Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G002000.1 | Wheat | nucleus | 95.35 | 97.92 |
| TraesCS1D01G004900.4 | Wheat | nucleus | 97.97 | 97.03 |
| HORVU1Hr1G000290.3 | Barley | nucleus | 94.37 | 94.44 |
| Os05t0100500-01 | Rice | plastid | 18.69 | 67.66 |
| KXG20992 | Sorghum | nucleus | 59.16 | 63.14 |
| Zm00001d035776_P004 | Maize | nucleus | 58.56 | 61.86 |
| GSMUA_Achr1P20690_001 | Banana | nucleus | 61.94 | 61.52 |
| GSMUA_Achr9P00800_001 | Banana | nucleus | 62.76 | 59.89 |
| GSMUA_Achr11P... | Banana | nucleus | 59.98 | 57.98 |
| GSMUA_Achr2P09580_001 | Banana | nucleus | 58.41 | 57.12 |
| VIT_01s0026g01010.t01 | Wine grape | nucleus | 62.09 | 57.0 |
| CDY23529 | Canola | cytosol | 6.53 | 55.06 |
| CDY48380 | Canola | cytosol | 6.46 | 54.43 |
| KRH69432 | Soybean | nucleus | 57.73 | 53.78 |
| KRH74716 | Soybean | nucleus | 52.7 | 53.38 |
| AT1G70030.1 | Thale cress | cytosol | 6.31 | 52.5 |
| Bra003968.1-P | Field mustard | cytosol | 6.08 | 52.26 |
| CDY23528 | Canola | cytosol | 6.08 | 52.26 |
| CDY48381 | Canola | cytosol | 6.08 | 52.26 |
| AT1G24200.1 | Thale cress | cytosol | 7.66 | 52.04 |
| CDY38781 | Canola | nucleus | 49.85 | 51.51 |
| Bra016241.1-P | Field mustard | nucleus | 49.77 | 51.44 |
| CDY11625 | Canola | nucleus | 49.62 | 51.24 |
| CDY23527 | Canola | nucleus | 49.47 | 50.93 |
| CDX68358 | Canola | nucleus | 49.02 | 50.86 |
| AT1G70060.2 | Thale cress | nucleus | 50.45 | 50.68 |
| Bra003967.1-P | Field mustard | nucleus | 48.95 | 49.58 |
| AT1G24190.3 | Thale cress | nucleus | 49.62 | 49.4 |
| TraesCS3A01G002800.1 | Wheat | cytoskeleton, cytosol, nucleus | 5.33 | 37.37 |
| Zm00001d041450_P002 | Maize | nucleus | 20.8 | 35.24 |
| Zm00001d041453_P001 | Maize | nucleus | 24.1 | 27.79 |
| TraesCS1A01G429100.1 | Wheat | nucleus | 15.24 | 25.06 |
| TraesCS1A01G429200.1 | Wheat | nucleus | 15.92 | 25.03 |
Protein Annotations
| Gene3D:1.20.1160.11 | MapMan:12.3.2.4.2 | ncoils:Coil | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:HDAC_interact_dom | InterPro:IPR003822 | InterPro:PAH |
| InterPro:PAH_sf | PFAM:PF02671 | PFAM:PF08295 | PFAM:PF16879 | PFscan:PS51477 | PANTHER:PTHR12346 |
