Factsheet for Bra040510.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 4
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002788.1-P
Bra005803.1-P
Bra006218.1-P
Bra006851.1-P
Bra008800.1-P
Bra009457.1-P
Bra018313.1-P
Bra021635.1-P
Bra022149.1-P
Bra022801.1-P
Bra023437.1-P
Bra024925.1-P
Bra028791.1-P
Bra035633.1-P
Bra040131.1-P	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G01320.1	Bra018313.1-P	AT2G30470.1	19962994
AT3G01320.1	Bra021635.1-P	AT2G30470.1	19962994
AT3G01320.1	Bra022801.1-P	AT2G30470.1	19962994
AT3G01320.1	Bra040131.1-P	AT4G38130.1	23371947
AT3G01320.1	Bra040131.1-P	AT4G38130.1	23371947
AT3G01320.1	Bra005803.1-P	AT5G04390.1	19962994
AT3G01320.1	Bra009457.1-P	AT5G04390.1	19962994
AT3G01320.1	Bra028791.1-P	AT5G04390.1	19962994
AT3G01320.1	Bra006218.1-P	AT5G13820.1	19962994
AT3G01320.1	Bra008800.1-P	AT5G13820.1	19962994
AT3G01320.1	Bra023437.1-P	AT5G13820.1	19962994
AT3G01320.1	Bra022149.1-P	AT5G47660.1	19962994
AT3G01320.1	Bra024925.1-P	AT5G47660.1	19962994
AT3G01320.1	Bra002788.1-P	AT5G56860.1	19962994
AT3G01320.1	Bra006851.1-P	AT5G56860.1	19962994
AT3G01320.1	Bra035633.1-P	AT5G56860.1	19962994

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY28683	Canola	mitochondrion, nucleus	98.59	98.51
AT3G01320.1	Thale cress	mitochondrion, nucleus	80.3	78.72
Bra006276.1-P	Field mustard	nucleus	69.14	69.09
Bra023501.1-P	Field mustard	nucleus	67.58	68.04
KRH18559	Soybean	nucleus	21.49	61.49
KRG93437	Soybean	nucleus	58.14	55.78
Solyc02g087370.1.1	Tomato	cytosol	7.96	55.73
VIT_14s0066g02330.t01	Wine grape	nucleus	56.65	55.02
KRH18561	Soybean	nucleus	35.84	53.44
Solyc02g067570.2.1	Tomato	nucleus	52.79	52.67
Solyc02g087380.1.1	Tomato	nucleus, plastid	5.35	52.55
Solyc02g087360.2.1	Tomato	nucleus	52.04	52.12
PGSC0003DMT400003538	Potato	nucleus	51.67	51.22
Bra008727.1-P	Field mustard	cytosol	14.94	50.89
Bra003968.1-P	Field mustard	cytosol	5.65	49.03
Bra024645.1-P	Field mustard	cytosol, mitochondrion, nucleus	3.2	47.78
Bra037066.1-P	Field mustard	nucleus	9.59	46.4
Bra037065.1-P	Field mustard	nucleus	8.25	46.06
Bra019933.1-P	Field mustard	nucleus	34.35	45.47
Bra012419.1-P	Field mustard	cytosol	2.9	45.35
Bra035418.1-P	Field mustard	nucleus	36.95	44.9
Bra016241.1-P	Field mustard	nucleus	42.97	44.84
Bra017891.1-P	Field mustard	nucleus	32.64	44.8
Bra003967.1-P	Field mustard	nucleus	43.27	44.26
Bra027831.1-P	Field mustard	nucleus	24.24	43.7
PGSC0003DMT400003545	Potato	cytosol, mitochondrion	14.72	38.67
Solyc02g087390.1.1	Tomato	cytosol	13.9	36.74
Bra007893.1-P	Field mustard	cytosol	2.08	35.0
Bra007894.1-P	Field mustard	nucleus	7.43	23.75
Bra024644.1-P	Field mustard	mitochondrion	4.76	19.05

