Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G70060.2 | Thale cress | nucleus | 68.76 | 69.38 |
| AT1G10250.1 | Thale cress | cytosol | 3.74 | 64.94 |
| AT1G24200.1 | Thale cress | cytosol | 8.74 | 59.69 |
| AT1G70030.1 | Thale cress | cytosol | 6.88 | 57.5 |
| VIT_01s0026g01010.t01 | Wine grape | nucleus | 61.58 | 56.79 |
| KRH69432 | Soybean | nucleus | 57.85 | 54.13 |
| KRH74716 | Soybean | nucleus | 52.84 | 53.76 |
| GSMUA_Achr1P20690_001 | Banana | nucleus | 53.36 | 53.24 |
| Os01t0109700-01 | Rice | nucleus | 50.07 | 50.53 |
| TraesCS1B01G002000.1 | Wheat | nucleus | 48.58 | 50.12 |
| GSMUA_Achr9P00800_001 | Banana | nucleus | 52.24 | 50.07 |
| TraesCS1A01G002700.1 | Wheat | nucleus | 49.4 | 49.62 |
| HORVU1Hr1G000290.3 | Barley | nucleus | 49.33 | 49.59 |
| GSMUA_Achr2P09580_001 | Banana | nucleus | 50.15 | 49.27 |
| TraesCS1D01G004900.4 | Wheat | nucleus | 49.4 | 49.15 |
| EES00449 | Sorghum | nucleus | 52.54 | 48.79 |
| Zm00001d040123_P007 | Maize | nucleus | 52.09 | 48.57 |
| Zm00001d008429_P019 | Maize | nucleus | 52.17 | 48.37 |
| TraesCSU01G039900.1 | Wheat | nucleus | 51.42 | 48.15 |
| TraesCS3B01G005900.1 | Wheat | nucleus | 51.35 | 47.91 |
| GSMUA_Achr11P... | Banana | nucleus | 49.33 | 47.9 |
| TraesCS3D01G007600.2 | Wheat | nucleus, plastid | 49.33 | 47.86 |
| KXG20992 | Sorghum | nucleus | 43.95 | 47.12 |
| AT1G59890.2 | Thale cress | nucleus | 40.73 | 46.7 |
| AT5G35610.1 | Thale cress | cytosol | 5.31 | 45.81 |
| AT5G15025.1 | Thale cress | cytosol, nucleus, peroxisome | 4.11 | 45.08 |
| AT5G15020.1 | Thale cress | nucleus | 45.96 | 44.99 |
| Zm00001d035776_P004 | Maize | nucleus | 42.08 | 44.65 |
| AT3G01320.1 | Thale cress | mitochondrion, nucleus | 45.67 | 44.53 |
| Os05t0100500-01 | Rice | plastid | 12.11 | 44.02 |
| HORVU3Hr1G000540.2 | Barley | plastid | 50.67 | 44.0 |
| AT1G10450.3 | Thale cress | endoplasmic reticulum, plastid | 38.12 | 43.48 |
| AT5G15040.2 | Thale cress | cytoskeleton, cytosol, nucleus | 2.77 | 42.53 |
| AT1G27250.1 | Thale cress | nucleus | 4.33 | 42.34 |
| AT1G27220.1 | Thale cress | nucleus | 5.75 | 41.85 |
| AT1G24210.1 | Thale cress | cytosol | 4.19 | 36.13 |
| AT1G27240.1 | Thale cress | cytosol | 4.33 | 31.18 |
| Zm00001d041450_P002 | Maize | nucleus | 18.01 | 30.66 |
