Factsheet for Bra018313.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra040510.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G30470.1	Bra040510.1-P	AT3G01320.1	19962994

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY10738	Canola	nucleus	98.23	98.6
CDY02066	Canola	nucleus	94.94	95.66
Bra022801.1-P	Field mustard	nucleus	80.0	80.72
Bra021635.1-P	Field mustard	nucleus	76.71	78.29
AT2G30470.1	Thale cress	nucleus	74.05	74.05
Bra023968.1-P	Field mustard	nucleus	45.57	46.75
Solyc06g082520.2.1	Tomato	nucleus	48.48	45.33
KRH30646	Soybean	nucleus	50.63	43.91
VIT_06s0004g08100.t01	Wine grape	nucleus	47.85	43.5
KRH72829	Soybean	nucleus	39.49	43.45
GSMUA_Achr5P27930_001	Banana	nucleus	31.77	43.28
KRG98129	Soybean	nucleus	50.63	42.78
KRH17186	Soybean	nucleus	38.73	42.27
GSMUA_Achr8P01750_001	Banana	nucleus	44.43	40.96
TraesCS2D01G105300.1	Wheat	nucleus	44.68	38.75
Os07t0679700-01	Rice	nucleus	46.33	38.57
TraesCS2A01G105600.1	Wheat	nucleus	45.95	38.25
EER99914	Sorghum	nucleus	46.33	38.24
TraesCS2B01G122500.1	Wheat	nucleus	45.7	38.0
Zm00001d022440_P005	Maize	plastid	45.32	37.18
HORVU2Hr1G017760.4	Barley	plastid	45.06	34.36
Zm00001d007173_P003	Maize	mitochondrion, nucleus	43.04	33.6
Bra013535.1-P	Field mustard	nucleus	28.35	32.05
PGSC0003DMT400057590	Potato	nucleus	11.9	20.35
Bra032953.1-P	Field mustard	nucleus	7.85	20.13
Bra025229.1-P	Field mustard	nucleus	6.71	19.49
Zm00001d037893_P001	Maize	mitochondrion	6.58	18.57
Zm00001d045970_P001	Maize	mitochondrion	5.95	18.22
Zm00001d038148_P001	Maize	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	6.33	17.06
Bra030087.1-P	Field mustard	nucleus	6.46	14.83
Bra032890.1-P	Field mustard	nucleus	6.2	13.84
Bra013248.1-P	Field mustard	nucleus	10.13	11.16
Zm00001d029836_P001	Maize	plastid	0.51	4.55

Protein Annotations

MapMan:15.5.5.4	Gene3D:2.40.330.10	Gene3D:3.30.40.100	InterPro:B3_DNA-bd	EnsemblPlantsGene:Bra018313	EnsemblPlants:Bra018313.1
EnsemblPlants:Bra018313.1-P	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009987
InterPro:IPR003340	InterPro:IPR011124	InterPro:IPR015300	UniProt:M4DP72	PFAM:PF02362	PFAM:PF07496
PFscan:PS50863	PFscan:PS51050	PANTHER:PTHR23336	PANTHER:PTHR23336:SF28	SMART:SM01019	SUPFAM:SSF101936
UniParc:UPI0002547B98	InterPro:Znf_CW	SEG:seg	:	:	:

Description

AT2G30470 (E=1e-313) HSI2, VAL1 | HSI2 (HIGH-LEVEL EXPRESSION OF SUGAR-INDUCIBLE GENE 2); transcription factor/ transcription repressor

Coordinates

chrA05:+:7384942..7387947

Molecular Weight (calculated)

85951.2 Da

IEP (calculated)

7.565

GRAVY (calculated)

-0.624

Length

790 amino acids

Sequence
(BLAST)

