Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 3
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY16234 | Canola | cytosol, mitochondrion, nucleus | 13.21 | 38.89 |
| CDY14679 | Canola | cytosol, mitochondrion, nucleus | 13.21 | 38.89 |
| AT5G15025.1 | Thale cress | cytosol, nucleus, peroxisome | 16.6 | 36.07 |
| CDY40291 | Canola | cytoskeleton, cytosol, nucleus | 10.94 | 33.72 |
| CDY28457 | Canola | cytoskeleton, cytosol, nucleus | 10.57 | 33.33 |
| CDY48380 | Canola | cytosol | 16.6 | 27.85 |
| CDY23529 | Canola | cytosol | 16.23 | 27.22 |
| CDY48381 | Canola | cytosol | 14.34 | 24.52 |
| CDY23528 | Canola | cytosol | 14.34 | 24.52 |
| CDY42979 | Canola | cytosol, mitochondrion, nucleus | 12.45 | 22.76 |
| CDY67989 | Canola | nucleus | 12.08 | 20.51 |
| CDY03764 | Canola | cytosol | 12.45 | 20.37 |
| CDY42984 | Canola | cytosol, mitochondrion, nucleus | 12.08 | 20.0 |
| CDY42981 | Canola | mitochondrion | 12.08 | 20.0 |
| CDY66875 | Canola | mitochondrion | 12.08 | 20.0 |
| CDY06480 | Canola | cytosol | 16.6 | 18.64 |
| CDY42983 | Canola | nucleus | 10.94 | 17.9 |
| CDY08302 | Canola | cytosol | 16.98 | 17.58 |
| CDY55066 | Canola | cytosol | 25.66 | 17.09 |
| CDY31594 | Canola | nucleus | 25.28 | 16.88 |
| CDY08301 | Canola | cytosol | 17.36 | 16.55 |
| CDY03763 | Canola | cytosol | 12.45 | 11.58 |
| CDY16235 | Canola | mitochondrion | 12.83 | 10.12 |
| CDY14678 | Canola | cytosol | 12.08 | 9.25 |
| CDY42986 | Canola | cytosol | 7.17 | 9.09 |
| CDX78604 | Canola | nucleus | 35.09 | 6.89 |
| CDX70587 | Canola | nucleus | 35.09 | 6.86 |
| CDY37976 | Canola | nucleus | 25.28 | 6.78 |
| CDY45153 | Canola | nucleus | 24.53 | 6.71 |
| CDX93425 | Canola | nucleus | 25.66 | 6.69 |
| CDX85568 | Canola | nucleus | 33.58 | 6.66 |
| CDX91007 | Canola | nucleus | 33.21 | 6.65 |
| CDY24499 | Canola | nucleus | 27.17 | 6.49 |
| CDY30912 | Canola | nucleus | 25.66 | 6.48 |
| CDY33612 | Canola | nucleus | 27.17 | 6.24 |
| CDY28683 | Canola | mitochondrion, nucleus | 31.7 | 6.24 |
| CDY11625 | Canola | nucleus | 27.55 | 5.66 |
| CDY38781 | Canola | nucleus | 27.17 | 5.59 |
| CDX68358 | Canola | nucleus | 26.42 | 5.45 |
| CDY23527 | Canola | nucleus | 26.04 | 5.33 |
| CDY71516 | Canola | cytosol, mitochondrion, nucleus | 2.64 | 2.69 |
| CDY28682 | Canola | nucleus | 11.32 | 2.42 |
