Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCSU01G039900.1 | Wheat | nucleus | 87.74 | 94.61 |
| TraesCS3B01G005900.1 | Wheat | nucleus | 86.96 | 93.44 |
| TraesCS3D01G007600.2 | Wheat | nucleus, plastid | 82.87 | 92.6 |
| Os01t0109700-01 | Rice | nucleus | 68.33 | 79.41 |
| EES00449 | Sorghum | nucleus | 73.2 | 78.28 |
| Zm00001d040123_P007 | Maize | nucleus | 71.9 | 77.21 |
| Zm00001d008429_P019 | Maize | nucleus | 71.84 | 76.72 |
| HORVU1Hr1G000290.3 | Barley | nucleus | 59.7 | 69.12 |
| GSMUA_Achr1P20690_001 | Banana | nucleus | 55.81 | 64.13 |
| GSMUA_Achr9P00800_001 | Banana | nucleus | 56.13 | 61.96 |
| GSMUA_Achr11P... | Banana | nucleus | 53.41 | 59.72 |
| GSMUA_Achr2P09580_001 | Banana | nucleus | 52.11 | 58.96 |
| VIT_01s0026g01010.t01 | Wine grape | nucleus | 55.48 | 58.92 |
| CDY23529 | Canola | cytosol | 6.04 | 58.86 |
| CDY48380 | Canola | cytosol | 5.91 | 57.59 |
| KRH69432 | Soybean | nucleus | 51.01 | 54.97 |
| AT1G70030.1 | Thale cress | cytosol | 5.65 | 54.38 |
| KRH74716 | Soybean | nucleus | 46.4 | 54.37 |
| AT1G24200.1 | Thale cress | cytosol | 6.88 | 54.08 |
| CDY23528 | Canola | cytosol | 5.32 | 52.9 |
| Bra003968.1-P | Field mustard | cytosol | 5.32 | 52.9 |
| CDY48381 | Canola | cytosol | 5.32 | 52.9 |
| CDY11625 | Canola | nucleus | 43.22 | 51.63 |
| CDY38781 | Canola | nucleus | 43.15 | 51.59 |
| Bra016241.1-P | Field mustard | nucleus | 43.09 | 51.51 |
| CDX68358 | Canola | nucleus | 42.83 | 51.4 |
| AT1G70060.2 | Thale cress | nucleus | 44.19 | 51.36 |
| CDY23527 | Canola | nucleus | 42.89 | 51.08 |
| AT1G24190.3 | Thale cress | nucleus | 44.0 | 50.67 |
| Bra003967.1-P | Field mustard | nucleus | 42.76 | 50.11 |
| HORVU1Hr1G093550.1 | Barley | nucleus | 12.98 | 26.85 |
| HORVU1Hr1G093530.1 | Barley | nucleus | 13.56 | 26.32 |
| HORVU1Hr1G093540.1 | Barley | nucleus | 13.56 | 26.32 |
| HORVU1Hr1G093490.1 | Barley | nucleus | 12.72 | 25.29 |
Protein Annotations
| Gene3D:1.20.1160.11 | MapMan:12.3.2.4.2 | UniProt:A0A287JVQ6 | ncoils:Coil | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | InterPro:HDAC_interact_dom | EnsemblPlantsGene:HORVU3Hr1G000540 | EnsemblPlants:HORVU3Hr1G000540.2 | InterPro:IPR003822 |
| InterPro:PAH | InterPro:PAH_sf | PFAM:PF02671 | PFAM:PF08295 | PFAM:PF16879 | PFscan:PS51477 |