| PANTHER:PTHR12346:SF21 | SMART:SM00761 | SUPFAM:SSF47762 | InterPro:Sin3_C | EnsemblPlantsGene:TraesCS1A01G002700 | EnsemblPlants:TraesCS1A01G002700.1 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr1A:-:1336829..1348324
Molecular Weight (calculated)
149826.0 Da
IEP (calculated)
5.796
GRAVY (calculated)
-0.739
Length
1332 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSPPPASPAL SAQKLTTNDA LAYLKAVKDK FHDNRAKYDE FLEVMRDFKS ARIDTAGVII RVKTLFSGYP ELILGFNAFL PKGFAIKLQD IDGTGDKKQP
0101: VDFMEAINFV NKIKARFQAQ DHVYKAFLAI LNMYRMHNKS IQDVYQEVAT LFHDHPDLLE EFKHFLPDTS NAPQVLAAPK AVSAKQEAPA VPSASARNVQ
0201: SIKRERPQPS TAERDSSVDR PDLEHDPDRK RVDKEKDRKI DRDRKDHDKD AEFESKDLDG GLRKRKAFSK KLEGDTHQGA ASISASSYND NDALKSTYTQ
0301: EFLFCEKVKE KLEPEAYQEF LKCLHIYSQE IITRSELKNL VHDILQRYPE LMTGFSEFLE HCENIDGFLD GVINKRQTSR TVKALEKERD KGRAGEDRER
0401: DAEKLSEKER EKLDKVSALN SKEATTHKAA AFSSTKEKYL CKPISELDLS NCQRCTPSYR LLPKNYPVPA SSCRTDLGIS VLNDHWVSVT SGSEDYSFKH
0501: MRKNQYEESL FRCEDDRFEL DMLLESVNVA IKRVEELIEK MQENSIKPDS PIRIDEHLTS LNLRCIERLY GDHGLDVMDV LRKNASVALP VILTRLKQKQ
0601: EEWSRCRSDF NKVWAEIYAK NYHKSLDHRS FYFKQQDSKN LSTRALLSEI KEINEKKRKE DDVLLAIAAG NRRPIVPNMS FEYVDSEIHE DVYQIIKYSC
0701: GEVCSSPDQV DKVMRTWTTF VEPILGVQPR TPAVEDVGVV KSKSRTPTTG LASAGESNNV ISNGAVTVKQ ANGDESILKE QAQSSRGLLA NGVSEDAQNG
0801: FHDADRTVRR GEGPSNTSLH QTEQNQRRTN MELTSGTNSS RGNFSGSESV VEAMGGNETI PSIGRGEAGR PGSVPQKNSK VEREEGELSP NGDFEEENFG
0901: PLGNAAVDGA LKPKEVSAGR TRAAEFAGEN DADADDEGDE SAQRSTESEN ASEAGEDASG SESGDGEECS REDNEDEEDA DHDDPDAKVE SEGEAEGNTG
1001: AHDADGGMSL SFSERLHNTV RPLAKHVPTA LQDHGGKFSR IFYGNDSFYV LFRLHQILYE RLLSAKTNSS TAEKKWRTSK DTSSPHQYSK FMGALYNLID
1101: GSSDNTKFED DCRSIIGTQS YVLFTLDKLI YKVVKQLQAI AADEMDNKLL QLYIYEKSRS PGRFFDLVYH ENARVLLHDE SIYRFERRSN PTRLSVQLME
1201: YGHEKPEVTA VSIDPNFSSY LHDEYLSSIS DSKVSEDVFL ERNKRKRGSS NGPQASLAVM DGFKVANGLE CKITCKSSKV SYVLDTEDFL FRMRNRRRIS
1301: SGATAAPGKA DFVKAADVVK AQRFHKFLLS RS
0101: VDFMEAINFV NKIKARFQAQ DHVYKAFLAI LNMYRMHNKS IQDVYQEVAT LFHDHPDLLE EFKHFLPDTS NAPQVLAAPK AVSAKQEAPA VPSASARNVQ
0201: SIKRERPQPS TAERDSSVDR PDLEHDPDRK RVDKEKDRKI DRDRKDHDKD AEFESKDLDG GLRKRKAFSK KLEGDTHQGA ASISASSYND NDALKSTYTQ
