28300 (E=1e-112) LEC2 | LEC2 (LEAFY COTYLEDON 2); DNA binding / transcription factor

Coordinates

chrA07:+:6670276..6673538

Molecular Weight (calculated)

39404.3 Da

IEP (calculated)

5.783

GRAVY (calculated)

-0.713

Length

344 amino acids

Sequence
(BLAST)

001: MDNFLPFSSS NANSVQELSM DLNKNRSHFS MAQPQHLLPP YSYVACPALD QTGTMNHQPL HSSDAFPQIP VVQTGGEFGY LVCKPGVRQE RGGFLDPHST
101: KMARINRKKA MLRSRNNSNP NSSSNELVDS RRQVALTMKN NAEIAARKDF YRFSSFDNKK LRVLLVKHLK NSDVGSLGRI VLPKREAEGN LPELSEKEGM
201: VLEMRDVDSV QSWYWSNNKS RMYVLENTGE FVKKNGVLMG DYLTIYEDES KNLYFSIRKH PHKQNDGRED ESMEVIEMNF YEDIMFDYIP NDEDDSIAML
301: LGNLNEHYPY PNDLMDLTVN LDQHQQATSS SPPADHMSSN DFLW

Best Arabidopsis Sequence Match ( AT1G28300.1 )
(BLAST)

001: MDNFLPFPSS NANSVQELSM DPNNNRSHFT TVPTYDHHQA QPHHFLPPFS YPVEQMAAVM NPQPVYLSEC YPQIPVTQTG SEFGSLVGNP CLWQERGGFL
101: DPRMTKMARI NRKNAMMRSR NNSSPNSSPS ELVDSKRQLM MLNLKNNVQI SDKKDSYQQS TFDNKKLRVL CEKELKNSDV GSLGRIVLPK RDAEANLPKL
201: SDKEGIVVQM RDVFSMQSWS FKYKFWSNNK SRMYVLENTG EFVKQNGAEI GDFLTIYEDE SKNLYFAMNG NSGKQNEGRE NESRERNHYE EAMLDYIPRD
301: EEEASIAMLI GNLNDHYPIP NDLMDLTTDL QHHQATSSSM PPEDHAYVGS SDDQVSFNDF EWW

Arabidopsis Description

LEC2B3 domain-containing transcription factor LEC2 [Source:UniProtKB/Swiss-Prot;Acc:Q1PFR7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.