Factsheet for Bra023968.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY13468	Canola	nucleus	99.74	99.74
CDX72340	Canola	nucleus	98.31	98.44
AT4G32010.1	Thale cress	nucleus	87.01	85.9
KRH37982	Soybean	cytosol, nucleus, plastid	4.68	81.82
KRH65426	Soybean	nucleus	58.96	50.17
KRH76125	Soybean	nucleus	58.31	49.45
VIT_08s0058g01300.t01	Wine grape	nucleus	56.75	47.29
Solyc10g075030.1.1	Tomato	nucleus	53.51	46.87
GSMUA_Achr5P27930_001	Banana	nucleus	34.94	46.38
Bra022801.1-P	Field mustard	nucleus	46.62	45.85
Bra018313.1-P	Field mustard	nucleus	46.75	45.57
GSMUA_Achr8P01750_001	Banana	nucleus	50.13	45.04
Bra021635.1-P	Field mustard	nucleus	44.81	44.57
TraesCS2D01G105300.1	Wheat	nucleus	49.61	41.93
TraesCS2A01G105600.1	Wheat	nucleus	50.39	40.89
TraesCS2B01G122500.1	Wheat	nucleus	50.13	40.63
EER99914	Sorghum	nucleus	50.0	40.23
Os07t0679700-01	Rice	nucleus	49.48	40.15
Zm00001d022440_P005	Maize	plastid	49.48	39.56
HORVU2Hr1G017760.4	Barley	plastid	49.87	37.07
Zm00001d007173_P003	Maize	mitochondrion, nucleus	46.62	35.47
Bra013535.1-P	Field mustard	nucleus	29.09	32.05
Bra032953.1-P	Field mustard	nucleus	8.44	21.1
PGSC0003DMT400057590	Potato	nucleus	12.6	21.0
Zm00001d045970_P001	Maize	mitochondrion	6.49	19.38
Zm00001d037893_P001	Maize	mitochondrion	6.75	18.57
Bra025229.1-P	Field mustard	nucleus	6.23	17.65
Zm00001d038148_P001	Maize	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	6.36	16.72
Bra030087.1-P	Field mustard	nucleus	6.49	14.53
Bra032890.1-P	Field mustard	nucleus	6.23	13.56
Bra013248.1-P	Field mustard	nucleus	9.74	10.46
Zm00001d029836_P001	Maize	plastid	0.78	6.82

Protein Annotations

MapMan:15.5.5.4	Gene3D:2.40.330.10	Gene3D:3.30.40.100	InterPro:B3_DNA-bd	EnsemblPlantsGene:Bra023968	EnsemblPlants:Bra023968.1
EnsemblPlants:Bra023968.1-P	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0006520	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0009058	GO:GO:0009987	GO:GO:0016597	GO:GO:0016740	GO:GO:0016743	GO:GO:0043565
InterPro:IPR003340	InterPro:IPR011124	InterPro:IPR015300	UniProt:M4E5B4	PFAM:PF02362	PFAM:PF07496
PFscan:PS50863	PFscan:PS51050	PANTHER:PTHR23336	PANTHER:PTHR23336:SF28	SMART:SM01019	SUPFAM:SSF101936
UniParc:UPI0002540FE2	InterPro:Znf_CW	SEG:seg	:	:	:

Description

AT4G32010 (E=0.0) HSL1, HSI2-L1, VAL2 | HSL1 (HSI2-LIKE 1); transcription factor

Coordinates

chrA03:+:28542650..28546675

Molecular Weight (calculated)

85222.0 Da

IEP (calculated)

7.478

GRAVY (calculated)

-0.577

Length

770 amino acids

Sequence
(BLAST)

