Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU1Hr1G093530.1 | Barley | nucleus | 100.0 | 100.0 |
| HORVU1Hr1G093550.1 | Barley | nucleus | 92.82 | 98.93 |
| TraesCS1D01G438700.1 | Wheat | cytosol | 50.63 | 80.56 |
| TraesCS1B01G464000.1 | Wheat | nucleus | 83.5 | 80.07 |
| TraesCS1A01G429200.1 | Wheat | nucleus | 83.63 | 78.39 |
| HORVU1Hr1G093490.1 | Barley | nucleus | 67.63 | 69.29 |
| Zm00001d009729_P001 | Maize | nucleus | 14.11 | 45.71 |
| KXG22653 | Sorghum | nucleus | 43.58 | 41.34 |
| Os05t0588700-01 | Rice | nucleus | 42.07 | 38.93 |
| CDY71516 | Canola | cytosol, mitochondrion, nucleus | 8.44 | 25.77 |
| GSMUA_AchrUn_... | Banana | cytosol | 13.1 | 25.49 |
| GSMUA_AchrUn_... | Banana | nucleus | 7.81 | 18.56 |
| GSMUA_Achr7P17160_001 | Banana | nucleus | 22.54 | 16.35 |
| HORVU1Hr1G000290.3 | Barley | nucleus | 26.07 | 15.55 |
| HORVU3Hr1G000540.2 | Barley | plastid | 26.32 | 13.56 |
Protein Annotations
| Gene3D:1.20.1160.11 | MapMan:35.1 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| InterPro:HDAC_interact_dom | EnsemblPlantsGene:HORVU1Hr1G093540 | EnsemblPlants:HORVU1Hr1G093540.1 | InterPro:IPR003822 | UniProt:M0V9N6 | InterPro:PAH |
| InterPro:PAH_sf | PFAM:PF02671 | PFAM:PF08295 | PFAM:PF16879 | PFscan:PS51477 | PANTHER:PTHR12346 |
| PANTHER:PTHR12346:SF10 | SMART:SM00761 | SUPFAM:SSF47762 | InterPro:Sin3_C | UniParc:UPI0002966CA7 | SEG:seg |
Description
No Description!
Coordinates
chrchr1H:+:553358124..553362405
Molecular Weight (calculated)
90338.2 Da
IEP (calculated)
6.572
GRAVY (calculated)
-0.602
Length
794 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSDEADDD NYGYKREKKE YMLETMQCLL FARDNLPQDV YHEFVKTMTE VWKNCADPDG QIRNICPENC IETVLKLFQG WATVKQSFLN FTEGRSPVEG
101: NGDVGADVVN PLLQKPMDFL SRLKACPKMR DDDYAAFLQT MHDFCRDRTM TPLEVYKNVK RCMRNCPELL KEFVDNYLPA DLKAVLRDKK VDNHSLDGIH
201: MKEGYGEWPH AEEDEEDKVK PLPDWTASKA EKLPPEVDPK KLERACTPSY YLLPYNLTLH SSYWTKLGRS ILNDTLVCSV SGMESSKHKA TNGYETNILY
301: CEEDMFESDM LLHRFRATAD LIANLQTLPS SRLRINEHLT PLHRRCIEKL YDDDPDLDDL LESQNTSAVL DILLSRLNQK VEDLSEARSY LHKVHCSQII
401: AKNYCRSLDH RGTSFKQLDA KRMSQKALLA EANEMNKKKN VGDKYADTDM HNDISKIISS ACVSEEKQVM NWAKIVYPFL SAHCLWPSSK ETVAPAKACE
