Factsheet for Bra003968.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY48381	Canola	cytosol	100.0	100.0
CDY23528	Canola	cytosol	100.0	100.0
AT1G24200.1	Thale cress	cytosol	47.74	37.76
Bra012419.1-P	Field mustard	cytosol	20.65	37.21
Bra024645.1-P	Field mustard	cytosol, mitochondrion, nucleus	20.65	35.56
Bra007893.1-P	Field mustard	cytosol	14.19	27.5
Bra037065.1-P	Field mustard	nucleus	36.77	23.65
Bra037066.1-P	Field mustard	nucleus	40.65	22.66
Os05t0100500-01	Rice	plastid	52.9	22.28
Bra024644.1-P	Field mustard	mitochondrion	29.68	13.69
Bra007894.1-P	Field mustard	nucleus	34.19	12.59
Bra027831.1-P	Field mustard	nucleus	49.68	10.32
Zm00001d041450_P002	Maize	nucleus	40.0	7.89
Bra016241.1-P	Field mustard	nucleus	61.29	7.37
Bra019933.1-P	Field mustard	nucleus	47.74	7.28
Bra003967.1-P	Field mustard	nucleus	61.29	7.22
Bra035418.1-P	Field mustard	nucleus	49.68	6.96
Bra017891.1-P	Field mustard	nucleus	43.87	6.94
KRH74716	Soybean	nucleus	57.42	6.77
GSMUA_Achr1P20690_001	Banana	nucleus	55.48	6.41
VIT_01s0026g01010.t01	Wine grape	nucleus	59.35	6.34
KRH69432	Soybean	nucleus	58.06	6.29
TraesCS1B01G002000.1	Wheat	nucleus	52.26	6.25
Bra006276.1-P	Field mustard	nucleus	54.19	6.24
HORVU1Hr1G000290.3	Barley	nucleus	52.9	6.16
GSMUA_Achr9P00800_001	Banana	nucleus	55.48	6.16
Bra023501.1-P	Field mustard	nucleus	52.9	6.14
GSMUA_Achr2P09580_001	Banana	nucleus	53.55	6.09
TraesCS1A01G002700.1	Wheat	nucleus	52.26	6.08
GSMUA_Achr11P...	Banana	nucleus	53.55	6.02
TraesCS1D01G004900.4	Wheat	nucleus	52.26	6.02
TraesCS3D01G007600.2	Wheat	nucleus, plastid	52.9	5.95
Zm00001d008429_P019	Maize	nucleus	53.55	5.75
TraesCSU01G039900.1	Wheat	nucleus	52.9	5.74
TraesCS3B01G005900.1	Wheat	nucleus	52.9	5.72
Bra040510.1-P	Field mustard	mitochondrion, nucleus	49.03	5.65
Zm00001d040123_P007	Maize	nucleus	52.26	5.64
EES00449	Sorghum	nucleus	52.26	5.62
Zm00001d041453_P001	Maize	nucleus	40.0	5.37
HORVU3Hr1G000540.2	Barley	plastid	52.9	5.32
KXG20992	Sorghum	nucleus	40.65	5.05
Zm00001d035776_P004	Maize	nucleus	38.71	4.76
Os01t0109700-01	Rice	nucleus	39.35	4.6
Bra008727.1-P	Field mustard	cytosol	4.52	1.77

Protein Annotations

Gene3D:1.20.1160.11	MapMan:35.1	EnsemblPlantsGene:Bra003968	EnsemblPlants:Bra003968.1	EnsemblPlants:Bra003968.1-P	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR003822	UniProt:M4CID5	InterPro:PAH
InterPro:PAH_sf	PFAM:PF02671	PFscan:PS51477	PANTHER:PTHR12346	PANTHER:PTHR12346:SF8	SUPFAM:SSF47762
UniParc:UPI0002541907	:	:	:	:	:

Description

AT1G70060 (E=3e-047) SNL4 | SNL4 (SIN3-LIKE 4)

Coordinates

chrA07:-:16019978..16020726

Molecular Weight (calculated)

18556.2 Da

IEP (calculated)