| CDY70453 | Canola | cytosol | 1.13 | 0.9 |
| CDY31595 | Canola | nucleus | 1.13 | 0.43 |
| CDY55065 | Canola | nucleus | 1.13 | 0.43 |
| CDY64434 | Canola | nucleus | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDY64433 | EnsemblPlantsGene:GSBRNA2T00041225001 | Gene3D:1.20.1160.11 | GO:A0A078JGE2 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR003822 | InterPro:PAH |
| InterPro:PAH_sf | PANTHER:PTHR12346 | PANTHER:PTHR12346:SF8 | PFAM:PF02671 | ProteinID:CDY64433 | ProteinID:CDY64433.1 |
| SEG:seg | SUPFAM:SSF47762 | UniParc:UPI0004EEB5DB | UniProt:A0A078JGE2 | MapMan:35.1 | : |
Description
BnaCnng43890DBnaCnng43890D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JGE2]
Coordinates
chrLK034463:+:11488..22585
Molecular Weight (calculated)
30374.8 Da
IEP (calculated)
5.011
GRAVY (calculated)
-0.659
Length
265 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLIYSQNLV KTQEQTKIYL LYHRMMIFTP LPLNLNVLWP PLVANPKNIW ESMMHKIDTF GVILKDFDAK RTDIHGVIAR VKVLFKGHNN LIFGFNTFLP
101: KGLEIALDDE QFEITLDDDE DEEEAVPPEK KFEQASLALD RQPDRDVASP GDHDHSVDQA EEQGNLHHFP KKSESFEAFS GPASNTAASH YEKNNLKDSL
201: SNEGHLSRPR KADEKETEAA KEKERSKDKY MGKSIQELDL SDCVRCTPSY LLLPWDRDIR SCCLE
101: KGLEIALDDE QFEITLDDDE DEEEAVPPEK KFEQASLALD RQPDRDVASP GDHDHSVDQA EEQGNLHHFP KKSESFEAFS GPASNTAASH YEKNNLKDSL
201: SNEGHLSRPR KADEKETEAA KEKERSKDKY MGKSIQELDL SDCVRCTPSY LLLPWDRDIR SCCLE
0001: MKRIRDDIYA TGSQFKRPLG SSRGESYEQS PITGGGSIGE GGINTQKLTT DDALTYLKEV KEMFQDQRDK YDMFLEVMKD FKAQKTDTSG VISRVKELFK
0101: GHNNLIFGFN TFLPKGFEIT LDDVEAPSKK TVEFEEAISF VNKIKTRFQH NELVYKSFLE ILNMYRKDNK DITEVYNEVS TLFEDHSDLL EEFTRFLPDS
0201: LAPHTEAQLL RSQAQRYDDR GSGPPLVRRM FMEKDRRRER TVASRGDRDH SVDRSDLNDD KSMVKMHRDQ RKRVDKDNRE RRSRDLEDGE AEQDNLQHFS
0301: EKRKSSRRME GFEAYSGPAS HSEKNNLKSM YNQAFLFCEK VKERLCSQDD YQAFLKCLNM FSNGIIQRKD LQNLVSDVLG KFPDLMDEFN QFFERCESID
0401: GFQHLAGVMS KKSLGSEENL SRSVKGEEKD REHKRDVEAA KEKERSKDKY MGKSIQELDL SDCERCTPSY RLLPPDYPIP SVRHRQKSGA AVLNDHWVSV
0501: TSGSEDYSFK HMRRNQYEES LFRCEDDRFE LDMLLESVGS AAKSAEELLN IIIDKKISFE GSFRIEDHFT ALNLRCIERL YGDHGLDVTD LIRKNPAAAL
0601: PVILTRLKQK QDEWTKCREG FNVVWADVYA KNHYKSLDHR SFYFKQQDSK NLSAKALVSE VKDLKEKSQK EDDVVLSISA GYRQPIIPHL EYDYLDRAIH
0701: EDLFKLVQFS CEEICSTKEQ TGKVLKLWAN FLELMLDVAP RAKGSDSVED VVETQHQRAF TSGEANESSD AISLVSRQLK FATNGDVHAS SGVSKHGETG
