Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G23810.1 | Thale cress | cytosol, nucleus, peroxisome | 83.33 | 87.14 |
| AT1G27270.1 | Thale cress | cytosol | 64.29 | 67.22 |
| AT1G27260.1 | Thale cress | cytosol | 53.57 | 60.81 |
| AT1G24210.1 | Thale cress | cytosol | 27.78 | 45.16 |
| AT1G24230.1 | Thale cress | cytosol | 41.67 | 42.86 |
| AT1G27280.1 | Thale cress | cytosol | 33.33 | 37.33 |
| AT1G27240.1 | Thale cress | cytosol | 25.0 | 33.87 |
| AT1G70030.1 | Thale cress | cytosol | 19.84 | 31.25 |
| AT5G15040.2 | Thale cress | cytoskeleton, cytosol, nucleus | 10.32 | 29.89 |
| AT5G15025.1 | Thale cress | cytosol, nucleus, peroxisome | 13.89 | 28.69 |
| AT1G24200.1 | Thale cress | cytosol | 21.83 | 28.06 |
| AT5G15030.1 | Thale cress | endoplasmic reticulum | 14.68 | 26.62 |
| AT1G27250.1 | Thale cress | nucleus | 13.89 | 25.55 |
| AT5G35610.1 | Thale cress | cytosol | 13.89 | 22.58 |
| VIT_17s0000g07540.t01 | Wine grape | nucleus | 13.49 | 18.28 |
| AT1G27220.1 | Thale cress | nucleus | 13.1 | 17.93 |
| AT1G24220.1 | Thale cress | nucleus | 46.43 | 15.73 |
| AT1G59890.2 | Thale cress | nucleus | 23.41 | 5.06 |
| AT1G10450.3 | Thale cress | endoplasmic reticulum, plastid | 22.22 | 4.77 |
| AT1G70060.2 | Thale cress | nucleus | 25.0 | 4.75 |
| AT1G24190.3 | Thale cress | nucleus | 25.0 | 4.71 |
| AT5G15020.1 | Thale cress | nucleus | 25.4 | 4.68 |
| AT3G01320.1 | Thale cress | mitochondrion, nucleus | 25.0 | 4.59 |
| AT1G10250.1 | Thale cress | cytosol | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.20.1160.11 | MapMan:35.1 | EntrezGene:839039 | ProteinID:AAC00585.1 | ProteinID:AEE30500.1 | ArrayExpress:AT1G24250 |
| EnsemblPlantsGene:AT1G24250 | RefSeq:AT1G24250 | TAIR:AT1G24250 | RefSeq:AT1G24250-TAIR-G | EnsemblPlants:AT1G24250.1 | TAIR:AT1G24250.1 |
| GO:GO:0000118 | GO:GO:0000122 | GO:GO:0000785 | GO:GO:0001106 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004407 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016575 | GO:GO:0016787 | GO:GO:0019538 | InterPro:IPR003822 |
| RefSeq:NP_173835.1 | UniProt:O48692 | InterPro:PAH | InterPro:PAH_sf | PFAM:PF02671 | PFscan:PS51477 |
| PANTHER:PTHR12346 | PANTHER:PTHR12346:SF0 | SUPFAM:SSF47762 | UniParc:UPI00000A94BF | : | : |
Description
F3I6.18 protein [Source:UniProtKB/TrEMBL;Acc:O48692]
Coordinates
chr1:-:8588295..8589546
Molecular Weight (calculated)
27809.8 Da
IEP (calculated)
5.963
GRAVY (calculated)
-0.038
Length
252 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGGSLSPAS SLEDVKAYVN AVEVALQEME PARFGMFVRL FRGFTAPRIG MPTFSARMQD LLKDHPSLCL GLNVLLPPEY QLTIPPEASE EFHKVVGRSV
101: PVPPKVVGRS LPRPEPTIDD ATSYLIAVKE AFHDEPAKYG EMLKLLKDFK ARRVDAACVI ARVEELMKDH LNLLFGFCVF LSATTSFTTK LKARFQGDGS
201: QVVDSVLQIM RMYGEGNKSK HDAYQEVVAL VQGHDDLVME LSQILTDPPT GV
101: PVPPKVVGRS LPRPEPTIDD ATSYLIAVKE AFHDEPAKYG EMLKLLKDFK ARRVDAACVI ARVEELMKDH LNLLFGFCVF LSATTSFTTK LKARFQGDGS
201: QVVDSVLQIM RMYGEGNKSK HDAYQEVVAL VQGHDDLVME LSQILTDPPT GV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.