Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX85568 | Canola | nucleus | 92.89 | 91.99 |
| CDX70587 | Canola | nucleus | 84.66 | 82.66 |
| CDX78604 | Canola | nucleus | 84.28 | 82.59 |
| CDY64434 | Canola | nucleus | 3.78 | 80.65 |
| AT5G15020.1 | Thale cress | nucleus | 82.62 | 79.96 |
| KRH18559 | Soybean | nucleus | 23.96 | 67.45 |
| CDY28683 | Canola | mitochondrion, nucleus | 66.89 | 65.75 |
| CDY23529 | Canola | cytosol | 7.33 | 61.39 |
| CDY28682 | Canola | nucleus | 56.99 | 60.86 |
| CDY48380 | Canola | cytosol | 7.26 | 60.76 |
| CDY70453 | Canola | cytosol | 15.12 | 59.7 |
| KRG93437 | Soybean | nucleus | 61.83 | 58.35 |
| CDY71516 | Canola | cytosol, mitochondrion, nucleus | 11.41 | 58.08 |
| VIT_14s0066g02330.t01 | Wine grape | nucleus | 59.33 | 56.68 |
| Solyc02g087380.1.1 | Tomato | nucleus, plastid | 5.82 | 56.2 |
| Solyc02g087370.1.1 | Tomato | cytosol | 8.01 | 55.21 |
| KRH18561 | Soybean | nucleus | 37.04 | 54.32 |
| Solyc02g087360.2.1 | Tomato | nucleus | 54.04 | 53.24 |
| Solyc02g067570.2.1 | Tomato | nucleus | 54.12 | 53.12 |
| CDY48381 | Canola | cytosol | 6.2 | 52.9 |
| CDY23528 | Canola | cytosol | 6.2 | 52.9 |
| CDY31594 | Canola | nucleus | 15.87 | 52.9 |
| CDY55066 | Canola | cytosol | 15.8 | 52.51 |
| PGSC0003DMT400003538 | Potato | nucleus | 53.82 | 52.47 |
| CDY16234 | Canola | cytosol, mitochondrion, nucleus | 3.25 | 47.78 |
| CDY14679 | Canola | cytosol, mitochondrion, nucleus | 3.25 | 47.78 |
| CDY06480 | Canola | cytosol | 8.47 | 47.46 |
| CDY30912 | Canola | nucleus | 37.64 | 47.43 |
| CDY11625 | Canola | nucleus | 45.12 | 46.28 |
| CDY24499 | Canola | nucleus | 38.7 | 46.17 |
| CDY67989 | Canola | nucleus | 5.44 | 46.15 |
| CDY23527 | Canola | nucleus | 45.12 | 46.14 |
| CDY08302 | Canola | cytosol | 8.92 | 46.09 |
| CDY38781 | Canola | nucleus | 44.9 | 46.08 |
| CDX68358 | Canola | nucleus | 44.67 | 46.03 |
| CDY37976 | Canola | nucleus | 34.32 | 45.95 |
| CDX93425 | Canola | nucleus | 34.62 | 45.08 |
| CDY33612 | Canola | nucleus | 39.0 | 44.75 |
| CDY08301 | Canola | cytosol | 9.3 | 44.24 |
| CDY45153 | Canola | nucleus | 31.97 | 43.7 |
| CDY40291 | Canola | cytoskeleton, cytosol, nucleus | 2.8 | 43.02 |
| CDY28457 | Canola | cytoskeleton, cytosol, nucleus | 2.65 | 41.67 |
| PGSC0003DMT400003545 | Potato | cytosol, mitochondrion | 15.95 | 41.21 |
| CDY31595 | Canola | nucleus | 21.54 | 41.19 |
| CDY55065 | Canola | nucleus | 21.47 | 40.63 |
| CDY66875 | Canola | mitochondrion | 4.91 | 40.62 |