| PANTHER:PTHR12346 | PANTHER:PTHR12346:SF21 | SMART:SM00761 | SUPFAM:SSF47762 | InterPro:Sin3_C | UniParc:UPI000B489027 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr3H:+:1465533..1473959
Molecular Weight (calculated)
171790.0 Da
IEP (calculated)
6.503
GRAVY (calculated)
-0.804
Length
1541 amino acids
Sequence
(BLAST)
(BLAST)
0001: APSTRPLSSI GRPPGRFTPF SSSSLRRPSS RSSSLPSHHH RSPSELPLAP ALPFAVAGVP STKGRSLDRA RSRDRADPGF KPARGGRIGA GGGVQAGLPR
0101: EEPAPVRCGG GDEDGDEEEE GRAVHGGLMK RSRDDTLAAA GSQPKRTAVA RSDPSPPQPM PPAGSGSALV PAPPPQAVAA PPAQPSAAAG QKLTTNDALV
0201: YLKAVKDKFQ DNRAKYEEFL EVMRDFKSER IDTNGVIIRV KTLFNGYPEL ILGFNTFLPK GFAIRLQDEK KPVDFVEAIN FVNKIKSRFQ RDEHVYKSFL
0301: DILNMYRKDN KSIQDVYHEV AVLFSDHKDL LEEFQHFLPD TSVSPQAGTA PRGGLVKREA LMPPASRGHI EKPRAFPSHT DRDASVDRPD VDHDRQRQRE
0401: KNKERKAERE RRDYDRDEKD GEQDSKELDV GQHKRKPFPS ANLAAGAEAH QGGHPEIHGI ASASASSYDN KDALKSAYTQ EFHFCEKVKE KLEYDAYQEF
0501: LKCLHIYSQE IITRSELKNL VSDILQHYPD LMVGFNEFLE HCENIDGFLA GVFSKKQPGR LIKTEDKERD KDHEREERNR DRDKEREKER ERLHPKEGPS
0601: QKPSVVKEKY LCKPISELDL SNCQRCTPSY RLLPKNYPMP PAGNKTDLGA SVLNDHWVSV TSGSEDYSFK HMRKNQYEES LFRCEDDRFE LDMLLESVNA
0701: ATKRVEELIE KMQDNSVKPE SPIRIDEHLT PLNLRCIERL YGDHGLDVMD VLRRNASVAL PVILSRLKQK QDEWSRCRSD FNKVWADIYA KNYHKSLDHR
0801: SFYFKQQDSK NLSIKSLLTE VKEINEKKRK EDDVLIAIAA GNRRPIVPNM SFEYVDANIH DDLYKIVKYS CGEVCGSDQL DKVMRIWTTF LEPILRVPPR
0901: SHGTVDADII KPKNGITKSG IANVGESNTS PDVVAAQQGH GDESMQHEQA PSAVARLARS VKGVAADSQN GSRDADRTAR RDDEASNAAL NEVSAVSTQN
1001: MPTERSAGQH SHMKGNSETT PGVNASKSSH AGVSIAGGAR AGHEALPSTE GGEIGKSGSS LNGGATGEGN KGRLFNEPAA SHNTSKVERE EGELSPNGDF
1101: EEDNFVPFED GASKTKEGST SRAFKVRPGQ VEPHAEAAGE NDADDEESTQ RSTEDSENAS EAGEDASGSE SGDGEQCSRE DHDEEEDMDH DQDAKAESEG
1201: EAEGTTENHD VEGGISLPGI SLPSSERFLY SAKPLAKHVP SSLHGRENRS SHIFYGNDSF YILFRLHQML YERLLSAKTN SSSAEKKWRI SKDTNPPDLY
1301: ARFIKALYNL LDGTSDNTKF EDDCRAIIGT QSYVLFTLDK LIYKVVKQLQ AIATDEMDSK LLQLYIYEKS RSPGRFFDLV YHENARVLLH DESMYRFECC
1401: SSPTRLSIQL MEYGHEKPEV TAVSIEPNFA SYLFSEYLSN SSGTMLPEGV FLGRNKRKHS NDGEPSDSLK AMDGIKVANG LECKISCKTS KVSYVLDTED
1501: FLFRLRKRRR LSPGGNVADK SPTSKKYAAK VQRFHLFLSK P
0101: EEPAPVRCGG GDEDGDEEEE GRAVHGGLMK RSRDDTLAAA GSQPKRTAVA RSDPSPPQPM PPAGSGSALV PAPPPQAVAA PPAQPSAAAG QKLTTNDALV
0201: YLKAVKDKFQ DNRAKYEEFL EVMRDFKSER IDTNGVIIRV KTLFNGYPEL ILGFNTFLPK GFAIRLQDEK KPVDFVEAIN FVNKIKSRFQ RDEHVYKSFL