501: HCGTSKDFLS SIPDALPANK LPSFSKRGEF TRKNSNDFSS SHDGFGPGIE EGEFIPDPEI IESDAMLGAG KEPVSCDVAA SGSDGLNSRC RIIGTSEPST
601: CDHGNKYEKQ HESRQHSKTS AKVRGVKGGT CCFLIVLRRL YQILYDRLQT AKGLCTDDQL YAEFKEKSNK LVAHCIDNSN FEDFCLKFLG PKSFELFTLD
701: IVINRVIKQL CIIYSRDQDN SLFQFLENIR RPVVPKVVVR HQNFPNNPSN GLLKHDQGEQ EKEALAATVK RPLHFERRKK RKLENSATSS SQLG
101: NGDVGADVVN PLLQKPMDFL SRLKACPKMR DDDYAAFLQT MHDFCRDRTM TPLEVYKNVK RCMRNCPELL KEFVDNYLPA DLKAVLRDKK VDNHSLDGIH
201: MKEGYGEWPH AEEDEEDKVK PLPDWTASKA EKLPPEVDPK KLERACTPSY YLLPYNLTLH SSYWTKLGRS ILNDTLVCSV SGMESSKHKA TNGYETNILY
301: CEEDMFESDM LLHRFRATAD LIANLQTLPS SRLRINEHLT PLHRRCIEKL YDDDPDLDDL LESQNTSAVL DILLSRLNQK VEDLSEARSY LHKVHCSQII
401: AKNYCRSLDH RGTSFKQLDA KRMSQKALLA EANEMNKKKN VGDKYADTDM HNDISKIISS ACVSEEKQVM NWAKIVYPFL SAHCLWPSSK ETVAPAKACE
501: HCGTSKDFLS SIPDALPANK LPSFSKRGEF TRKNSNDFSS SHDGFGPGIE EGEFIPDPEI IESDAMLGAG KEPVSCDVAA SGSDGLNSRC RIIGTSEPST
601: CDHGNKYEKQ HESRQHSKTS AKVRGVKGGT CCFLIVLRRL YQILYDRLQT AKGLCTDDQL YAEFKEKSNK LVAHCIDNSN FEDFCLKFLG PKSFELFTLD
701: IVINRVIKQL CIIYSRDQDN SLFQFLENIR RPVVPKVVVR HQNFPNNPSN GLLKHDQGEQ EKEALAATVK RPLHFERRKK RKLENSATSS SQLG
0001: MVGGGSAQKL TTNDALAYLK AVKDKFQDQR GKYDEFLEVM KNFKSQRVDT AGVITRVKEL FKGHQELILG FNTFLPKGFE ITLQPEDGQP PLKKRVEFEE
0101: AISFVNKIKT RFQGDDRVYK SFLDILNMYR RDSKSITEVY QEVAILFRDH SDLLVEFTHF LPDTSATASI PSVKTSVRER GVSLADKKDR IITPHPDHDY
0201: GTEHIDQDRE RPIKKENKEH MRGTNKENEH RDARDFEPHS KKEQFLNKKQ KLHIRGDDPA EISNQSKLSG AVPSSSTYDE KGAMKSYSQD LAIVDRVKEK
0301: LNASEYQEFL RCLNLFSKEI ISRPELQSLV GNLIGVYPDL MDSFIEFLVQ CEKNEGLLSG ILTKSKSTYL LQGEGKYPQP SLDNDRDQEH KRDDGLRDRD
0401: HEKERLEKAA ANLKWAKPIS ELDLSNCEQC TPSYRLLPKN YPISIASQKT EIGKLVLNDH WVSVTSGSED YSFSHMRKNQ YEESLFKCED DRFELDMLLE
0501: SVNSTTKHVE ELLTKINSNE LKTNSPIRVE DHLTALNLRC IERLYGDHGL DVMDVLKKNV SLALPVILTR LKQKQEEWAR CRSDFDKVWA EIYAKNYYKS
0601: LDHRSFYFKQ QDSKKLSMKA LLAEIKEITE KKREDDSLLA FAAGNRLSIS PDLEFDYPDH DLHEDLYQLI KYSCAEMCST EQLDKVMKIW TTFVEQIFGV
0701: PSRPQGAEDQ EDVVKSMNQN VKSGSSSAGE SEGSPHNYAS VADSRRSKSS RKANEHSQLG QTSNSERDGA AGRTSDALCE TAQHEKMLKN VVTSDEKPES