Protein Annotations

Gene3D:1.20.1160.11	MapMan:12.3.2.4.2	EnsemblPlantsGene:Bra040510	EnsemblPlants:Bra040510.1	EnsemblPlants:Bra040510.1-P	ncoils:Coil
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045892	InterPro:HDAC_interact_dom
InterPro:IPR003822	UniProt:M4FHD2	InterPro:PAH	InterPro:PAH_sf	PFAM:PF02671	PFAM:PF08295
PFAM:PF16879	PFscan:PS51477	PANTHER:PTHR12346	PANTHER:PTHR12346:SF21	SMART:SM00761	SUPFAM:SSF47762
InterPro:Sin3_C	UniParc:UPI0002545091	SEG:seg	:	:	:

Description

AT5G15020 (E=0.0) SNL2 | SNL2 (SIN3-LIKE 2)

Coordinates

chrA01:-:28554692..28560941

Molecular Weight (calculated)

153134.0 Da

IEP (calculated)

5.352

GRAVY (calculated)

-0.789

Length

1345 amino acids

Sequence
(BLAST)

0001: MKRIRDGSGS QFRRTLGSSR GELYGQSPVP GSGDTEEGRG EGGRIASGDV TSQNVKDALS YLKDVKDMFH DQRETYDRFL EVMKDFKALR IDTRGVIARV
0101: KELFKGHNHL IYGFNTFLPK GFEITLIEED EAPPKKTVDF EEAIHFVNKI KTRFKHDEHV YKSFLGILNL YRKEKKGISE VYNEVSILFE GHSDLLEEFT
0201: RFLPASLPSH SAAQHSRSQA QRYNDPRSGP PLIRQMQVEK EHRRERAVAS RSDYSADHND LCDDKAMVKM QREQRKRADK ENRERRGRVL DDREADQDNL
0301: HHFPEIRKSS RRAECPEAYS GSASHSEKDN LKSMYNQAFV FCEKVKERLC SQDDYQTFLK CLNLFSNGII QTKELQNMVS DLLGKYPDLM DEFSQFFERC
0401: ESIDGFQHLA GAMSKKSFSS EEQASRSMEV EEKEREHKLD LEVVNETEQY KEEYVGKSIQ ELDLSNCECC TPSYRLLPSD YPVRTASQRS ELGAEVLNDR
0501: WVSVTSGSED YSFKHMRRNP YEEILFRCED DRFELDMLLE SVSSAARTAE NLLNIITEKK IAFSGSFRIE DHFTALNLRC IERLYGEHGL DVIDILHKNP
0601: ATALPVILTR LKQKQDEWKK CRDDFDKIWA KVYAKNHYKS LDHRSFYFKQ QDSKNSSAKS LVAEIKELKE KSQNEDDILL SISAGYRQPI NPNLDYEYFS
0701: RDMHEDLYKL VHFSCEELCS TKEQLSKVLR LWENFLEPVL GVPPRAKGTD PVEDVPKTLD VNHSTSTNEE ANGSCGADTA TLASRKLISV ANGDQNASSG
0801: ASNLGEIGLL NKDSTGKEDL QDADTANGDG VTSSAVKLQK EHETGNRADQ RSVMPIPMDI NERASTSNLS TPSGENNHGV LEKEDLAGSH EIQAKPSSTL
0901: SDIHHIKTSP STQAGDGGKS IALASGIRSD SSTDNMNSDE PEGPLTIEKE EGELSPNGDF DDNVGLHEDL GVKSTSKPEN LADAEVENED EDSENASEGG
1001: EECSHDENRE EESGEHEEVD SQSLAGDTEL LRQSERVLLS ARPLSKHVAA VLRDGRTKDI RVFYGNDDFY VLFRLHQILY ERILSAKRNC SGDELKSKNS
1101: KDTDSLDPYA RFMKGLYGLL DGSVENTKFE DECRAIFGNQ SYVLFTLNKV IYKLVKQLQA VVADEMDNKL IQLYEYEKSR KPGRVIDSVY YENARVLVHD
1201: ENVYRLECSS SPSRLSIQLM DNIVEKPEPY AVSMDPMFAS YLQTEFLSTS REKKEEGHNI VLRRNRRPYS GLDDLAALCK AMEGVEVVNG LECKMSCSSY
1301: KVSYVLDTQD FFHRKKKKKK KIEHISQQRN KDRVERFHRF LSASR