0301: DILNMYRKDN KSIQDVYHEV AVLFSDHKDL LEEFQHFLPD TSVSPQAGTA PRGGLVKREA LMPPASRGHI EKPRAFPSHT DRDASVDRPD VDHDRQRQRE
0401: KNKERKAERE RRDYDRDEKD GEQDSKELDV GQHKRKPFPS ANLAAGAEAH QGGHPEIHGI ASASASSYDN KDALKSAYTQ EFHFCEKVKE KLEYDAYQEF
0501: LKCLHIYSQE IITRSELKNL VSDILQHYPD LMVGFNEFLE HCENIDGFLA GVFSKKQPGR LIKTEDKERD KDHEREERNR DRDKEREKER ERLHPKEGPS
0601: QKPSVVKEKY LCKPISELDL SNCQRCTPSY RLLPKNYPMP PAGNKTDLGA SVLNDHWVSV TSGSEDYSFK HMRKNQYEES LFRCEDDRFE LDMLLESVNA
0701: ATKRVEELIE KMQDNSVKPE SPIRIDEHLT PLNLRCIERL YGDHGLDVMD VLRRNASVAL PVILSRLKQK QDEWSRCRSD FNKVWADIYA KNYHKSLDHR
0801: SFYFKQQDSK NLSIKSLLTE VKEINEKKRK EDDVLIAIAA GNRRPIVPNM SFEYVDANIH DDLYKIVKYS CGEVCGSDQL DKVMRIWTTF LEPILRVPPR
0901: SHGTVDADII KPKNGITKSG IANVGESNTS PDVVAAQQGH GDESMQHEQA PSAVARLARS VKGVAADSQN GSRDADRTAR RDDEASNAAL NEVSAVSTQN
1001: MPTERSAGQH SHMKGNSETT PGVNASKSSH AGVSIAGGAR AGHEALPSTE GGEIGKSGSS LNGGATGEGN KGRLFNEPAA SHNTSKVERE EGELSPNGDF
1101: EEDNFVPFED GASKTKEGST SRAFKVRPGQ VEPHAEAAGE NDADDEESTQ RSTEDSENAS EAGEDASGSE SGDGEQCSRE DHDEEEDMDH DQDAKAESEG
1201: EAEGTTENHD VEGGISLPGI SLPSSERFLY SAKPLAKHVP SSLHGRENRS SHIFYGNDSF YILFRLHQML YERLLSAKTN SSSAEKKWRI SKDTNPPDLY
1301: ARFIKALYNL LDGTSDNTKF EDDCRAIIGT QSYVLFTLDK LIYKVVKQLQ AIATDEMDSK LLQLYIYEKS RSPGRFFDLV YHENARVLLH DESMYRFECC
1401: SSPTRLSIQL MEYGHEKPEV TAVSIEPNFA SYLFSEYLSN SSGTMLPEGV FLGRNKRKHS NDGEPSDSLK AMDGIKVANG LECKISCKTS KVSYVLDTED
1501: FLFRLRKRRR LSPGGNVADK SPTSKKYAAK VQRFHLFLSK P
0001: MVGGGSAQKL TTNDALAYLK AVKDKFQDQR GKYDEFLEVM KNFKSQRVDT AGVITRVKEL FKGHQELILG FNTFLPKGFE ITLQPEDGQP PLKKRVEFEE
0101: AISFVNKIKT RFQGDDRVYK SFLDILNMYR RDSKSITEVY QEVAILFRDH SDLLVEFTHF LPDTSATASI PSVKTSVRER GVSLADKKDR IITPHPDHDY
0201: GTEHIDQDRE RPIKKENKEH MRGTNKENEH RDARDFEPHS KKEQFLNKKQ KLHIRGDDPA EISNQSKLSG AVPSSSTYDE KGAMKSYSQD LAIVDRVKEK
0301: LNASEYQEFL RCLNLFSKEI ISRPELQSLV GNLIGVYPDL MDSFIEFLVQ CEKNEGLLSG ILTKSKSTYL LQGEGKYPQP SLDNDRDQEH KRDDGLRDRD
0401: HEKERLEKAA ANLKWAKPIS ELDLSNCEQC TPSYRLLPKN YPISIASQKT EIGKLVLNDH WVSVTSGSED YSFSHMRKNQ YEESLFKCED DRFELDMLLE
0501: SVNSTTKHVE ELLTKINSNE LKTNSPIRVE DHLTALNLRC IERLYGDHGL DVMDVLKKNV SLALPVILTR LKQKQEEWAR CRSDFDKVWA EIYAKNYYKS
0601: LDHRSFYFKQ QDSKKLSMKA LLAEIKEITE KKREDDSLLA FAAGNRLSIS PDLEFDYPDH DLHEDLYQLI KYSCAEMCST EQLDKVMKIW TTFVEQIFGV
