Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_AchrUn_... | Banana | nucleus | 18.63 | 61.08 |
| GSMUA_AchrUn_... | Banana | cytosol | 20.27 | 54.41 |
| CDY71516 | Canola | cytosol, mitochondrion, nucleus | 9.22 | 38.85 |
| Zm00001d009729_P001 | Maize | nucleus | 6.39 | 28.57 |
| TraesCS1D01G438700.1 | Wheat | cytosol | 10.68 | 23.45 |
| Os05t0588700-01 | Rice | nucleus | 18.26 | 23.31 |
| KXG22653 | Sorghum | nucleus | 17.63 | 23.06 |
| HORVU1Hr1G093550.1 | Barley | nucleus | 15.43 | 22.68 |
| HORVU1Hr1G093530.1 | Barley | nucleus | 16.35 | 22.54 |
| HORVU1Hr1G093540.1 | Barley | nucleus | 16.35 | 22.54 |
| TraesCS1D01G438600.1 | Wheat | nucleus | 15.98 | 22.44 |
| TraesCS1B01G463900.1 | Wheat | nucleus | 15.71 | 22.05 |
| TraesCS1A01G429100.1 | Wheat | nucleus | 16.16 | 21.85 |
| HORVU1Hr1G093490.1 | Barley | nucleus | 15.43 | 21.81 |
| TraesCS1B01G464000.1 | Wheat | nucleus | 16.44 | 21.74 |
| GSMUA_Achr1P20690_001 | Banana | nucleus | 26.3 | 21.48 |
| TraesCS1A01G429200.1 | Wheat | nucleus | 16.44 | 21.25 |
| GSMUA_Achr2P09580_001 | Banana | nucleus | 26.03 | 20.93 |
| GSMUA_Achr9P00800_001 | Banana | nucleus | 26.39 | 20.7 |
| GSMUA_Achr11P... | Banana | nucleus | 25.94 | 20.61 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr7P17160_001 | EnsemblPlants:GSMUA_Achr7T17160_001 | EnsemblPlantsGene:GSMUA_Achr7G17160_001 | InterPro:HDAC_interact_dom | InterPro:Sin3_C | ncoils:Coil |
| PANTHER:PTHR12346 | PANTHER:PTHR12346:SF21 | PFAM:PF08295 | PFAM:PF16879 | SEG:seg | SMART:SM00761 |
| UniParc:UPI0002953227 | UniProt:M0TIA3 | MapMan:35.1 | : | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr7G17160_001]
Coordinates
chr7:-:18780006..18793679
Molecular Weight (calculated)
125126.0 Da
IEP (calculated)
4.823
GRAVY (calculated)
-0.598
Length
1095 amino acids
Sequence
(BLAST)
(BLAST)
0001: MFQKEGRLSL YADCHLSNLE HSKSQKYVER HSVVGKDQRG SSKMCMVQKE THKNLNNLLP VQKPSQRFDH CVAEPPHKDH RARLVDEEEI PMDMDHEGDG
0101: LQEKLSENDR IRDTKRLFGG SSVLKDKDPC KNNLFGDDEE CDHGKGYLKP DTSKCHRSAP GYVILPDHCH ILPPSYMSEI GSAVLNDSLV CMTSGSENNS
0201: FKIMHWNKYE ECLIRCDDDR FELDMLLKLI TVTAKRVEML LKVKGDKVEP ESDIPIENYF TSQDLRCIEL LYDEYGLDFI DAVRENVSSA LPVILNRLKQ
