Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr9P00800_001 | Banana | nucleus | 84.34 | 81.02 |
| GSMUA_Achr2P09580_001 | Banana | nucleus | 76.66 | 75.48 |
| GSMUA_Achr11P... | Banana | nucleus | 77.4 | 75.33 |
| EES00449 | Sorghum | nucleus | 69.65 | 64.82 |
| Os01t0109700-01 | Rice | nucleus | 63.68 | 64.4 |
| Zm00001d008429_P019 | Maize | nucleus | 68.9 | 64.03 |
| Zm00001d040123_P007 | Maize | nucleus | 68.46 | 63.97 |
| VIT_01s0026g01010.t01 | Wine grape | nucleus | 68.46 | 63.27 |
| HORVU1Hr1G000290.3 | Barley | nucleus | 61.89 | 62.36 |
| TraesCS1B01G002000.1 | Wheat | nucleus | 60.25 | 62.3 |
| CDY23529 | Canola | cytosol | 7.31 | 62.03 |
| Os05t0100500-01 | Rice | plastid | 17.0 | 61.96 |
| TraesCS1A01G002700.1 | Wheat | nucleus | 61.52 | 61.94 |
| TraesCS1D01G004900.4 | Wheat | nucleus | 61.82 | 61.64 |
| CDY48380 | Canola | cytosol | 7.16 | 60.76 |
| TraesCSU01G039900.1 | Wheat | nucleus | 64.58 | 60.6 |
| TraesCS3B01G005900.1 | Wheat | nucleus | 64.5 | 60.32 |
| KRH74716 | Soybean | nucleus | 58.39 | 59.54 |
| TraesCS3D01G007600.2 | Wheat | nucleus, plastid | 61.22 | 59.54 |
| KRH69432 | Soybean | nucleus | 63.31 | 59.37 |
| AT1G70030.1 | Thale cress | cytosol | 6.94 | 58.12 |
| KXG20992 | Sorghum | nucleus | 52.35 | 56.25 |
| HORVU3Hr1G000540.2 | Barley | plastid | 64.13 | 55.81 |
| AT1G24200.1 | Thale cress | cytosol | 8.13 | 55.61 |
| Bra003968.1-P | Field mustard | cytosol | 6.41 | 55.48 |
| CDY48381 | Canola | cytosol | 6.41 | 55.48 |
| CDY23528 | Canola | cytosol | 6.41 | 55.48 |
| CDY11625 | Canola | nucleus | 52.95 | 55.04 |
| Zm00001d035776_P004 | Maize | nucleus | 51.68 | 54.96 |
| CDY38781 | Canola | nucleus | 52.57 | 54.69 |
| Bra016241.1-P | Field mustard | nucleus | 52.5 | 54.62 |
| CDY23527 | Canola | nucleus | 52.5 | 54.4 |
| CDX68358 | Canola | nucleus | 51.9 | 54.21 |
| AT1G70060.2 | Thale cress | nucleus | 53.17 | 53.77 |
| AT1G24190.3 | Thale cress | nucleus | 53.24 | 53.36 |
| Bra003967.1-P | Field mustard | nucleus | 51.9 | 52.93 |
| GSMUA_AchrUn_... | Banana | cytosol | 13.27 | 43.63 |
| GSMUA_AchrUn_... | Banana | nucleus | 8.87 | 35.63 |
| Zm00001d041450_P002 | Maize | nucleus | 19.39 | 33.08 |
| Zm00001d041453_P001 | Maize | nucleus | 22.82 | 26.49 |
| GSMUA_Achr7P17160_001 | Banana | nucleus | 21.48 | 26.3 |
Protein Annotations
