Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G15040.2 | Thale cress | cytoskeleton, cytosol, nucleus | 30.33 | 42.53 |
| AT5G15030.1 | Thale cress | endoplasmic reticulum | 37.7 | 33.09 |
| AT1G27250.1 | Thale cress | nucleus | 31.15 | 27.74 |
| AT1G70030.1 | Thale cress | cytosol | 35.25 | 26.88 |
| AT1G24200.1 | Thale cress | cytosol | 35.25 | 21.94 |
| AT5G35610.1 | Thale cress | cytosol | 27.05 | 21.29 |
| AT1G27220.1 | Thale cress | nucleus | 30.33 | 20.11 |
| AT1G24210.1 | Thale cress | cytosol | 23.77 | 18.71 |
| CDY64433 | Canola | cytosol | 36.07 | 16.6 |
| AT1G27270.1 | Thale cress | cytosol | 28.69 | 14.52 |
| AT1G27240.1 | Thale cress | cytosol | 22.13 | 14.52 |
| AT1G27260.1 | Thale cress | cytosol | 26.23 | 14.41 |
| AT1G23810.1 | Thale cress | cytosol, nucleus, peroxisome | 27.87 | 14.11 |
| AT1G24250.1 | Thale cress | cytosol | 28.69 | 13.89 |
| AT1G27280.1 | Thale cress | cytosol | 25.41 | 13.78 |
| AT1G24230.1 | Thale cress | cytosol | 26.23 | 13.06 |
| AT1G24220.1 | Thale cress | nucleus | 34.43 | 5.65 |
| AT5G15020.1 | Thale cress | nucleus | 61.48 | 5.49 |
| AT1G59890.2 | Thale cress | nucleus | 51.64 | 5.4 |
| AT3G01320.1 | Thale cress | mitochondrion, nucleus | 60.66 | 5.39 |
| AT1G10450.3 | Thale cress | endoplasmic reticulum, plastid | 43.44 | 4.52 |
| AT1G70060.2 | Thale cress | nucleus | 45.9 | 4.22 |
| AT1G24190.3 | Thale cress | nucleus | 45.08 | 4.11 |
| AT1G10250.1 | Thale cress | cytosol | 0.0 | 0.0 |
| CDY64434 | Canola | nucleus | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.20.1160.11 | EntrezGene:28721159 | MapMan:35.1 | UniProt:A0A1P8BFD5 | ProteinID:ANM70301.1 | ArrayExpress:AT5G15025 |
| EnsemblPlantsGene:AT5G15025 | EnsemblPlants:AT5G15025.1 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| InterPro:IPR003822 | RefSeq:NP_001331923.1 | InterPro:PAH | InterPro:PAH_sf | PFAM:PF02671 | PFscan:PS51477 |
| PANTHER:PTHR12346 | PANTHER:PTHR12346:SF8 | SUPFAM:SSF47762 | UniParc:UPI000848642E | : | : |
Description
Paired amphipathic helix Sin3-like protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8BFD5]
Coordinates
chr5:-:4866954..4867558
Molecular Weight (calculated)
13836.3 Da
IEP (calculated)
5.916
GRAVY (calculated)
-0.755
Length
122 amino acids
Sequence
(BLAST)
(BLAST)
001: MKRIGDKEID GSGSQNQHPV GSPRNELQGQ SPKPGNGNTK DALTTDDALA YLKEIKDVFH DQKYKYHLFL EIMSDFKAQR TDTSVVIARV KDLLKGHNHL
101: ILVFNKFLPH GFEITLDDED ED
101: ILVFNKFLPH GFEITLDDED ED
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.