0301: KEEEILEKLS DFSEVWTEAQ ATNHLRSLDH RSFYFKQQDP KTLSSKALLA ECKQVNEMDD NMLLDRIAGG HFIPVVFEYT DAEIHDVLYK IIELSCHANC
0401: TLEGELDKVM NIWTTFFEPM FGVFWQLQDT ESNKENKKHD YRSSLSSSGQ CSGGSDAEVA YESLISGHTS NLSVICTQIA KEQHENFECK SHSSVVALCI
0501: DVLFASSFGS VLVLELSYDT CIIHSDTDCH GSYEIDWDVT LCSLSFYQWS ELGKFSFFFS LYRSAYSSTF VFSINLIHIN LIRPLCGGQY QCWYTDTYQC
0601: FEEQEKEDEK AVEEEEEEMD EGGRSRKMKR RRGVGSCVPQ RYLSDFVVQL GGQNQESVVD RTCGDPIRFN DKVHQYNEVS AVCNNEDEKE EGELSPEVYF
0701: EENIVVDSED AEAQVNGDAE NEGIESASGP FKDSPNAHEA VVDASHGQCD DNDVQESSHD NEEEDEIDHD AKGGSVQVDK MSDDADNFQG EGTNLPFSAC
0801: QLKTSKPLTE HAPRLLHNED RQTRIFYGST SFYLLLKIHQ ILYKRILSAK TNSSAAEIRS SNQDNANHHN QYARFKDALY SYLGGLTDKS NFEDDCLAFI
0901: GPQSYILSTL DILVHKLVKQ LKAVAISETN NKFLQLYAYE KSRGPGRFDD LVYLQNARVI NNGDLFRFEC SSNPTRISIQ LLEHPNDETE ANVVPSNPDF
1001: AAYFYSGFLQ NISDEKGTYK GFLRRNIRKF HKYHKCNCDG HCATCEPMER IQVTNGLQCR ILNSFKVLYV MGTEDLLFRK EKRNRFAYKP KRFDL
0101: LQEKLSENDR IRDTKRLFGG SSVLKDKDPC KNNLFGDDEE CDHGKGYLKP DTSKCHRSAP GYVILPDHCH ILPPSYMSEI GSAVLNDSLV CMTSGSENNS
0201: FKIMHWNKYE ECLIRCDDDR FELDMLLKLI TVTAKRVEML LKVKGDKVEP ESDIPIENYF TSQDLRCIEL LYDEYGLDFI DAVRENVSSA LPVILNRLKQ
0301: KEEEILEKLS DFSEVWTEAQ ATNHLRSLDH RSFYFKQQDP KTLSSKALLA ECKQVNEMDD NMLLDRIAGG HFIPVVFEYT DAEIHDVLYK IIELSCHANC
0401: TLEGELDKVM NIWTTFFEPM FGVFWQLQDT ESNKENKKHD YRSSLSSSGQ CSGGSDAEVA YESLISGHTS NLSVICTQIA KEQHENFECK SHSSVVALCI
0501: DVLFASSFGS VLVLELSYDT CIIHSDTDCH GSYEIDWDVT LCSLSFYQWS ELGKFSFFFS LYRSAYSSTF VFSINLIHIN LIRPLCGGQY QCWYTDTYQC
0601: FEEQEKEDEK AVEEEEEEMD EGGRSRKMKR RRGVGSCVPQ RYLSDFVVQL GGQNQESVVD RTCGDPIRFN DKVHQYNEVS AVCNNEDEKE EGELSPEVYF
0701: EENIVVDSED AEAQVNGDAE NEGIESASGP FKDSPNAHEA VVDASHGQCD DNDVQESSHD NEEEDEIDHD AKGGSVQVDK MSDDADNFQG EGTNLPFSAC
0801: QLKTSKPLTE HAPRLLHNED RQTRIFYGST SFYLLLKIHQ ILYKRILSAK TNSSAAEIRS SNQDNANHHN QYARFKDALY SYLGGLTDKS NFEDDCLAFI
0901: GPQSYILSTL DILVHKLVKQ LKAVAISETN NKFLQLYAYE KSRGPGRFDD LVYLQNARVI NNGDLFRFEC SSNPTRISIQ LLEHPNDETE ANVVPSNPDF
1001: AAYFYSGFLQ NISDEKGTYK GFLRRNIRKF HKYHKCNCDG HCATCEPMER IQVTNGLQCR ILNSFKVLYV MGTEDLLFRK EKRNRFAYKP KRFDL
0001: MVGGGSAQKL TTNDALAYLK AVKDKFQDQR GKYDEFLEVM KNFKSQRVDT AGVITRVKEL FKGHQELILG FNTFLPKGFE ITLQPEDGQP PLKKRVEFEE
