Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- plastid 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr1P20690_001 | Banana | nucleus | 75.48 | 76.66 |
| GSMUA_Achr9P00800_001 | Banana | nucleus | 75.7 | 73.85 |
| GSMUA_Achr11P... | Banana | nucleus | 71.59 | 70.75 |
| EES00449 | Sorghum | nucleus | 63.88 | 60.37 |
| Os01t0109700-01 | Rice | nucleus | 58.52 | 60.11 |
| Zm00001d040123_P007 | Maize | nucleus | 63.14 | 59.93 |
| Zm00001d008429_P019 | Maize | nucleus | 63.22 | 59.67 |
| CDY23529 | Canola | cytosol | 6.9 | 59.49 |
| TraesCS1B01G002000.1 | Wheat | nucleus | 56.17 | 58.98 |
| CDY48380 | Canola | cytosol | 6.83 | 58.86 |
| HORVU1Hr1G000290.3 | Barley | nucleus | 57.49 | 58.83 |
| VIT_01s0026g01010.t01 | Wine grape | nucleus | 62.63 | 58.79 |
| Os05t0100500-01 | Rice | plastid | 15.86 | 58.7 |
| TraesCS1A01G002700.1 | Wheat | nucleus | 57.12 | 58.41 |
| TraesCS1D01G004900.4 | Wheat | nucleus | 57.12 | 57.84 |
| TraesCSU01G039900.1 | Wheat | nucleus | 59.62 | 56.82 |
| TraesCS3B01G005900.1 | Wheat | nucleus | 59.69 | 56.69 |
| KRH74716 | Soybean | nucleus | 54.63 | 56.58 |
| TraesCS3D01G007600.2 | Wheat | nucleus, plastid | 56.68 | 55.98 |
| KRH69432 | Soybean | nucleus | 58.08 | 55.31 |
| AT1G24200.1 | Thale cress | cytosol | 7.93 | 55.1 |
| AT1G70030.1 | Thale cress | cytosol | 6.46 | 55.0 |
| KXG20992 | Sorghum | nucleus | 49.27 | 53.77 |
| CDY48381 | Canola | cytosol | 6.09 | 53.55 |
| Bra003968.1-P | Field mustard | cytosol | 6.09 | 53.55 |
| CDY23528 | Canola | cytosol | 6.09 | 53.55 |
| Zm00001d035776_P004 | Maize | nucleus | 48.31 | 52.18 |
| HORVU3Hr1G000540.2 | Barley | plastid | 58.96 | 52.11 |
| CDY11625 | Canola | nucleus | 48.46 | 51.16 |
| CDX68358 | Canola | nucleus | 48.09 | 51.01 |
| CDY23527 | Canola | nucleus | 48.38 | 50.93 |
| CDY38781 | Canola | nucleus | 48.16 | 50.89 |
| Bra016241.1-P | Field mustard | nucleus | 48.09 | 50.81 |
| AT1G24190.3 | Thale cress | nucleus | 49.27 | 50.15 |
| Bra003967.1-P | Field mustard | nucleus | 48.02 | 49.73 |
| AT1G70060.2 | Thale cress | nucleus | 48.31 | 49.62 |
| GSMUA_AchrUn_... | Banana | cytosol | 12.63 | 42.16 |
| GSMUA_AchrUn_... | Banana | nucleus | 9.18 | 37.43 |
| Zm00001d041450_P002 | Maize | nucleus | 19.02 | 32.95 |
| Zm00001d041453_P001 | Maize | nucleus | 22.47 | 26.49 |
| GSMUA_Achr7P17160_001 | Banana | nucleus | 20.93 | 26.03 |