| AT5G15030.1 | Thale cress | endoplasmic reticulum | 2.99 | 28.78 |
| AT1G27280.1 | Thale cress | cytosol | 4.41 | 26.22 |
| AT1G27260.1 | Thale cress | cytosol | 4.19 | 25.23 |
| AT1G24250.1 | Thale cress | cytosol | 4.71 | 25.0 |
| Zm00001d041453_P001 | Maize | nucleus | 21.0 | 24.33 |
| AT1G24230.1 | Thale cress | cytosol | 4.41 | 24.08 |
| AT1G23810.1 | Thale cress | cytosol, nucleus, peroxisome | 4.33 | 24.07 |
| AT1G27270.1 | Thale cress | cytosol | 4.19 | 23.24 |
| AT1G24220.1 | Thale cress | nucleus | 4.71 | 8.47 |
Protein Annotations
| Gene3D:1.20.1160.11 | MapMan:12.3.2.4.2 | EntrezGene:839032 | UniProt:A0A1P8AX02 | ProteinID:ANM61163.1 | ArrayExpress:AT1G24190 |
| EnsemblPlantsGene:AT1G24190 | RefSeq:AT1G24190 | TAIR:AT1G24190 | RefSeq:AT1G24190-TAIR-G | EnsemblPlants:AT1G24190.3 | Unigene:At.47999 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:HDAC_interact_dom | InterPro:IPR003822 |
| RefSeq:NP_001323398.1 | InterPro:PAH | InterPro:PAH_sf | PFAM:PF02671 | PFAM:PF08295 | PFAM:PF16879 |
| PFscan:PS51477 | PANTHER:PTHR12346 | PANTHER:PTHR12346:SF21 | Symbol:SIN3 | SMART:SM00761 | Symbol:SNL3 |
| SUPFAM:SSF47762 | InterPro:Sin3_C | UniParc:UPI000848AA86 | SEG:seg | : | : |
Description
SNL3SIN3-like 3 [Source:TAIR;Acc:AT1G24190]
Coordinates
chr1:-:8563554..8570536
Molecular Weight (calculated)
151795.0 Da
IEP (calculated)
5.499
GRAVY (calculated)
-0.759
Length
1338 amino acids
Sequence
(BLAST)
(BLAST)
0001: MVGGGSAQKL TTNDALAYLK AVKDKFQDQR GKYDEFLEVM KNFKSQRVDT AGVITRVKEL FKGHQELILG FNTFLPKGFE ITLQPEDGQP PLKKRVEFEE
0101: AISFVNKIKT RFQGDDRVYK SFLDILNMYR RDSKSITEVY QEVAILFRDH SDLLVEFTHF LPDTSATASI PSVKTSVRER GVSLADKKDR IITPHPDHDY
0201: GTEHIDQDRE RPIKKENKEH MRGTNKENEH RDARDFEPHS KKEQFLNKKQ KLHIRGDDPA EISNQSKLSG AVPSSSTYDE KGAMKSYSQD LAIVDRVKEK
0301: LNASEYQEFL RCLNLFSKEI ISRPELQSLV GNLIGVYPDL MDSFIEFLVQ CEKNEGLLSG ILTKKSLWSE GKYPQPSLDN DRDQEHKRDD GLRDRDHEKE
0401: RLEKAAANLK WAKPISELDL SNCEQCTPSY RLLPKNYPIS IASQKTEIGK LVLNDHWVSV TSGSEDYSFS HMRKNQYEES LFKCEDDRFE LDMLLESVNS
0501: TTKHVEELLT KINSNELKTN SPIRVEDHLT ALNLRCIERL YGDHGLDVMD VLKKNVSLAL PVILTRLKQK QEEWARCRSD FDKVWAEIYA KNYYKSLDHR
0601: SFYFKQQDSK KLSMKALLAE IKEITEKKRE DDSLLAFAAG NRLSISPDLE FDYPDHDLHE DLYQLIKYSC AEMCSTEQLD KVMKIWTTFV EQIFGVPSRP