| Gene3D:1.20.1160.11 | MapMan:12.3.2.4.2 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| EnsemblPlantsGene:GSMUA_Achr1G20690_001 | EnsemblPlants:GSMUA_Achr1P20690_001 | EnsemblPlants:GSMUA_Achr1T20690_001 | InterPro:HDAC_interact_dom | InterPro:IPR003822 | UniProt:M0S1M7 |
| InterPro:PAH | InterPro:PAH_sf | PFAM:PF02671 | PFAM:PF08295 | PFAM:PF16879 | PFscan:PS51477 |
| PANTHER:PTHR12346 | PANTHER:PTHR12346:SF21 | SMART:SM00761 | SUPFAM:SSF47762 | InterPro:Sin3_C | UniParc:UPI000296ED29 |
| SEG:seg | : | : | : | : | : |
Description
Paired amphipathic helix protein Sin3-like 4 [Source:GMGC_GENE;Acc:GSMUA_Achr1G20690_001]
Coordinates
chr1:+:15575892..15588415
Molecular Weight (calculated)
152422.0 Da
IEP (calculated)
5.160
GRAVY (calculated)
-0.759
Length
1341 amino acids
Sequence
(BLAST)
(BLAST)
0001: MKGAREEALM GSQLKRPNVP RADPSGQTHM APAPATGSTP KLTTNDALAY LKAVKDIFQD KREKYDEFLE VMKDFKSQRI DTNGVIMRVK ELFKGHRDLI
0101: LGFNTFLPKG YEIKLPEEKK PVEFEEAINF VNKIKNRFQN DDHVYKSFLD ILNMYRRENK SIHEVYQEVA ALFQNHQDLL EEFTHFLPDA SATFAPHYPY
0201: SGRPFVRRDD RSSIMPTARH VHGDKRDRAY TSHADRDFSV DRPDTEHDRQ RRLAEKEKDR KEDRDKRDRE WDEKDMDHDS GDLGNTHPRR KHSSKRVDDS
0301: VAEPMQQGGD GADGIYSISA SSFDDKNALK SVYTREFNFC EKVKEKLHPD TYQEFLKCLH IYSKEIINRT ELKNLVSDIL GKYPDLMDGF NEFLAHCENI
0401: DGFLEGVFNK KSLFYEGHIA RPVKLEDGDR EREREMDKRE KDRERERYNL WKPISELDLS NCQRCTPSYR LLPKNYPIPP ASHRTELGVS VLNDVWVSVT
0501: SGSEDYSFKH MRKNQYEESL FRCEDDRFEL DMLLESVNIT TKRVEELIEM MQDPVKSENP TRMEDHLNSL NLRCIERLYG DHGLDVMDVL RKNASLALPV
0601: ILTRLKQKQE EWSRCRSDFN KVWAEIYAKN YHKSLDHRSF YFKQQDTKSL STKALLAEIK EINDKMKKED DILVTIAARN RQPIVPNMAF EYVDVSIHED
0701: LYQIIKYSCG EVCTSSDQLD KVMKIWTTFL EPLLGVPSRN QLAEDAEDVK PKSRVVKANL SVVGESNGSP GADYAGASKQ SNGDENIPSE QTALVQGSAP
0801: MADEVSGITG TNVSAERMPD TTSVAGRAEQ CHNRTNREIV TGASGASRAA NFGNETLVEP RATNENLPAS EGVQTGRPIL AANGGNTTEG NKGHRPSEGS
0901: ASLNNLKVER EEGELSPNGD FEEDNFVTFE DVAVNVAGEN EADADDEGEE SAQRSTEVSG NASEAGEDVS GSESGDGEEC SHEDHEEEED DAGNDDQDAK
1001: AESEGEAEGE ITSLPFSERI LHTVKPLARH VPTALHDKED KSSRIFYGND SFYVLFRLHQ TLYERILSAK TNSLAAEKKW RSSKDTSPPD LYAKFMSALY
1101: HLLDGSADNT KFEDDCRAII GTQSYVLFTL DKLIYKVAKQ LQAIASDEMD NKLLQLYLYE KSRRSGRSSD LVYHENARVL LHDENIYRFE CCSQSSSMTC
1201: LSIQLMEYGH EKPEVTAVTI DPSFSAYLCS DFLSSVPDKI GAEGVFLGRN KRKYVGDDEN TSTCKTMVGF QVINGLECKI SCSSSKVSYV LDTEDFLFRV