Protein Annotations
| Gene3D:1.20.1160.11 | MapMan:12.3.2.4.2 | ncoils:Coil | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | EnsemblPlantsGene:GSMUA_Achr2G09580_001 | EnsemblPlants:GSMUA_Achr2P09580_001 | EnsemblPlants:GSMUA_Achr2T09580_001 | InterPro:HDAC_interact_dom | InterPro:IPR003822 |
| UniProt:M0S6J9 | InterPro:PAH | InterPro:PAH_sf | PFAM:PF02671 | PFAM:PF08295 | PFAM:PF16879 |
| PFscan:PS51477 | PANTHER:PTHR12346 | PANTHER:PTHR12346:SF21 | SMART:SM00761 | SUPFAM:SSF47762 | InterPro:Sin3_C |
| UniParc:UPI000296C2D9 | SEG:seg | : | : | : | : |
Description
Putative Paired amphipathic helix protein Sin3-like 4 [Source:GMGC_GENE;Acc:GSMUA_Achr2G09580_001]
Coordinates
chr2:-:13063507..13074025
Molecular Weight (calculated)
155222.0 Da
IEP (calculated)
5.606
GRAVY (calculated)
-0.692
Length
1362 amino acids
Sequence
(BLAST)
(BLAST)
0001: MGSQLKWPNV PRADPWVPSS SSSAHRISWS WQTHMAPAAA AGSTSKLTTN DALAYLKAVK DIFHDKREKY DEFLEVMKDF KSQRIDTNGV IMRVKELFKG
0101: HRDLILGFNT FLPKGYEIKL PEEKKPVEFE EAIVFVNKIK SRFQNDEHVY KSFLDILNMY RRENKPIREV YEEVAALFQN HQDLLEEFTH FLPDASATYA
0201: PHLGYPDRSF AHRDERSPVM PLAREDKREK AYTSHANRDL SIDRLDMEHD SQRRHAEKEK DRKEDRDKRY HERDEKELEH DSGDLDNEQC RRKLPSRRVD
0301: DPTAEPMHQG GNIAMNSISA SQFDDKNALK SVYTREFNFC EKVKEKLHRD TYQEFLQCLH IYSKEIINRT ELKNLVSDIL GKYPDLMEGF NEFLAHCENI
0401: DGFLKGVINK SMYAELISPL LCCYLILTEF LCNEGHMAMP IKIEDRDRER DHEINDREKD LERERNFERE RGDKGAAHKA PLISNKEKYN LWKPISELDL
0501: SNCQRCSPSY CLLPKNYSIP PASQRTELGE SVLNDVWVSV TSGSEDYSFK HMRKNQYEES LFRCEDDRFE LDMLLESVNA TTKQVEELLE MMQDPVKSEN
0601: PIHIEDTLTS LNSRCIERLY GDHGLDVMDV LRKNSSLSLP VILTRLKQKQ EEWTRCRSDF NKVWAEIYAK NYHKSLDHRS FYFKQQDAKS MSTKALLAEI
0701: KEINDKMKKE DDIVLSIAAK NRQPIVPNME FEYIDLDIHE DLYRIIRYSC GEVCTSLDQV DKVIKFWTTF LEPLMGFQPQ NRGAEGMQDV KPNSHSGKSS
0801: IAGLVKSNGS PDADGTGATK QSNGGENIQS EQRRVQGSAP KADESSGITV QNVSAEHLSD NTSFVGRAEE SHSRTNLETV SGVGGASLQT SHCGTEMLVE
0901: PRAYLEVGQT GRSIISVNCG GTAECNKGDG PNEGSTCLNN LKVEREEGEL SPNGDTEEDN FAAFEDAAIS VAPKGRDNCA STQYQIKPVE VEVSCGEAAG
1001: ENDADDDDEG EESAQRSTEV SENASEAGED VSVSESGNER FLHTVKPLAR HVPAALHDKK DSSSRVFYGN DSFYVLLRLH QALYERILSA KTNSLAAEKK
1101: QRSFKDTSPP DLYAKFMSAL YNLLDGSADN MKFEDDCRAI IGTQSYVLFT LDKLIYKVVK QLQAIASDEM DNKILQLYSY EKSRLAGGSF DIVYHENARV
1201: LLHDESIYRF ECVSQSSHVT RLSIQLMEYG HEKPELTTIS IDPNFSAYLY NDLLSSVSDR KGAQGVFLGR NKRKYGGADE YSATCKAMNG FQVINGLECK