0701: QGAEDQEDVV KSMNQNVKSG SSSAGESEGS PHNYASVADS RRSKSSRKAN EHSQLGQTSN SERDGAAGRT SDALCETAQH EKMLKNVVTS DEKPESKQAV
0801: SIERAHDSTA LAVDGLLDQS NGGSSIVHMT GHCNNNLKPV TCGTELELKM NDGNGPKLEV GNKKLLTNGI AVEITSDQEM AGTSKVEREE GELSPNGDFE
0901: EDNFAVYAKT DFETFSKAND STGNNISGDR SREGEPSCLE TRAENDAEGD ENAARSSEDS RNEYENGDVS GTESGGGEDP EDDLDNNNKG ESEGEAECMA
1001: DAHDAEENGS ALPVSARFLL HVKPLVKYVP SAIALHDKDK DSLKNSQVFY GNDSFYVLFR LHRILYERIL SAKVNSSSPE GKWRTSNTKN PTDSYARFMT
1101: ALYNLLDGTS DNAKFEDDCR AIIGTQSYIL FTLDKLIHKF IKHLQVVVAD EMDNKLLQLY FYEKSRRPET IFDAVYYDNT RVLLPDENIY RIECRLSTPA
1201: KLSIQLMCNG LDKPDVTSVS IDPTFAAYLH NDFLSIQPNA REDRRIYLNR NKRKVCREDE QLYSTDEVKI KNGLECKIAC GSSKVSYVLE TEDLLVRVKK
1301: RRKTLCHNQD SWRQNKNKSG NSPLLTSPDR AKLHSLSS
0101: AISFVNKIKT RFQGDDRVYK SFLDILNMYR RDSKSITEVY QEVAILFRDH SDLLVEFTHF LPDTSATASI PSVKTSVRER GVSLADKKDR IITPHPDHDY
0201: GTEHIDQDRE RPIKKENKEH MRGTNKENEH RDARDFEPHS KKEQFLNKKQ KLHIRGDDPA EISNQSKLSG AVPSSSTYDE KGAMKSYSQD LAIVDRVKEK
0301: LNASEYQEFL RCLNLFSKEI ISRPELQSLV GNLIGVYPDL MDSFIEFLVQ CEKNEGLLSG ILTKKSLWSE GKYPQPSLDN DRDQEHKRDD GLRDRDHEKE
0401: RLEKAAANLK WAKPISELDL SNCEQCTPSY RLLPKNYPIS IASQKTEIGK LVLNDHWVSV TSGSEDYSFS HMRKNQYEES LFKCEDDRFE LDMLLESVNS
0501: TTKHVEELLT KINSNELKTN SPIRVEDHLT ALNLRCIERL YGDHGLDVMD VLKKNVSLAL PVILTRLKQK QEEWARCRSD FDKVWAEIYA KNYYKSLDHR
0601: SFYFKQQDSK KLSMKALLAE IKEITEKKRE DDSLLAFAAG NRLSISPDLE FDYPDHDLHE DLYQLIKYSC AEMCSTEQLD KVMKIWTTFV EQIFGVPSRP
0701: QGAEDQEDVV KSMNQNVKSG SSSAGESEGS PHNYASVADS RRSKSSRKAN EHSQLGQTSN SERDGAAGRT SDALCETAQH EKMLKNVVTS DEKPESKQAV
0801: SIERAHDSTA LAVDGLLDQS NGGSSIVHMT GHCNNNLKPV TCGTELELKM NDGNGPKLEV GNKKLLTNGI AVEITSDQEM AGTSKVEREE GELSPNGDFE
0901: EDNFAVYAKT DFETFSKAND STGNNISGDR SREGEPSCLE TRAENDAEGD ENAARSSEDS RNEYENGDVS GTESGGGEDP EDDLDNNNKG ESEGEAECMA
1001: DAHDAEENGS ALPVSARFLL HVKPLVKYVP SAIALHDKDK DSLKNSQVFY GNDSFYVLFR LHRILYERIL SAKVNSSSPE GKWRTSNTKN PTDSYARFMT
1101: ALYNLLDGTS DNAKFEDDCR AIIGTQSYIL FTLDKLIHKF IKHLQVVVAD EMDNKLLQLY FYEKSRRPET IFDAVYYDNT RVLLPDENIY RIECRLSTPA
1201: KLSIQLMCNG LDKPDVTSVS IDPTFAAYLH NDFLSIQPNA REDRRIYLNR NKRKVCREDE QLYSTDEVKI KNGLECKIAC GSSKVSYVLE TEDLLVRVKK
1301: RRKTLCHNQD SWRQNKNKSG NSPLLTSPDR AKLHSLSS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.