1301: RKKRRYSCGG SIFHDQAQPS QVHDTKVQLF HQFLISFLSR S
0101: LGFNTFLPKG YEIKLPEEKK PVEFEEAINF VNKIKNRFQN DDHVYKSFLD ILNMYRRENK SIHEVYQEVA ALFQNHQDLL EEFTHFLPDA SATFAPHYPY
0201: SGRPFVRRDD RSSIMPTARH VHGDKRDRAY TSHADRDFSV DRPDTEHDRQ RRLAEKEKDR KEDRDKRDRE WDEKDMDHDS GDLGNTHPRR KHSSKRVDDS
0301: VAEPMQQGGD GADGIYSISA SSFDDKNALK SVYTREFNFC EKVKEKLHPD TYQEFLKCLH IYSKEIINRT ELKNLVSDIL GKYPDLMDGF NEFLAHCENI
0401: DGFLEGVFNK KSLFYEGHIA RPVKLEDGDR EREREMDKRE KDRERERYNL WKPISELDLS NCQRCTPSYR LLPKNYPIPP ASHRTELGVS VLNDVWVSVT
0501: SGSEDYSFKH MRKNQYEESL FRCEDDRFEL DMLLESVNIT TKRVEELIEM MQDPVKSENP TRMEDHLNSL NLRCIERLYG DHGLDVMDVL RKNASLALPV
0601: ILTRLKQKQE EWSRCRSDFN KVWAEIYAKN YHKSLDHRSF YFKQQDTKSL STKALLAEIK EINDKMKKED DILVTIAARN RQPIVPNMAF EYVDVSIHED
0701: LYQIIKYSCG EVCTSSDQLD KVMKIWTTFL EPLLGVPSRN QLAEDAEDVK PKSRVVKANL SVVGESNGSP GADYAGASKQ SNGDENIPSE QTALVQGSAP
0801: MADEVSGITG TNVSAERMPD TTSVAGRAEQ CHNRTNREIV TGASGASRAA NFGNETLVEP RATNENLPAS EGVQTGRPIL AANGGNTTEG NKGHRPSEGS
0901: ASLNNLKVER EEGELSPNGD FEEDNFVTFE DVAVNVAGEN EADADDEGEE SAQRSTEVSG NASEAGEDVS GSESGDGEEC SHEDHEEEED DAGNDDQDAK
1001: AESEGEAEGE ITSLPFSERI LHTVKPLARH VPTALHDKED KSSRIFYGND SFYVLFRLHQ TLYERILSAK TNSLAAEKKW RSSKDTSPPD LYAKFMSALY
1101: HLLDGSADNT KFEDDCRAII GTQSYVLFTL DKLIYKVAKQ LQAIASDEMD NKLLQLYLYE KSRRSGRSSD LVYHENARVL LHDENIYRFE CCSQSSSMTC
1201: LSIQLMEYGH EKPEVTAVTI DPSFSAYLCS DFLSSVPDKI GAEGVFLGRN KRKYVGDDEN TSTCKTMVGF QVINGLECKI SCSSSKVSYV LDTEDFLFRV
1301: RKKRRYSCGG SIFHDQAQPS QVHDTKVQLF HQFLISFLSR S
0001: MVGGSSAQKL TTNDALAYLK AVKDKFQDKR DKYDEFLEVM KDFKAQRVDT TGVILRVKEL FKGNRELILG FNTFLPKGFE ITLRPEDDQP AAPKKPVEFE
0101: EAISFVNKIK TRFQGDDRVY KSFLDILNMY RKENKSITEV YHEVAILFRD HHDLLGEFTH FLPDTSATAS TNDSVKVPVR DRGIKSLPTM RQIDLDKKDR
0201: IITSHPNRAL KTENMDVDHE RSLLKDSKEE VRRIDKKNDF MDDRDRKDYR GLDHDSHKEH FFNSKKKLIR KDDDSAEMSD QAREGDKFSG AIPSSSTYDE
0301: KGHSQELAFV DRVKAKLDTA DNQEFLRCLN LYSKEIISQP ELQSLVSDLI GVYPDLMDAF KVFLAQCDKN DGLLSGIVSK KSLWSEGKCP QPTKSLDKDT
0401: DREREKIERY RERDREKERL EKVAASQKWA KPISELDLSN CEQCTPSYRR LPKNYPIPIA SQKMEIGSQV LNDHWVSVTS GSEDYSFKHM RKNQYEESLF
0501: KCEDDRFELD MLLESVISAT NRVEELLAKI NSNELKTDTP ICIEDHLTAL NLRCIERLYS DHGLDVLDLL KKNAYLALPV ILTRLKQKQE EWARCRTEFN
0601: KVWADIYTKN YHRSLDHRSF YFKQQDSKNL STKALLAEIK EISEKKRGED DALLALAAGN RRTISSNMSF DYPDPDLHED LYQLIKYSCG EMCSTEQLDK