001: MESTKVCMNA QCGSTSTSGE WKRGWPMRSG ELASLCDKCG SAYEQSIFCQ VFHAEESGWR ECNSCDKRLH CGCIASRFMM EVVDNGGVTC ISCAKKSGLF
101: SMNVESNGRE FPTFASAEHV SSVLERTNLK HLLHFQRISP TQPFLQMKQE ESLLPARLEA LRHNTEKKES AQPNLSISLG PTLMTSPFHD VDDRSKTTTP
201: IFQLASRSRQ LLPKPANSAP TTAPPMEPNG SLVSQIHVAR PPPEGRGKTQ LLPRYWPRIT DQELQQLSGQ YPHLSNSKII PLFEKVLSAS DAGRIGRLVL
301: PKACAEAYFP PISQPEGLPL KIQDIKGKEW VFQFRFWPNN NSRMYVLEGV TPCIQSMQLQ AGDTVTFSRT EPEGKLVMGY RKATNSTASQ MFKGSSEPNL
401: NMFSNNLSSG CGDINWSKLD KPEDMSKDGL MLQPSLISAR KRVRNIGTKS KRLLIDSVDV LELRLTWEEA QELLRPPQSA KPSICTVEDH DFEEYDEPPV
501: FGKRTVFVSR QTGEQEQWVQ CDACAKWRRL PVDTLLPPKW LCSDNLLDPG RSSCSAPDEL TPREQDTLLR LSKEFKRRRL ASSNQEEASA LDTLANAAIT
601: TTGEQGETEV AATTKHPRHR AGCSCIVCSQ PPSGKGKHKP SCTCTVCEAV KRRFKTLMMR KRNRGEAGQA SQQAQSDQCR EETEAESIPA VELPAAGGNI
701: DLNSDPASRV SMMSLLQAAT FPLEVYLKQK GVPNTAADQQ SSDIVSTENG SSSAAQEHDR DTSGAPEPMN

Best Arabidopsis Sequence Match ( AT4G32010.1 )
(BLAST)

001: MESIKVCMNA LCGAASTSGE WKKGWPMRSG DLASLCDKCG CAYEQSIFCE VFHAKESGWR ECNSCDKRLH CGCIASRFMM ELLENGGVTC ISCAKKSGLI
101: SMNVSHESNG KDFPSFASAE HVGSVLERTN LKHLLHFQRI DPTHSSLQMK QEESLLPSSL DALRHKTERK ELSAQPNLSI SLGPTLMTSP FHDAAVDDRS
201: KTNSIFQLAP RSRQLLPKPA NSAPIAAGME PSGSLVSQIH VARPPPEGRG KTQLLPRYWP RITDQELLQL SGQYPHLSNS KIIPLFEKVL SASDAGRIGR
301: LVLPKACAEA YFPPISLPEG LPLKIQDIKG KEWVFQFRFW PNNNSRMYVL EGVTPCIQSM QLQAGDTVTF SRTEPEGKLV MGYRKATNST ATQMFKGSSE
401: PNLNMFSNSL NPGCGDINWS KLEKSEDMAK DNLFLQSSLT SARKRVRNIG TKSKRLLIDS VDVLELKITW EEAQELLRPP QSTKPSIFTL ENQDFEEYDE
501: PPVFGKRTLF VSRQTGEQEQ WVQCDACGKW RQLPVDILLP PKWSCSDNLL DPGRSSCSAP DELSPREQDT LVRQSKEFKR RRLASSNEKL NQSQDASALN
601: SLGNAGITTT GEQGEITVAA TTKHPRHRAG CSCIVCSQPP SGKGKHKPSC TCTVCEAVKR RFRTLMLRKR NKGEAGQASQ QAQSQSECRD ETEVESIPAV
701: ELAAGENIDL NSDPGASRVS MMRLLQAAAF PLEAYLKQKA ISNTAGEQQS SDMVSTEHGS SSAAQETEKD TTNGAHDPVN

Arabidopsis Description

VAL2B3 domain-containing transcription repressor VAL2 [Source:UniProtKB/Swiss-Prot;Acc:Q5CCK4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.