| CDY42981 | Canola | mitochondrion | 4.91 | 40.62 |
| CDY03764 | Canola | cytosol | 4.84 | 39.51 |
| CDY42984 | Canola | cytosol, mitochondrion, nucleus | 4.69 | 38.75 |
| Solyc02g087390.1.1 | Tomato | cytosol | 14.74 | 38.31 |
| CDY42979 | Canola | cytosol, mitochondrion, nucleus | 4.16 | 37.93 |
| CDY64433 | Canola | cytosol | 6.65 | 33.21 |
| CDY42983 | Canola | nucleus | 3.93 | 32.1 |
| CDY03763 | Canola | cytosol | 5.59 | 25.96 |
| CDY42986 | Canola | cytosol | 3.93 | 24.88 |
| CDY16235 | Canola | mitochondrion | 4.99 | 19.64 |
| CDY14678 | Canola | cytosol | 4.84 | 18.5 |
Protein Annotations
| Gene3D:1.20.1160.11 | MapMan:12.3.2.4.2 | GO:A0A078DQ05 | EnsemblPlants:CDX91007 | ProteinID:CDX91007 | ProteinID:CDX91007.1 |
| ncoils:Coil | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00151769001 | InterPro:HDAC_interact_dom | InterPro:IPR003822 | InterPro:PAH | InterPro:PAH_sf |
| PFAM:PF02671 | PFAM:PF08295 | PFAM:PF16879 | PFscan:PS51477 | PANTHER:PTHR12346 | PANTHER:PTHR12346:SF21 |
| SMART:SM00761 | SUPFAM:SSF47762 | InterPro:Sin3_C | UniParc:UPI0004EDE9B8 | SEG:seg | : |
Description
BnaC02g05900D
Coordinates
chrLK031865:+:308202..314535
Molecular Weight (calculated)
150705.0 Da
IEP (calculated)
5.548
GRAVY (calculated)
-0.808
Length
1323 amino acids
Sequence
(BLAST)
(BLAST)
0001: MKRMRDDVYS SGSQFKRSFT SSRPDSYVQS PIPASGGTGG GGRIGDQGVN SQKLTTHDAL SYLKDVKEMF QDQRSKYDMF LEVMKDFKAQ RTDTSGVIER
0101: VKELFKGHNN LIFGFNTFLP KGFEITLDDL EEDAPPKKTV EFEEAISFVN KIKKRFQRDE DVYKSFLEIL NMYRKDDKDI TEVYNEVSTL FEDHPDLLEG
0201: FTRFLPESLA PHSAAQLIRS QAHRYDDRGS GPPVVRRMFI DKDRRRRERA VASRGDRDHS VDRSDLNDDK AVVKMHRDPR KRGDKENRER RSRDLDHGEA
0301: AQDNLHHFPE KRKSSRKTEE FDAYSGHASH SDKSKLKGMY NQAFVFCEKV KEKLCSQDDY QTFLKFLNLF SSGIIHRKKL QNLVSDLLGK FPDLLDEFNQ
0401: FFERCESNDS FQHLAGVMSN KSLSSDEHLS RLMKAEEKER DDKRDLEAAM EKERSKEKYM EKSIQELDLS ECERCTPSYR LLPSDYPIPS VRHRQKSVAA
0501: VLNDHWVSVT SGSEDSFKHM RRNQYEESLF RCEDDRFELD MLLESVGSAA KSAEDLLNTI IEKKISFEGS FRVEDHFTAL NLRCIERLYG DHGLDVTDLI
0601: RKNPAAALPV ILTRLKQKQY EWTKCREDFN VVWKDVYAKN HYKSLDHRSF YFKQQDSKKL SAKALVADIK DLKEKSRKED DVHLSISAGY RQPIVPHYEY
0701: EYTDRTIHED LFKLVQFSCE EICSSKEQIS KVLRLWNNFL ELMLGVPPRD KGSDSVEDVA ETKHHVTRGE ANVSSDAVSL VSRQLKFAAN GDEYGSSGIS
0801: KHAGAGKDVD QASKDVATFS AVNPQKDRET GNGADKRSGG VDERVATSSA SFPSGVENKN DNIDAIQRTQ VGDIGRTIAI ANGVKPDTSK ASSNQDESGS
0901: PSKIEEEEGE LSPIGDSEDN NYVVYEDRGL KSTAKPEHSV EAVGENDDDA DDEDGDDASE GGEDASGTES VGDECSQDDN GVEEEGDHGK AESEGEAEGM