0301: EFLFCEKVKE KLEPEAYQEF LKCLHIYSQE IITRSELKNL VHDILQRYPE LMTGFSEFLE HCENIDGFLD GVINKRQTSR TVKALEKERD KGRAGEDRER
0401: DAEKLSEKER EKLDKVSALN SKEATTHKAA AFSSTKEKYL CKPISELDLS NCQRCTPSYR LLPKNYPVPA SSCRTDLGIS VLNDHWVSVT SGSEDYSFKH
0501: MRKNQYEESL FRCEDDRFEL DMLLESVNVA IKRVEELIEK MQENSIKPDS PIRIDEHLTS LNLRCIERLY GDHGLDVMDV LRKNASVALP VILTRLKQKQ
0601: EEWSRCRSDF NKVWAEIYAK NYHKSLDHRS FYFKQQDSKN LSTRALLSEI KEINEKKRKE DDVLLAIAAG NRRPIVPNMS FEYVDSEIHE DVYQIIKYSC
0701: GEVCSSPDQV DKVMRTWTTF VEPILGVQPR TPAVEDVGVV KSKSRTPTTG LASAGESNNV ISNGAVTVKQ ANGDESILKE QAQSSRGLLA NGVSEDAQNG
0801: FHDADRTVRR GEGPSNTSLH QTEQNQRRTN MELTSGTNSS RGNFSGSESV VEAMGGNETI PSIGRGEAGR PGSVPQKNSK VEREEGELSP NGDFEEENFG
0901: PLGNAAVDGA LKPKEVSAGR TRAAEFAGEN DADADDEGDE SAQRSTESEN ASEAGEDASG SESGDGEECS REDNEDEEDA DHDDPDAKVE SEGEAEGNTG
1001: AHDADGGMSL SFSERLHNTV RPLAKHVPTA LQDHGGKFSR IFYGNDSFYV LFRLHQILYE RLLSAKTNSS TAEKKWRTSK DTSSPHQYSK FMGALYNLID
1101: GSSDNTKFED DCRSIIGTQS YVLFTLDKLI YKVVKQLQAI AADEMDNKLL QLYIYEKSRS PGRFFDLVYH ENARVLLHDE SIYRFERRSN PTRLSVQLME
1201: YGHEKPEVTA VSIDPNFSSY LHDEYLSSIS DSKVSEDVFL ERNKRKRGSS NGPQASLAVM DGFKVANGLE CKITCKSSKV SYVLDTEDFL FRMRNRRRIS
1301: SGATAAPGKA DFVKAADVVK AQRFHKFLLS RS
0001: MVGGSSAQKL TTNDALAYLK AVKDKFQDKR DKYDEFLEVM KDFKAQRVDT TGVILRVKEL FKGNRELILG FNTFLPKGFE ITLRPEDDQP AAPKKPVEFE
0101: EAISFVNKIK TRFQGDDRVY KSFLDILNMY RKENKSITEV YHEVAILFRD HHDLLGEFTH FLPDTSATAS TNDSVKVPVR DRGIKSLPTM RQIDLDKKDR
0201: IITSHPNRAL KTENMDVDHE RSLLKDSKEE VRRIDKKNDF MDDRDRKDYR GLDHDSHKEH FFNSKKKLIR KDDDSAEMSD QAREGDKFSG AIPSSSTYDE
0301: KGHSQELAFV DRVKAKLDTA DNQEFLRCLN LYSKEIISQP ELQSLVSDLI GVYPDLMDAF KVFLAQCDKN DGLLSGIVSK KSLWSEGKCP QPTKSLDKDT
0401: DREREKIERY RERDREKERL EKVAASQKWA KPISELDLSN CEQCTPSYRR LPKNYPIPIA SQKMEIGSQV LNDHWVSVTS GSEDYSFKHM RKNQYEESLF
0501: KCEDDRFELD MLLESVISAT NRVEELLAKI NSNELKTDTP ICIEDHLTAL NLRCIERLYS DHGLDVLDLL KKNAYLALPV ILTRLKQKQE EWARCRTEFN
0601: KVWADIYTKN YHRSLDHRSF YFKQQDSKNL STKALLAEIK EISEKKRGED DALLALAAGN RRTISSNMSF DYPDPDLHED LYQLIKYSCG EMCSTEQLDK
0701: VMKVWTEFLE PIFGVPSRPQ GAEDREDAVK STNHDREDQE DAVSPQNGAS IANSMRSNGP RKVNESNQVR QASELDKDVT SSKTSDALLS CDNTQNDKMP