1301: ISCSSSKVSY VLDTEDFLFR VKKKRRCSCR GTIFGDQVQP SQVHDAKIHR FYRFLSSFLP RS
0101: HRDLILGFNT FLPKGYEIKL PEEKKPVEFE EAIVFVNKIK SRFQNDEHVY KSFLDILNMY RRENKPIREV YEEVAALFQN HQDLLEEFTH FLPDASATYA
0201: PHLGYPDRSF AHRDERSPVM PLAREDKREK AYTSHANRDL SIDRLDMEHD SQRRHAEKEK DRKEDRDKRY HERDEKELEH DSGDLDNEQC RRKLPSRRVD
0301: DPTAEPMHQG GNIAMNSISA SQFDDKNALK SVYTREFNFC EKVKEKLHRD TYQEFLQCLH IYSKEIINRT ELKNLVSDIL GKYPDLMEGF NEFLAHCENI
0401: DGFLKGVINK SMYAELISPL LCCYLILTEF LCNEGHMAMP IKIEDRDRER DHEINDREKD LERERNFERE RGDKGAAHKA PLISNKEKYN LWKPISELDL
0501: SNCQRCSPSY CLLPKNYSIP PASQRTELGE SVLNDVWVSV TSGSEDYSFK HMRKNQYEES LFRCEDDRFE LDMLLESVNA TTKQVEELLE MMQDPVKSEN
0601: PIHIEDTLTS LNSRCIERLY GDHGLDVMDV LRKNSSLSLP VILTRLKQKQ EEWTRCRSDF NKVWAEIYAK NYHKSLDHRS FYFKQQDAKS MSTKALLAEI
0701: KEINDKMKKE DDIVLSIAAK NRQPIVPNME FEYIDLDIHE DLYRIIRYSC GEVCTSLDQV DKVIKFWTTF LEPLMGFQPQ NRGAEGMQDV KPNSHSGKSS
0801: IAGLVKSNGS PDADGTGATK QSNGGENIQS EQRRVQGSAP KADESSGITV QNVSAEHLSD NTSFVGRAEE SHSRTNLETV SGVGGASLQT SHCGTEMLVE
0901: PRAYLEVGQT GRSIISVNCG GTAECNKGDG PNEGSTCLNN LKVEREEGEL SPNGDTEEDN FAAFEDAAIS VAPKGRDNCA STQYQIKPVE VEVSCGEAAG
1001: ENDADDDDEG EESAQRSTEV SENASEAGED VSVSESGNER FLHTVKPLAR HVPAALHDKK DSSSRVFYGN DSFYVLLRLH QALYERILSA KTNSLAAEKK
1101: QRSFKDTSPP DLYAKFMSAL YNLLDGSADN MKFEDDCRAI IGTQSYVLFT LDKLIYKVVK QLQAIASDEM DNKILQLYSY EKSRLAGGSF DIVYHENARV
1201: LLHDESIYRF ECVSQSSHVT RLSIQLMEYG HEKPELTTIS IDPNFSAYLY NDLLSSVSDR KGAQGVFLGR NKRKYGGADE YSATCKAMNG FQVINGLECK
1301: ISCSSSKVSY VLDTEDFLFR VKKKRRCSCR GTIFGDQVQP SQVHDAKIHR FYRFLSSFLP RS
0001: MVGGSSAQKL TTNDALAYLK AVKDKFQDKR DKYDEFLEVM KDFKAQRVDT TGVILRVKEL FKGNRELILG FNTFLPKGFE ITLRPEDDQP AAPKKPVEFE
0101: EAISFVNKIK TRFQGDDRVY KSFLDILNMY RKENKSITEV YHEVAILFRD HHDLLGEFTH FLPDTSATAS TNDSVKVPVR DRGIKSLPTM RQIDLDKKDR
0201: IITSHPNRAL KTENMDVDHE RSLLKDSKEE VRRIDKKNDF MDDRDRKDYR GLDHDSHKEH FFNSKKKLIR KDDDSAEMSD QAREGDKFSG AIPSSSTYDE
0301: KGHSQELAFV DRVKAKLDTA DNQEFLRCLN LYSKEIISQP ELQSLVSDLI GVYPDLMDAF KVFLAQCDKN DGLLSGIVSK KSLWSEGKCP QPTKSLDKDT
0401: DREREKIERY RERDREKERL EKVAASQKWA KPISELDLSN CEQCTPSYRR LPKNYPIPIA SQKMEIGSQV LNDHWVSVTS GSEDYSFKHM RKNQYEESLF
0501: KCEDDRFELD MLLESVISAT NRVEELLAKI NSNELKTDTP ICIEDHLTAL NLRCIERLYS DHGLDVLDLL KKNAYLALPV ILTRLKQKQE EWARCRTEFN
0601: KVWADIYTKN YHRSLDHRSF YFKQQDSKNL STKALLAEIK EISEKKRGED DALLALAAGN RRTISSNMSF DYPDPDLHED LYQLIKYSCG EMCSTEQLDK