Best Arabidopsis Sequence Match ( AT3G01320.1 )
(BLAST)

0001: MKRIRDDVYA SGSQFRRPLG SSRGQLCGQS PVHGSGDTEE EEEGGSRRVS QKLTTNDALS YLREVKEMFQ DQREKYDRFL EVMKDFKAQR TDTGGVIARV
0101: KELFKGHNNL IYGFNTFLPK GYEITLIEED DALPKKTVEF EQAINFVNKI KMRFKHDEHV YKSFLEILNM YRKENKEIKE VYNEVSILFQ GHLDLLEQFT
0201: RFLPASLPSH SAAQHSRSQA QQYSDRGSDP PLLHQMQVEK ERRRERAVAL RGDYSVERYD LNDDKTMVKI QREQRKRLDK ENRARRGRDL DDREAGQDNL
0301: HHFPEKRKSS RRAEALEAYS GSASHSEKDN LKSMYKQAFV FCEKVKDRLC SQDDYQTFLK CLNIFSNGII QRKDLQNLVS DLLGKFPDLM DEFNQFFERC
0401: ESITDGFQRL AGVMSKKLFS SEEQLSRPMK VEEKESEHKP ELEAVKETEQ CKKEYMGKSI QELDLSDCEC CTPSYRLLPA DYPIPIASQR SELGAEVLND
0501: HWVSVTSGSE DYSFKHMRRN QYEESLFRCE DDRFELDMLL ESVSSAARSA ESLLNIITEK KISFSGSFRI EDHFTALNLR CIERLYGDHG LDVIDILNKN
0601: PATALPVILT RLKQKQGEWK KCRDDFDKVW ANVYAKNHYK SLDHRSFYFK QQDSKNLSAK SLLAEIKELK EKSQNDDDVL LSISAGYRQP INPNLEYEYL
0701: NRAIHEDMFK VVQFSCEELC STKEQLSKVL RLWENFLEAV LGVPPRAKGT DLVEDVVINP KTLDVNHSTS PNGEAAVSSG GDTARLASRK LKSAANGDEN
0801: SSSGTFKHGI GLLNKDSTGK ENLEDVEIAN RDGVACSAVK PQKEQETGNE AEKRFGKPIP MDISERAAIS SISIPSGAEN NHCVVGKEVL PGAHEIQAKP
0901: SDTLTDIHHD VDSIETVHST QGGDVGNSIV LANGLRSDSS KGTRNSDDPE GPSRNEKEEG ELSPNGDFED NFGVYKDHGV KSTSKPENSA EAEVEADAEV
1001: ENEDDADDVD SENASEASGT ESGGDVCSQD EDREEENGEH DEIDGKAESE GEAEGMDPHL LEGESELLPQ SERVLLSVRP LSKHVAAVLC DERTKDLQVF
1101: YGNDDFYVLF RLHQILYERI LYAKRNCSGG ELKSKNLKDT NAGDPYARFM RVLYGLLDGS AENTKFEDEC RAIIGNQSYV LFTLDKLIYR LVKQLQAIVA
1201: DEMDNKLLQL YEYEKSRKPG RVIDSVYYEN VRVLVHEENI YRLECSSLPS RLSIQLMDNI IEKPEAYAVS MDPTFASYMQ TELLSVSSGK KEEGHDIVLQ
1301: RNLTGLYDLC KAMEGVEVVN GLECKMSCSS YKIAYVLDTE DYFHRKKKKK KTEQLWQRNK VRVERFHRFL SA

Arabidopsis Description

SNL1Paired amphipathic helix protein Sin3-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRH9]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.