1001: ESHLIEDSGL LPLSERVLLS VKPLSKHVTA ADERKQDSRV FYGNDDFYVL FRLHRILYER ISSAKTYCNR RNTKDSTSSP DPYARFMSAL FSLLNGSAES
1101: SKFEDECRAI IGNQSYVLFT LEKLIYKLVK QLQAVVADDT DNKLLQLYEY EKSRKPDRVV DSVYYENARI LLHEENIYRL ECSSSPSRLS IQLMDNIIEK
1201: PEAYAVSVEP TFASYLQKEF LSNSSGKKVV PQPILLQRNM RGYSGLDDLA VACKAMEGVK VINGLECKMS CSSYKISYVL DTEDYFHRKK KHKKSDDLSQ
1301: DKSWEQRKLD RLEKFHTFLS ASR
0101: VKELFKGHNN LIFGFNTFLP KGFEITLDDL EEDAPPKKTV EFEEAISFVN KIKKRFQRDE DVYKSFLEIL NMYRKDDKDI TEVYNEVSTL FEDHPDLLEG
0201: FTRFLPESLA PHSAAQLIRS QAHRYDDRGS GPPVVRRMFI DKDRRRRERA VASRGDRDHS VDRSDLNDDK AVVKMHRDPR KRGDKENRER RSRDLDHGEA
0301: AQDNLHHFPE KRKSSRKTEE FDAYSGHASH SDKSKLKGMY NQAFVFCEKV KEKLCSQDDY QTFLKFLNLF SSGIIHRKKL QNLVSDLLGK FPDLLDEFNQ
0401: FFERCESNDS FQHLAGVMSN KSLSSDEHLS RLMKAEEKER DDKRDLEAAM EKERSKEKYM EKSIQELDLS ECERCTPSYR LLPSDYPIPS VRHRQKSVAA
0501: VLNDHWVSVT SGSEDSFKHM RRNQYEESLF RCEDDRFELD MLLESVGSAA KSAEDLLNTI IEKKISFEGS FRVEDHFTAL NLRCIERLYG DHGLDVTDLI
0601: RKNPAAALPV ILTRLKQKQY EWTKCREDFN VVWKDVYAKN HYKSLDHRSF YFKQQDSKKL SAKALVADIK DLKEKSRKED DVHLSISAGY RQPIVPHYEY
0701: EYTDRTIHED LFKLVQFSCE EICSSKEQIS KVLRLWNNFL ELMLGVPPRD KGSDSVEDVA ETKHHVTRGE ANVSSDAVSL VSRQLKFAAN GDEYGSSGIS
0801: KHAGAGKDVD QASKDVATFS AVNPQKDRET GNGADKRSGG VDERVATSSA SFPSGVENKN DNIDAIQRTQ VGDIGRTIAI ANGVKPDTSK ASSNQDESGS
0901: PSKIEEEEGE LSPIGDSEDN NYVVYEDRGL KSTAKPEHSV EAVGENDDDA DDEDGDDASE GGEDASGTES VGDECSQDDN GVEEEGDHGK AESEGEAEGM
1001: ESHLIEDSGL LPLSERVLLS VKPLSKHVTA ADERKQDSRV FYGNDDFYVL FRLHRILYER ISSAKTYCNR RNTKDSTSSP DPYARFMSAL FSLLNGSAES
1101: SKFEDECRAI IGNQSYVLFT LEKLIYKLVK QLQAVVADDT DNKLLQLYEY EKSRKPDRVV DSVYYENARI LLHEENIYRL ECSSSPSRLS IQLMDNIIEK
1201: PEAYAVSVEP TFASYLQKEF LSNSSGKKVV PQPILLQRNM RGYSGLDDLA VACKAMEGVK VINGLECKMS CSSYKISYVL DTEDYFHRKK KHKKSDDLSQ
1301: DKSWEQRKLD RLEKFHTFLS ASR
0001: MKRIRDDIYA TGSQFKRPLG SSRGESYEQS PITGGGSIGE GGINTQKLTT DDALTYLKEV KEMFQDQRDK YDMFLEVMKD FKAQKTDTSG VISRVKELFK
0101: GHNNLIFGFN TFLPKGFEIT LDDVEAPSKK TVEFEEAISF VNKIKTRFQH NELVYKSFLE ILNMYRKDNK DITEVYNEVS TLFEDHSDLL EEFTRFLPDS
0201: LAPHTEAQLL RSQAQRYDDR GSGPPLVRRM FMEKDRRRER TVASRGDRDH SVDRSDLNDD KSMVKMHRDQ RKRVDKDNRE RRSRDLEDGE AEQDNLQHFS
0301: EKRKSSRRME GFEAYSGPAS HSEKNNLKSM YNQAFLFCEK VKERLCSQDD YQAFLKCLNM FSNGIIQRKD LQNLVSDVLG KFPDLMDEFN QFFERCESID
0401: GFQHLAGVMS KKSLGSEENL SRSVKGEEKD REHKRDVEAA KEKERSKDKY MGKSIQELDL SDCERCTPSY RLLPPDYPIP SVRHRQKSGA AVLNDHWVSV
0501: TSGSEDYSFK HMRRNQYEES LFRCEDDRFE LDMLLESVGS AAKSAEELLN IIIDKKISFE GSFRIEDHFT ALNLRCIERL YGDHGLDVTD LIRKNPAAAL