0701: PSRPQGAEDQ EDVVKSMNQN VKSGSSSAGE SEGSPHNYAS VADSRRSKSS RKANEHSQLG QTSNSERDGA AGRTSDALCE TAQHEKMLKN VVTSDEKPES
0801: KQAVSIERAH DSTALAVDGL LDQSNGGSSI VHMTGHCNNN LKPVTCGTEL ELKMNDGNGP KLEVGNKKLL TNGIAVEITS DQEMAGTSKV EREEGELSPN
0901: GDFEEDNFAV YAKTDFETFS KANDSTGNNI SGDRSREGEP SCLETRAEND AEGDENAARS SEDSRNEYEN GDVSGTESGG GEDPEDDLDN NNKGESEGEA
1001: ECMADAHDAE ENGSALPVSA RFLLHVKPLV KYVPSAIALH DKDKDSLKNS QVFYGNDSFY VLFRLHRILY ERILSAKVNS SSPEGKWRTS NTKNPTDSYA
1101: RFMTALYNLL DGTSDNAKFE DDCRAIIGTQ SYILFTLDKL IHKFIKHLQV VVADEMDNKL LQLYFYEKSR RPETIFDAVY YDNTRVLLPD ENIYRIECRL
1201: STPAKLSIQL MCNGLDKPDV TSVSIDPTFA AYLHNDFLSI QPNAREDRRI YLNRNKRKVC REDEQLYSTD EVKIKNGLEC KIACGSSKVS YVLETEDLLV
1301: RVKKRRKTLC HNQDSWVRQM RLQYYKNNFL
0101: AISFVNKIKT RFQGDDRVYK SFLDILNMYR RDSKSITEVY QEVAILFRDH SDLLVEFTHF LPDTSATASI PSVKTSVRER GVSLADKKDR IITPHPDHDY
0201: GTEHIDQDRE RPIKKENKEH MRGTNKENEH RDARDFEPHS KKEQFLNKKQ KLHIRGDDPA EISNQSKLSG AVPSSSTYDE KGAMKSYSQD LAIVDRVKEK
0301: LNASEYQEFL RCLNLFSKEI ISRPELQSLV GNLIGVYPDL MDSFIEFLVQ CEKNEGLLSG ILTKSKSTYL LQGEGKYPQP SLDNDRDQEH KRDDGLRDRD
0401: HEKERLEKAA ANLKWAKPIS ELDLSNCEQC TPSYRLLPKN YPISIASQKT EIGKLVLNDH WVSVTSGSED YSFSHMRKNQ YEESLFKCED DRFELDMLLE
0501: SVNSTTKHVE ELLTKINSNE LKTNSPIRVE DHLTALNLRC IERLYGDHGL DVMDVLKKNV SLALPVILTR LKQKQEEWAR CRSDFDKVWA EIYAKNYYKS
0601: LDHRSFYFKQ QDSKKLSMKA LLAEIKEITE KKREDDSLLA FAAGNRLSIS PDLEFDYPDH DLHEDLYQLI KYSCAEMCST EQLDKVMKIW TTFVEQIFGV
0701: PSRPQGAEDQ EDVVKSMNQN VKSGSSSAGE SEGSPHNYAS VADSRRSKSS RKANEHSQLG QTSNSERDGA AGRTSDALCE TAQHEKMLKN VVTSDEKPES
0801: KQAVSIERAH DSTALAVDGL LDQSNGGSSI VHMTGHCNNN LKPVTCGTEL ELKMNDGNGP KLEVGNKKLL TNGIAVEITS DQEMAGTSKV EREEGELSPN
0901: GDFEEDNFAV YAKTDFETFS KANDSTGNNI SGDRSREGEP SCLETRAEND AEGDENAARS SEDSRNEYEN GDVSGTESGG GEDPEDDLDN NNKGESEGEA
1001: ECMADAHDAE ENGSALPVSA RFLLHVKPLV KYVPSAIALH DKDKDSLKNS QVFYGNDSFY VLFRLHRILY ERILSAKVNS SSPEGKWRTS NTKNPTDSYA
1101: RFMTALYNLL DGTSDNAKFE DDCRAIIGTQ SYILFTLDKL IHKFIKHLQV VVADEMDNKL LQLYFYEKSR RPETIFDAVY YDNTRVLLPD ENIYRIECRL
1201: STPAKLSIQL MCNGLDKPDV TSVSIDPTFA AYLHNDFLSI QPNAREDRRI YLNRNKRKVC REDEQLYSTD EVKIKNGLEC KIACGSSKVS YVLETEDLLV
1301: RVKKRRKTLC HNQDSWVRQM RLQYYKNNFL
Arabidopsis Description
SNL3SIN3-like 3 [Source:TAIR;Acc:AT1G24190]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.