0701: VMKVWTEFLE PIFGVPSRPQ GAEDREDAVK STNHDREDQE DAVSPQNGAS IANSMRSNGP RKVNESNQVR QASELDKDVT SSKTSDALLS CDNTQNDKMP
0801: KNLTTPDERA ETKQAVSIER AHNSNALPLD GLLPQRNGKI SSLSVAGLSN SNPKPALTSG TEELKPNYVN GPRVEIGDNP VIPNGTVAEW FAGEAKVERE
0901: EGELSPTGDF EEDNYAVHGE NDMEALSKSK ENDATADDAS APRSSDGSGN TSHNGDVSGT DSGDGEDCYR EDDIDHNKVE SEGEAEEGMS DGHDDTEGDM
1001: PVLSISVKNL LHVKPLAKYV PPALYDKDND DSRKNSQVFY GNDSFYVLFR LHQILYDRIL SAKINSSSPD RKWKTSNPTN PADSYARIMD ALYNLLDGTS
1101: DNSKFEDDCR AIIGTQSYVL FTLDKLIYKL IKHLQAVAAD EMDNKLQQLY AYEKSRKPEK FLDAVYYENA LVLLPDEDIY RIECEQSTPS KLSIQLLDYG
1201: HDKPDVTSIS MDPTFAAYLH NVFLSYQPNA KENPRIYLKR NKRKNGGDDE LCTTDEVKII NGLECKITCS SSKVSYVLDT EDVLHRAKRR KLLNQSGLPL
1301: AHDSVCSGSL IRQRRTQRYQ KLLTGQ
0101: EAISFVNKIK TRFQGDDRVY KSFLDILNMY RKENKSITEV YHEVAILFRD HHDLLGEFTH FLPDTSATAS TNDSVKVPVR DRGIKSLPTM RQIDLDKKDR
0201: IITSHPNRAL KTENMDVDHE RSLLKDSKEE VRRIDKKNDF MDDRDRKDYR GLDHDSHKEH FFNSKKKLIR KDDDSAEMSD QAREGDKFSG AIPSSSTYDE
0301: KGHSQELAFV DRVKAKLDTA DNQEFLRCLN LYSKEIISQP ELQSLVSDLI GVYPDLMDAF KVFLAQCDKN DGLLSGIVSK KSLWSEGKCP QPTKSLDKDT
0401: DREREKIERY RERDREKERL EKVAASQKWA KPISELDLSN CEQCTPSYRR LPKNYPIPIA SQKMEIGSQV LNDHWVSVTS GSEDYSFKHM RKNQYEESLF
0501: KCEDDRFELD MLLESVISAT NRVEELLAKI NSNELKTDTP ICIEDHLTAL NLRCIERLYS DHGLDVLDLL KKNAYLALPV ILTRLKQKQE EWARCRTEFN
0601: KVWADIYTKN YHRSLDHRSF YFKQQDSKNL STKALLAEIK EISEKKRGED DALLALAAGN RRTISSNMSF DYPDPDLHED LYQLIKYSCG EMCSTEQLDK
0701: VMKVWTEFLE PIFGVPSRPQ GAEDREDAVK STNHDREDQE DAVSPQNGAS IANSMRSNGP RKVNESNQVR QASELDKDVT SSKTSDALLS CDNTQNDKMP
0801: KNLTTPDERA ETKQAVSIER AHNSNALPLD GLLPQRNGKI SSLSVAGLSN SNPKPALTSG TEELKPNYVN GPRVEIGDNP VIPNGTVAEW FAGEAKVERE
0901: EGELSPTGDF EEDNYAVHGE NDMEALSKSK ENDATADDAS APRSSDGSGN TSHNGDVSGT DSGDGEDCYR EDDIDHNKVE SEGEAEEGMS DGHDDTEGDM
1001: PVLSISVKNL LHVKPLAKYV PPALYDKDND DSRKNSQVFY GNDSFYVLFR LHQILYDRIL SAKINSSSPD RKWKTSNPTN PADSYARIMD ALYNLLDGTS
1101: DNSKFEDDCR AIIGTQSYVL FTLDKLIYKL IKHLQAVAAD EMDNKLQQLY AYEKSRKPEK FLDAVYYENA LVLLPDEDIY RIECEQSTPS KLSIQLLDYG
1201: HDKPDVTSIS MDPTFAAYLH NVFLSYQPNA KENPRIYLKR NKRKNGGDDE LCTTDEVKII NGLECKITCS SSKVSYVLDT EDVLHRAKRR KLLNQSGLPL
1301: AHDSVCSGSL IRQRRTQRYQ KLLTGQ
Arabidopsis Description
SNL4Paired amphipathic helix protein Sin3-like 4 [Source:UniProtKB/Swiss-Prot;Acc:O04539]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.