0601: PVILTRLKQK QDEWTKCREG FNVVWADVYA KNHYKSLDHR SFYFKQQDSK NLSAKALVSE VKDLKEKSQK EDDVVLSISA GYRQPIIPHL EYDYLDRAIH
0701: EDLFKLVQFS CEEICSTKEQ TGKVLKLWAN FLELMLDVAP RAKGSDSVED VVETQHQRAF TSGEANESSD AISLVSRQLK FATNGDVHAS SGVSKHGETG
0801: LLNRDSSGKE NLKDGDLANK DVATCAEKPQ KDQEIGNGAA KRSGDVDERV ATSSSSFPSG VENNNGKVGS RDSSGSRGIL SKPSEAIDKV DSIQHTQGVD
0901: IGRIIVLGNG LQSDTSKANS NYDESGGPSK IEKEEGELSP VGDSEDNFVV YEDRELKATA KTEHSVEAEG ENDEDADDED GDDASEAGED ASGTESIGDE
1001: CSQDDNGVEE EGEHDEIDGK AESEGEAEGM ESHLIEDKGL FPSSERVLLS VKPLSKHIAA AALVDEKKKD SRVFYGNDDF YVLFRLHRIL YERILSAKTY
1101: CSGSEMKLRN TKDTCSPDPY ARFMNALFSL LNGSAENSKF EDECRAIIGN QSYVLFTLEK LIYKLVKQLQ AVVADDMDNK LLQLYEYENS RRPGRVFDSV
1201: YYENARILLH EENIYRLECS SSPSRLSIQL MDNIIEKPDA YAVSMEPTFT SYLQNEFLSN SSGKKELQDI VLQRNMRGYN GLDDLAVACK AMEGVQVING
1301: LECKMSCSSY KISYVLDTED FFHRKKKQKK SNNLSLAKLS QNRIARFHKF LSASR
0101: GHNNLIFGFN TFLPKGFEIT LDDVEAPSKK TVEFEEAISF VNKIKTRFQH NELVYKSFLE ILNMYRKDNK DITEVYNEVS TLFEDHSDLL EEFTRFLPDS
0201: LAPHTEAQLL RSQAQRYDDR GSGPPLVRRM FMEKDRRRER TVASRGDRDH SVDRSDLNDD KSMVKMHRDQ RKRVDKDNRE RRSRDLEDGE AEQDNLQHFS
0301: EKRKSSRRME GFEAYSGPAS HSEKNNLKSM YNQAFLFCEK VKERLCSQDD YQAFLKCLNM FSNGIIQRKD LQNLVSDVLG KFPDLMDEFN QFFERCESID
0401: GFQHLAGVMS KKSLGSEENL SRSVKGEEKD REHKRDVEAA KEKERSKDKY MGKSIQELDL SDCERCTPSY RLLPPDYPIP SVRHRQKSGA AVLNDHWVSV
0501: TSGSEDYSFK HMRRNQYEES LFRCEDDRFE LDMLLESVGS AAKSAEELLN IIIDKKISFE GSFRIEDHFT ALNLRCIERL YGDHGLDVTD LIRKNPAAAL
0601: PVILTRLKQK QDEWTKCREG FNVVWADVYA KNHYKSLDHR SFYFKQQDSK NLSAKALVSE VKDLKEKSQK EDDVVLSISA GYRQPIIPHL EYDYLDRAIH
0701: EDLFKLVQFS CEEICSTKEQ TGKVLKLWAN FLELMLDVAP RAKGSDSVED VVETQHQRAF TSGEANESSD AISLVSRQLK FATNGDVHAS SGVSKHGETG
0801: LLNRDSSGKE NLKDGDLANK DVATCAEKPQ KDQEIGNGAA KRSGDVDERV ATSSSSFPSG VENNNGKVGS RDSSGSRGIL SKPSEAIDKV DSIQHTQGVD
0901: IGRIIVLGNG LQSDTSKANS NYDESGGPSK IEKEEGELSP VGDSEDNFVV YEDRELKATA KTEHSVEAEG ENDEDADDED GDDASEAGED ASGTESIGDE
1001: CSQDDNGVEE EGEHDEIDGK AESEGEAEGM ESHLIEDKGL FPSSERVLLS VKPLSKHIAA AALVDEKKKD SRVFYGNDDF YVLFRLHRIL YERILSAKTY
1101: CSGSEMKLRN TKDTCSPDPY ARFMNALFSL LNGSAENSKF EDECRAIIGN QSYVLFTLEK LIYKLVKQLQ AVVADDMDNK LLQLYEYENS RRPGRVFDSV
1201: YYENARILLH EENIYRLECS SSPSRLSIQL MDNIIEKPDA YAVSMEPTFT SYLQNEFLSN SSGKKELQDI VLQRNMRGYN GLDDLAVACK AMEGVQVING
1301: LECKMSCSSY KISYVLDTED FFHRKKKQKK SNNLSLAKLS QNRIARFHKF LSASR
Arabidopsis Description
SNL2Paired amphipathic helix protein Sin3-like 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFQ3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.