Factsheet for Solyc02g087390.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
nucleus 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc04g011650.2.1
Solyc05g054410.2.1
Solyc06g082520.2.1
Solyc09g008440.1.1
Solyc09g091440.2.1	nucleus
Solyc11g012720.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G01320.1	Solyc06g082520.2.1	AT2G30470.1	19962994
AT3G01320.1	Solyc09g091440.2.1	AT4G38130.1	23371947
AT3G01320.1	Solyc09g091440.2.1	AT4G38130.1	23371947
AT3G01320.1	Solyc09g008440.1.1	AT5G04390.1	19962994
AT3G01320.1	Solyc04g011650.2.1	AT5G13820.1	19962994
AT3G01320.1	Solyc05g054410.2.1	AT5G13820.1	19962994
AT3G01320.1	Solyc11g012720.1.1	AT5G47660.1	19962994

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400003545	Potato	cytosol, mitochondrion	82.91	82.42
Solyc02g087380.1.1	Tomato	nucleus, plastid	13.36	49.63
Solyc02g087370.1.1	Tomato	cytosol	16.9	44.79
Solyc07g041320.1.1	Tomato	cytosol	14.73	35.55
Solyc04g025000.1.1	Tomato	cytosol, mitochondrion, nucleus	13.16	34.72
KRH18559	Soybean	nucleus	31.04	33.62
Solyc10g047970.1.1	Tomato	cytosol	13.36	30.09
Solyc10g047980.1.1	Tomato	nucleus	12.57	29.22
Solyc10g048000.1.1	Tomato	endoplasmic reticulum	16.9	29.05
Solyc11g045320.1.1	Tomato	cytosol	7.86	27.59
Solyc10g047990.1.1	Tomato	cytosol	8.06	27.52
Solyc04g024990.1.1	Tomato	cytosol	14.34	26.74
Solyc02g087360.2.1	Tomato	nucleus	44.79	16.98
Solyc02g067570.2.1	Tomato	nucleus	42.83	16.17
VIT_14s0066g02330.t01	Wine grape	nucleus	42.44	15.6
KRG93437	Soybean	nucleus	41.06	14.91
CDX85568	Canola	nucleus	39.1	14.9
Bra023501.1-P	Field mustard	nucleus	39.1	14.9
CDX70587	Canola	nucleus	39.49	14.83
Bra006276.1-P	Field mustard	nucleus	39.1	14.78
CDX78604	Canola	nucleus	39.1	14.74
CDX91007	Canola	nucleus	38.31	14.74
AT5G15020.1	Thale cress	nucleus	38.51	14.34
Solyc05g006540.2.1	Tomato	nucleus	37.92	14.19
AT3G01320.1	Thale cress	mitochondrion, nucleus	38.11	14.14
Bra040510.1-P	Field mustard	mitochondrion, nucleus	36.74	13.9
CDY28683	Canola	mitochondrion, nucleus	36.54	13.82
KRH18561	Soybean	nucleus	10.02	5.65

Protein Annotations

Gene3D:1.20.1160.11	MapMan:35.1	GO:GO:0000118	GO:GO:0000122	GO:GO:0000785	GO:GO:0001106
GO:GO:0003674	GO:GO:0003824	GO:GO:0004407	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005654	GO:GO:0006139	GO:GO:0006355	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016575	GO:GO:0016787
GO:GO:0019538	InterPro:IPR003822	UniProt:K4BBP6	InterPro:PAH	InterPro:PAH_sf	PFAM:PF02671
PFscan:PS51477	PANTHER:PTHR12346	PANTHER:PTHR12346:SF8	SUPFAM:SSF47762	EnsemblPlantsGene:Solyc02g087390.1	EnsemblPlants:Solyc02g087390.1.1
UniParc:UPI0002767F3B	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr2:-:49845818..49849206

Molecular Weight (calculated)

60014.6 Da

IEP (calculated)

7.510

GRAVY (calculated)

-0.604

Length

509 amino acids

Sequence
(BLAST)