0801: KNLTTPDERA ETKQAVSIER AHNSNALPLD GLLPQRNGKI SSLSVAGLSN SNPKPALTSG TEELKPNYVN GPRVEIGDNP VIPNGTVAEW FAGEAKVERE
0901: EGELSPTGDF EEDNYAVHGE NDMEALSKSK ENDATADDAS APRSSDGSGN TSHNGDVSGT DSGDGEDCYR EDDIDHNKVE SEGEAEEGMS DGHDDTEGDM
1001: PVLSISVKNL LHVKPLAKYV PPALYDKDND DSRKNSQVFY GNDSFYVLFR LHQILYDRIL SAKINSSSPD RKWKTSNPTN PADSYARIMD ALYNLLDGTS
1101: DNSKFEDDCR AIIGTQSYVL FTLDKLIYKL IKHLQAVAAD EMDNKLQQLY AYEKSRKPEK FLDAVYYENA LVLLPDEDIY RIECEQSTPS KLSIQLLDYG
1201: HDKPDVTSIS MDPTFAAYLH NVFLSYQPNA KENPRIYLKR NKRKNGGDDE LCTTDEVKII NGLECKITCS SSKVSYVLDT EDVLHRAKRR KLLNQSGLPL
1301: AHDSVCSGSL IRQRRTQRYQ KLLTGQ
0101: EAISFVNKIK TRFQGDDRVY KSFLDILNMY RKENKSITEV YHEVAILFRD HHDLLGEFTH FLPDTSATAS TNDSVKVPVR DRGIKSLPTM RQIDLDKKDR
0201: IITSHPNRAL KTENMDVDHE RSLLKDSKEE VRRIDKKNDF MDDRDRKDYR GLDHDSHKEH FFNSKKKLIR KDDDSAEMSD QAREGDKFSG AIPSSSTYDE
0301: KGHSQELAFV DRVKAKLDTA DNQEFLRCLN LYSKEIISQP ELQSLVSDLI GVYPDLMDAF KVFLAQCDKN DGLLSGIVSK KSLWSEGKCP QPTKSLDKDT
0401: DREREKIERY RERDREKERL EKVAASQKWA KPISELDLSN CEQCTPSYRR LPKNYPIPIA SQKMEIGSQV LNDHWVSVTS GSEDYSFKHM RKNQYEESLF
0501: KCEDDRFELD MLLESVISAT NRVEELLAKI NSNELKTDTP ICIEDHLTAL NLRCIERLYS DHGLDVLDLL KKNAYLALPV ILTRLKQKQE EWARCRTEFN
0601: KVWADIYTKN YHRSLDHRSF YFKQQDSKNL STKALLAEIK EISEKKRGED DALLALAAGN RRTISSNMSF DYPDPDLHED LYQLIKYSCG EMCSTEQLDK
0701: VMKVWTEFLE PIFGVPSRPQ GAEDREDAVK STNHDREDQE DAVSPQNGAS IANSMRSNGP RKVNESNQVR QASELDKDVT SSKTSDALLS CDNTQNDKMP
0801: KNLTTPDERA ETKQAVSIER AHNSNALPLD GLLPQRNGKI SSLSVAGLSN SNPKPALTSG TEELKPNYVN GPRVEIGDNP VIPNGTVAEW FAGEAKVERE
0901: EGELSPTGDF EEDNYAVHGE NDMEALSKSK ENDATADDAS APRSSDGSGN TSHNGDVSGT DSGDGEDCYR EDDIDHNKVE SEGEAEEGMS DGHDDTEGDM
1001: PVLSISVKNL LHVKPLAKYV PPALYDKDND DSRKNSQVFY GNDSFYVLFR LHQILYDRIL SAKINSSSPD RKWKTSNPTN PADSYARIMD ALYNLLDGTS
1101: DNSKFEDDCR AIIGTQSYVL FTLDKLIYKL IKHLQAVAAD EMDNKLQQLY AYEKSRKPEK FLDAVYYENA LVLLPDEDIY RIECEQSTPS KLSIQLLDYG
1201: HDKPDVTSIS MDPTFAAYLH NVFLSYQPNA KENPRIYLKR NKRKNGGDDE LCTTDEVKII NGLECKITCS SSKVSYVLDT EDVLHRAKRR KLLNQSGLPL
1301: AHDSVCSGSL IRQRRTQRYQ KLLTGQ
Arabidopsis Description
SNL4Paired amphipathic helix protein Sin3-like 4 [Source:UniProtKB/Swiss-Prot;Acc:O04539]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.