001: MGSKVCMNAS CGSTSSVEWK KGWPLRSGAL ADLCFRCGSA YETSRFCETF HMEQSGWREC YLCNKRLHCG CIASKLVVEF MDYGGVGCST CTNSHSKRGE
101: NPGVFSRLPM NMQQTNGESG MSIDGVVRSE ANLFSQPLVS GDDKREEFTP HRGFGNLMKQ DNNVTTTGYT HESSSSSPAQ PSLNMALATL PYSPSFATPV
201: VDGNKLMGAG GGGVASSQSR LFQCSASSIL QKPSKSVLGT PPPGTSKSAQ ARIGRPPVEG RGKGHLLPRY WPKYTDKELQ QISGNLNLNI VPLFEKTLSA
301: SDAGRIGRLV LPKACAEAYF PPISQSEGIP LKVQDVRGKE WTFQFRFWPN NNSRMYVLEG VTPCIQSMRL QAGDTVTFSR VDPGGKLIMG ARKATYTVDM
401: QGCGFANGAS NEDTSSSGVT ENLTSINAPS CPSQMLEGLP EHLGSPHGGN GVKKSEINGG DDQSRGKEKK RTRTLGAKNK RLLLHSEESM ELRVTWEEAQ
501: ELLRPSANAK PTVVVIEEHE FEEFEEPPVF GKRTIVVTSR PSGEQERWGS CDDCSKWRRL PVDALLPAKW TCSDNVWDSS RCSCSAPEES LKELENVLRA
601: GKEYKKRRIG VSQTARNEQE PSGLDALASA AVLGDALDES EVATTTRHPR HRVGCSCIVC IQPPSGKGRH KPTCGCTVCS TVKRRFKTLM MRRKKKQLEC
701: DGTAAVDEEN KEGVEPEKNE GEKEGRIDLN SDPYNREDAE AVAVEKREES KKSEGGVSWG VSQGGGVLGE TEVGGGEAEK TTSEEQKVTS

Best Arabidopsis Sequence Match ( AT2G30470.1 )
(BLAST)

001: MFEVKMGSKM CMNASCGTTS TVEWKKGWPL RSGLLADLCY RCGSAYESSL FCEQFHKDQS GWRECYLCSK RLHCGCIASK VTIELMDYGG VGCSTCACCH
101: QLNLNTRGEN PGVFSRLPMK TLADRQHVNG ESGGRNEGDL FSQPLVMGGD KREEFMPHRG FGKLMSPEST TTGHRLDAAG EMHESSPLQP SLNMGLAVNP
201: FSPSFATEAV EGMKHISPSQ SNMVHCSASN ILQKPSRPAI STPPVASKSA QARIGRPPVE GRGRGHLLPR YWPKYTDKEV QQISGNLNLN IVPLFEKTLS
301: ASDAGRIGRL VLPKACAEAY FPPISQSEGI PLKIQDVRGR EWTFQFRYWP NNNSRMYVLE GVTPCIQSMM LQAGDTVTFS RVDPGGKLIM GSRKAANAGD
401: MQGCGLTNGT STEDTSSSGV TENPPSINGS SCISLIPKEL NGMPENLNSE TNGGRIGDDP TRVKEKKRTR TIGAKNKRLL LHSEESMELR LTWEEAQDLL
501: RPSPSVKPTI VVIEEQEIEE YDEPPVFGKR TIVTTKPSGE QERWATCDDC SKWRRLPVDA LLSFKWTCID NVWDVSRCSC SAPEESLKEL ENVLKVGREH
601: KKRRTGESQA AKSQQEPCGL DALASAAVLG DTIGEPEVAT TTRHPRHRAG CSCIVCIQPP SGKGRHKPTC GCTVCSTVKR RFKTLMMRRK KKQLERDVTA
701: AEDKKKKDME LAESDKSKEE KEVNTARIDL NSDPYNKEDV EAVAVEKEES RKRAIGQCSG VVAQDASDVL GVTELEGEGK NVREEPRVSS

Arabidopsis Description

VAL1B3 domain-containing transcription repressor VAL1 [Source:UniProtKB/Swiss-Prot;Acc:Q8W4L5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.