001: MARLREDVSG GKERFRRQIN YSRRESRRSS QVVENGLGSR IAGSGLTFLR PCNSNLRTEE ALSYLKEVKD TFQGKVKYEM FLDIMKHFKA QRIDTVTVIE
101: RVKDLFKGYP RLIMGFNTFL PEGYTITPNQ EDKPRVEFGE AVNFVNKIKT RFQNADQVYR YFLDILNVYR KKQKGIDEVY REVAILFNGH PDLLDEFTRF
201: LPDTNYKEDL SKQQHTGKMN SFGEFEDALK SSCSKGFIFC ERVKERLQSP ADYLKFLTCL HIYSTETIAR NKLQSLVAEI LGKYLDLMEG FNEFLDLYDR
301: VDTYTKGFTF CEEVKDRLGS PVDYQTFLKC LHDYSREIIT REQLHSLVAQ VLGKHPCLME RFNVFIYCYE RAGVMTKWND SKLVKEEEKK CKTEAPSTYQ
401: VKQETEAPST YQVKHETEDP STYQIKQENE ARPQGIKFEE AASFVEKVKE LFRQDNHVYE SFLNILKMYY REHENKYDVY HKIAILFKDH SDLLDEFAKF
501: LQILQLISC

Best Arabidopsis Sequence Match ( AT3G01320.2 )
(BLAST)

0001: MKRIRDDVYA SGSQFRRPLG SSRGQLCGQS PVHGSGDTEE EEEGGSRRVS QKLTTNDALS YLREVKEMFQ DQREKYDRFL EVMKDFKAQR TDTGGVIARV
0101: KELFKGHNNL IYGFNTFLPK GYEITLIEED DALPKKTVEF EQAINFVNKI KMRFKHDEHV YKSFLEILNM YRKENKEIKE VYNEVSILFQ GHLDLLEQFT
0201: RFLPASLPSH SAAQHSRSQA QQYSDRGSDP PLLHQMQVEK ERRRERAVAL RGDYSVERYD LNDDKTMVKI QREQRKRLDK ENRARRGRDL DDREAGQDNL
0301: HHFPEKRKSS RRAEALEAYS GMYKQAFVFC EKVKDRLCSQ DDYQTFLKCL NIFSNGIIQR KDLQNLVSDL LGKFPDLMDE FNQFFERCES ITDGFQRLAG
0401: VMSKKLFSSE EQLSRPMKVE EKESEHKPEL EAVKETEQCK KEYMGKSIQE LDLSDCECCT PSYRLLPADY PIPIASQRSE LGAEVLNDHW VSVTSGSEDY
0501: SFKHMRRNQY EESLFRCEDD RFELDMLLES VSSAARSAES LLNIITEKKI SFSGSFRIED HFTALNLRCI ERLYGDHGLD VIDILNKNPA TALPVILTRL
0601: KQKQGEWKKC RDDFDKVWAN VYAKNHYKSL DHRSFYFKQQ DSKNLSAKSL LAEIKELKEK SQNDDDVLLS ISAGYRQPIN PNLEYEYLNR AIHEDMFKVV
0701: QFSCEELCST KEQLSKVLRL WENFLEAVLG VPPRAKGTDL VEDVVINPKT LDVNHSTSPN GEAAVSSGGD TARLASRKLK SAANGDENSS SGTFKHGIGL
0801: LNKDSTGKEN LEDVEIANRD GVACSAVKPQ KEQETGNEAE KRFGKPIPMD ISERAAISSI SIPSGAENNH CVVGKEVLPG AHEIQAKPSD TLTDIHHDVD
0901: SIETVHSTQG GDVGNSIVLA NGLRSDSSKG TRNSDDPEGP SRNEKEEGEL SPNGDFEDNF GVYKDHGVKS TSKPENSAEA EVEADAEVEN EDDADDVDSE
1001: NASEASGTES GGDVCSQDED REEENGEHDE IDGKAESEGE AEGMDPHLLE GESELLPQSE RVLLSVRPLS KHVAAVLCDE RTKDLQVFYG NDDFYVLFRL
1101: HQILYERILY AKRNCSGGEL KSKNLKDTNA GDPYARFMRV LYGLLDGSAE NTKFEDECRA IIGNQSYVLF TLDKLIYRLV KQLQAIVADE MDNKLLQLYE
1201: YEKSRKPGRV IDSVYYENVR VLVHEENIYR LECSSLPSRL SIQLMDNIIE KPEAYAVSMD PTFASYMQTE LLSVSSGKKE EGHDIVLQRN LTGLYDLCKA
1301: MEGVEVVNGL ECKMSCSSYK IAYVLDTEDY FHRKKKKKKT EQLWQRNKVR VERFHRFLSA

Arabidopsis Description

SNL1Paired amphipathic helix protein Sin3-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRH9]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.