5.108

GRAVY (calculated)

-0.430

Length

155 amino acids

Sequence
(BLAST)

001: MVTPKLTYAL EYVKTVKDKF KDTRQKFDEF LEVIVDFRAE KIDTYGVILK VKELFKDQQE LLLGFDSFLP EGWKITLGVD QTPPKEPVTF EEAVIFVKNV
101: KARFQDNDRP YRSFLDSLNM YRNNNRSLTE VLEELAFLFR DHYDLFVEFT RFTRQ

Best Arabidopsis Sequence Match ( AT1G24190.1 )
(BLAST)

0001: MVGGGSAQKL TTNDALAYLK AVKDKFQDQR GKYDEFLEVM KNFKSQRVDT AGVITRVKEL FKGHQELILG FNTFLPKGFE ITLQPEDGQP PLKKRVEFEE
0101: AISFVNKIKT RFQGDDRVYK SFLDILNMYR RDSKSITEVY QEVAILFRDH SDLLVEFTHF LPDTSATASI PSVKTSVRER GVSLADKKDR IITPHPDHDY
0201: GTEHIDQDRE RPIKKENKEH MRGTNKENEH RDARDFEPHS KKEQFLNKKQ KLHIRGDDPA EISNQSKLSG AVPSSSTYDE KGAMKSYSQD LAIVDRVKEK
0301: LNASEYQEFL RCLNLFSKEI ISRPELQSLV GNLIGVYPDL MDSFIEFLVQ CEKNEGLLSG ILTKSKSTYL LQGEGKYPQP SLDNDRDQEH KRDDGLRDRD
0401: HEKERLEKAA ANLKWAKPIS ELDLSNCEQC TPSYRLLPKN YPISIASQKT EIGKLVLNDH WVSVTSGSED YSFSHMRKNQ YEESLFKCED DRFELDMLLE
0501: SVNSTTKHVE ELLTKINSNE LKTNSPIRVE DHLTALNLRC IERLYGDHGL DVMDVLKKNV SLALPVILTR LKQKQEEWAR CRSDFDKVWA EIYAKNYYKS
0601: LDHRSFYFKQ QDSKKLSMKA LLAEIKEITE KKREDDSLLA FAAGNRLSIS PDLEFDYPDH DLHEDLYQLI KYSCAEMCST EQLDKVMKIW TTFVEQIFGV
0701: PSRPQGAEDQ EDVVKSMNQN VKSGSSSAGE SEGSPHNYAS VADSRRSKSS RKANEHSQLG QTSNSERDGA AGRTSDALCE TAQHEKMLKN VVTSDEKPES
0801: KQAVSIERAH DSTALAVDGL LDQSNGGSSI VHMTGHCNNN LKPVTCGTEL ELKMNDGNGP KLEVGNKKLL TNGIAVEITS DQEMAGTSKV EREEGELSPN
0901: GDFEEDNFAV YAKTDFETFS KANDSTGNNI SGDRSREGEP SCLETRAEND AEGDENAARS SEDSRNEYEN GDVSGTESGG GEDPEDDLDN NNKGESEGEA
1001: ECMADAHDAE ENGSALPVSA RFLLHVKPLV KYVPSAIALH DKDKDSLKNS QVFYGNDSFY VLFRLHRILY ERILSAKVNS SSPEGKWRTS NTKNPTDSYA
1101: RFMTALYNLL DGTSDNAKFE DDCRAIIGTQ SYILFTLDKL IHKFIKHLQV VVADEMDNKL LQLYFYEKSR RPETIFDAVY YDNTRVLLPD ENIYRIECRL
1201: STPAKLSIQL MCNGLDKPDV TSVSIDPTFA AYLHNDFLSI QPNAREDRRI YLNRNKRKVC REDEQLYSTD EVKIKNGLEC KIACGSSKVS YVLETEDLLV
1301: RVKKRRKTLC HNQDSWVRQM RLQYYKNNFL

Arabidopsis Description

SNL3SIN3-like 3 [Source:TAIR;Acc:AT1G24190]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.