0701: VMKVWTEFLE PIFGVPSRPQ GAEDREDAVK STNHDREDQE DAVSPQNGAS IANSMRSNGP RKVNESNQVR QASELDKDVT SSKTSDALLS CDNTQNDKMP
0801: KNLTTPDERA ETKQAVSIER AHNSNALPLD GLLPQRNGKI SSLSVAGLSN SNPKPALTSG TEELKPNYVN GPRVEIGDNP VIPNGTVAEW FAGEAKVERE
0901: EGELSPTGDF EEDNYAVHGE NDMEALSKSK ENDATADDAS APRSSDGSGN TSHNGDVSGT DSGDGEDCYR EDDIDHNKVE SEGEAEEGMS DGHDDTEGDM
1001: PVLSISVKNL LHVKPLAKYV PPALYDKDND DSRKNSQVFY GNDSFYVLFR LHQILYDRIL SAKINSSSPD RKWKTSNPTN PADSYARIMD ALYNLLDGTS
1101: DNSKFEDDCR AIIGTQSYVL FTLDKLIYKL IKHLQAVAAD EMDNKLQQLY AYEKSRKPEK FLDAVYYENA LVLLPDEDIY RIECEQSTPS KLSIQLLDYG
1201: HDKPDVTSIS MDPTFAAYLH NVFLSYQPNA KENPRIYLKR NKRKNGGDDE LCTTDEVKII NGLECKITCS SSKVSYVLDT EDVLHRAKRR KLLNQSGLPL
1301: AHDSVCSGSL IRQRRTQRYQ KLLTGQ
0101: EAISFVNKIK TRFQGDDRVY KSFLDILNMY RKENKSITEV YHEVAILFRD HHDLLGEFTH FLPDTSATAS TNDSVKVPVR DRGIKSLPTM RQIDLDKKDR
0201: IITSHPNRAL KTENMDVDHE RSLLKDSKEE VRRIDKKNDF MDDRDRKDYR GLDHDSHKEH FFNSKKKLIR KDDDSAEMSD QAREGDKFSG AIPSSSTYDE
0301: KGHSQELAFV DRVKAKLDTA DNQEFLRCLN LYSKEIISQP ELQSLVSDLI GVYPDLMDAF KVFLAQCDKN DGLLSGIVSK KSLWSEGKCP QPTKSLDKDT
0401: DREREKIERY RERDREKERL EKVAASQKWA KPISELDLSN CEQCTPSYRR LPKNYPIPIA SQKMEIGSQV LNDHWVSVTS GSEDYSFKHM RKNQYEESLF
0501: KCEDDRFELD MLLESVISAT NRVEELLAKI NSNELKTDTP ICIEDHLTAL NLRCIERLYS DHGLDVLDLL KKNAYLALPV ILTRLKQKQE EWARCRTEFN
0601: KVWADIYTKN YHRSLDHRSF YFKQQDSKNL STKALLAEIK EISEKKRGED DALLALAAGN RRTISSNMSF DYPDPDLHED LYQLIKYSCG EMCSTEQLDK
0701: VMKVWTEFLE PIFGVPSRPQ GAEDREDAVK STNHDREDQE DAVSPQNGAS IANSMRSNGP RKVNESNQVR QASELDKDVT SSKTSDALLS CDNTQNDKMP
0801: KNLTTPDERA ETKQAVSIER AHNSNALPLD GLLPQRNGKI SSLSVAGLSN SNPKPALTSG TEELKPNYVN GPRVEIGDNP VIPNGTVAEW FAGEAKVERE
0901: EGELSPTGDF EEDNYAVHGE NDMEALSKSK ENDATADDAS APRSSDGSGN TSHNGDVSGT DSGDGEDCYR EDDIDHNKVE SEGEAEEGMS DGHDDTEGDM
1001: PVLSISVKNL LHVKPLAKYV PPALYDKDND DSRKNSQVFY GNDSFYVLFR LHQILYDRIL SAKINSSSPD RKWKTSNPTN PADSYARIMD ALYNLLDGTS
1101: DNSKFEDDCR AIIGTQSYVL FTLDKLIYKL IKHLQAVAAD EMDNKLQQLY AYEKSRKPEK FLDAVYYENA LVLLPDEDIY RIECEQSTPS KLSIQLLDYG
1201: HDKPDVTSIS MDPTFAAYLH NVFLSYQPNA KENPRIYLKR NKRKNGGDDE LCTTDEVKII NGLECKITCS SSKVSYVLDT EDVLHRAKRR KLLNQSGLPL
1301: AHDSVCSGSL IRQRRTQRYQ KLLTGQ
Arabidopsis Description
SNL4Paired amphipathic helix protein Sin3-like 4 [Source:UniProtKB/Swiss-Prot;Acc:O04539]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.