0801: LLNRDSSGKE NLKDGDLANK DVATCAEKPQ KDQEIGNGAA KRSGDVDERV ATSSSSFPSG VENNNGKVGS RDSSGSRGIL SKPSEAIDKV DSIQHTQGVD
0901: IGRIIVLGNG LQSDTSKANS NYDESGGPSK IEKEEGELSP VGDSEDNFVV YEDRELKATA KTEHSVEAEG ENDEDADDED GDDASEAGED ASGTESIGDE
1001: CSQDDNGVEE EGEHDEIDGK AESEGEAEGM ESHLIEDKGL FPSSERVLLS VKPLSKHIAA AALVDEKKKD SRVFYGNDDF YVLFRLHRIL YERILSAKTY
1101: CSGSEMKLRN TKDTCSPDPY ARFMNALFSL LNGSAENSKF EDECRAIIGN QSYVLFTLEK LIYKLVKQLQ AVVADDMDNK LLQLYEYENS RRPGRVFDSV
1201: YYENARILLH EENIYRLECS SSPSRLSIQL MDNIIEKPDA YAVSMEPTFT SYLQNEFLSN SSGKKELQDI VLQRNMRGYN GLDDLAVACK AMEGVQVING
1301: LECKMSCSSY KISYVLDTED FFHRKKKQKK SNNLSLAKLS QNRIARFHKF LSASR
0101: GHNNLIFGFN TFLPKGFEIT LDDVEAPSKK TVEFEEAISF VNKIKTRFQH NELVYKSFLE ILNMYRKDNK DITEVYNEVS TLFEDHSDLL EEFTRFLPDS
0201: LAPHTEAQLL RSQAQRYDDR GSGPPLVRRM FMEKDRRRER TVASRGDRDH SVDRSDLNDD KSMVKMHRDQ RKRVDKDNRE RRSRDLEDGE AEQDNLQHFS
0301: EKRKSSRRME GFEAYSGPAS HSEKNNLKSM YNQAFLFCEK VKERLCSQDD YQAFLKCLNM FSNGIIQRKD LQNLVSDVLG KFPDLMDEFN QFFERCESID
0401: GFQHLAGVMS KKSLGSEENL SRSVKGEEKD REHKRDVEAA KEKERSKDKY MGKSIQELDL SDCERCTPSY RLLPPDYPIP SVRHRQKSGA AVLNDHWVSV
0501: TSGSEDYSFK HMRRNQYEES LFRCEDDRFE LDMLLESVGS AAKSAEELLN IIIDKKISFE GSFRIEDHFT ALNLRCIERL YGDHGLDVTD LIRKNPAAAL
0601: PVILTRLKQK QDEWTKCREG FNVVWADVYA KNHYKSLDHR SFYFKQQDSK NLSAKALVSE VKDLKEKSQK EDDVVLSISA GYRQPIIPHL EYDYLDRAIH
0701: EDLFKLVQFS CEEICSTKEQ TGKVLKLWAN FLELMLDVAP RAKGSDSVED VVETQHQRAF TSGEANESSD AISLVSRQLK FATNGDVHAS SGVSKHGETG
0801: LLNRDSSGKE NLKDGDLANK DVATCAEKPQ KDQEIGNGAA KRSGDVDERV ATSSSSFPSG VENNNGKVGS RDSSGSRGIL SKPSEAIDKV DSIQHTQGVD
0901: IGRIIVLGNG LQSDTSKANS NYDESGGPSK IEKEEGELSP VGDSEDNFVV YEDRELKATA KTEHSVEAEG ENDEDADDED GDDASEAGED ASGTESIGDE
1001: CSQDDNGVEE EGEHDEIDGK AESEGEAEGM ESHLIEDKGL FPSSERVLLS VKPLSKHIAA AALVDEKKKD SRVFYGNDDF YVLFRLHRIL YERILSAKTY
1101: CSGSEMKLRN TKDTCSPDPY ARFMNALFSL LNGSAENSKF EDECRAIIGN QSYVLFTLEK LIYKLVKQLQ AVVADDMDNK LLQLYEYENS RRPGRVFDSV
1201: YYENARILLH EENIYRLECS SSPSRLSIQL MDNIIEKPDA YAVSMEPTFT SYLQNEFLSN SSGKKELQDI VLQRNMRGYN GLDDLAVACK AMEGVQVING
1301: LECKMSCSSY KISYVLDTED FFHRKKKQKK SNNLSLAKLS QNRIARFHKF LSASR
Arabidopsis Description
SNL2Paired amphipathic helix protein Sin3-like 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFQ3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.