0801: KQAVSIERAH DSTALAVDGL LDQSNGGSSI VHMTGHCNNN LKPVTCGTEL ELKMNDGNGP KLEVGNKKLL TNGIAVEITS DQEMAGTSKV EREEGELSPN
0901: GDFEEDNFAV YAKTDFETFS KANDSTGNNI SGDRSREGEP SCLETRAEND AEGDENAARS SEDSRNEYEN GDVSGTESGG GEDPEDDLDN NNKGESEGEA
1001: ECMADAHDAE ENGSALPVSA RFLLHVKPLV KYVPSAIALH DKDKDSLKNS QVFYGNDSFY VLFRLHRILY ERILSAKVNS SSPEGKWRTS NTKNPTDSYA
1101: RFMTALYNLL DGTSDNAKFE DDCRAIIGTQ SYILFTLDKL IHKFIKHLQV VVADEMDNKL LQLYFYEKSR RPETIFDAVY YDNTRVLLPD ENIYRIECRL
1201: STPAKLSIQL MCNGLDKPDV TSVSIDPTFA AYLHNDFLSI QPNAREDRRI YLNRNKRKVC REDEQLYSTD EVKIKNGLEC KIACGSSKVS YVLETEDLLV
1301: RVKKRRKTLC HNQDSWVRQM RLQYYKNNFL
0101: AISFVNKIKT RFQGDDRVYK SFLDILNMYR RDSKSITEVY QEVAILFRDH SDLLVEFTHF LPDTSATASI PSVKTSVRER GVSLADKKDR IITPHPDHDY
0201: GTEHIDQDRE RPIKKENKEH MRGTNKENEH RDARDFEPHS KKEQFLNKKQ KLHIRGDDPA EISNQSKLSG AVPSSSTYDE KGAMKSYSQD LAIVDRVKEK
0301: LNASEYQEFL RCLNLFSKEI ISRPELQSLV GNLIGVYPDL MDSFIEFLVQ CEKNEGLLSG ILTKSKSTYL LQGEGKYPQP SLDNDRDQEH KRDDGLRDRD
0401: HEKERLEKAA ANLKWAKPIS ELDLSNCEQC TPSYRLLPKN YPISIASQKT EIGKLVLNDH WVSVTSGSED YSFSHMRKNQ YEESLFKCED DRFELDMLLE
0501: SVNSTTKHVE ELLTKINSNE LKTNSPIRVE DHLTALNLRC IERLYGDHGL DVMDVLKKNV SLALPVILTR LKQKQEEWAR CRSDFDKVWA EIYAKNYYKS
0601: LDHRSFYFKQ QDSKKLSMKA LLAEIKEITE KKREDDSLLA FAAGNRLSIS PDLEFDYPDH DLHEDLYQLI KYSCAEMCST EQLDKVMKIW TTFVEQIFGV
0701: PSRPQGAEDQ EDVVKSMNQN VKSGSSSAGE SEGSPHNYAS VADSRRSKSS RKANEHSQLG QTSNSERDGA AGRTSDALCE TAQHEKMLKN VVTSDEKPES
0801: KQAVSIERAH DSTALAVDGL LDQSNGGSSI VHMTGHCNNN LKPVTCGTEL ELKMNDGNGP KLEVGNKKLL TNGIAVEITS DQEMAGTSKV EREEGELSPN
0901: GDFEEDNFAV YAKTDFETFS KANDSTGNNI SGDRSREGEP SCLETRAEND AEGDENAARS SEDSRNEYEN GDVSGTESGG GEDPEDDLDN NNKGESEGEA
1001: ECMADAHDAE ENGSALPVSA RFLLHVKPLV KYVPSAIALH DKDKDSLKNS QVFYGNDSFY VLFRLHRILY ERILSAKVNS SSPEGKWRTS NTKNPTDSYA
1101: RFMTALYNLL DGTSDNAKFE DDCRAIIGTQ SYILFTLDKL IHKFIKHLQV VVADEMDNKL LQLYFYEKSR RPETIFDAVY YDNTRVLLPD ENIYRIECRL
1201: STPAKLSIQL MCNGLDKPDV TSVSIDPTFA AYLHNDFLSI QPNAREDRRI YLNRNKRKVC REDEQLYSTD EVKIKNGLEC KIACGSSKVS YVLETEDLLV
1301: RVKKRRKTLC HNQDSWVRQM RLQYYKNNFL
Arabidopsis Description
SNL3SIN3-like 3 [Source:TAIR;Acc:AT1G24190]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.