0101: AISFVNKIKT RFQGDDRVYK SFLDILNMYR RDSKSITEVY QEVAILFRDH SDLLVEFTHF LPDTSATASI PSVKTSVRER GVSLADKKDR IITPHPDHDY
0201: GTEHIDQDRE RPIKKENKEH MRGTNKENEH RDARDFEPHS KKEQFLNKKQ KLHIRGDDPA EISNQSKLSG AVPSSSTYDE KGAMKSYSQD LAIVDRVKEK
0301: LNASEYQEFL RCLNLFSKEI ISRPELQSLV GNLIGVYPDL MDSFIEFLVQ CEKNEGLLSG ILTKSKSTYL LQGEGKYPQP SLDNDRDQEH KRDDGLRDRD
0401: HEKERLEKAA ANLKWAKPIS ELDLSNCEQC TPSYRLLPKN YPISIASQKT EIGKLVLNDH WVSVTSGSED YSFSHMRKNQ YEESLFKCED DRFELDMLLE
0501: SVNSTTKHVE ELLTKINSNE LKTNSPIRVE DHLTALNLRC IERLYGDHGL DVMDVLKKNV SLALPVILTR LKQKQEEWAR CRSDFDKVWA EIYAKNYYKS
0601: LDHRSFYFKQ QDSKKLSMKA LLAEIKEITE KKREDDSLLA FAAGNRLSIS PDLEFDYPDH DLHEDLYQLI KYSCAEMCST EQLDKVMKIW TTFVEQIFGV
0701: PSRPQGAEDQ EDVVKSMNQN VKSGSSSAGE SEGSPHNYAS VADSRRSKSS RKANEHSQLG QTSNSERDGA AGRTSDALCE TAQHEKMLKN VVTSDEKPES
0801: KQAVSIERAH DSTALAVDGL LDQSNGGSSI VHMTGHCNNN LKPVTCGTEL ELKMNDGNGP KLEVGNKKLL TNGIAVEITS DQEMAGTSKV EREEGELSPN
0901: GDFEEDNFAV YAKTDFETFS KANDSTGNNI SGDRSREGEP SCLETRAEND AEGDENAARS SEDSRNEYEN GDVSGTESGG GEDPEDDLDN NNKGESEGEA
1001: ECMADAHDAE ENGSALPVSA RFLLHVKPLV KYVPSAIALH DKDKDSLKNS QVFYGNDSFY VLFRLHRILY ERILSAKVNS SSPEGKWRTS NTKNPTDSYA
1101: RFMTALYNLL DGTSDNAKFE DDCRAIIGTQ SYILFTLDKL IHKFIKHLQV VVADEMDNKL LQLYFYEKSR RPETIFDAVY YDNTRVLLPD ENIYRIECRL
1201: STPAKLSIQL MCNGLDKPDV TSVSIDPTFA AYLHNDFLSI QPNAREDRRI YLNRNKRKVC REDEQLYSTD EVKIKNGLEC KIACGSSKVS YVLETEDLLV
1301: RVKKRRKTLC HNQDSWVRQM RLQYYKNNFL
0101: AISFVNKIKT RFQGDDRVYK SFLDILNMYR RDSKSITEVY QEVAILFRDH SDLLVEFTHF LPDTSATASI PSVKTSVRER GVSLADKKDR IITPHPDHDY
0201: GTEHIDQDRE RPIKKENKEH MRGTNKENEH RDARDFEPHS KKEQFLNKKQ KLHIRGDDPA EISNQSKLSG AVPSSSTYDE KGAMKSYSQD LAIVDRVKEK
0301: LNASEYQEFL RCLNLFSKEI ISRPELQSLV GNLIGVYPDL MDSFIEFLVQ CEKNEGLLSG ILTKSKSTYL LQGEGKYPQP SLDNDRDQEH KRDDGLRDRD
0401: HEKERLEKAA ANLKWAKPIS ELDLSNCEQC TPSYRLLPKN YPISIASQKT EIGKLVLNDH WVSVTSGSED YSFSHMRKNQ YEESLFKCED DRFELDMLLE
0501: SVNSTTKHVE ELLTKINSNE LKTNSPIRVE DHLTALNLRC IERLYGDHGL DVMDVLKKNV SLALPVILTR LKQKQEEWAR CRSDFDKVWA EIYAKNYYKS
0601: LDHRSFYFKQ QDSKKLSMKA LLAEIKEITE KKREDDSLLA FAAGNRLSIS PDLEFDYPDH DLHEDLYQLI KYSCAEMCST EQLDKVMKIW TTFVEQIFGV
0701: PSRPQGAEDQ EDVVKSMNQN VKSGSSSAGE SEGSPHNYAS VADSRRSKSS RKANEHSQLG QTSNSERDGA AGRTSDALCE TAQHEKMLKN VVTSDEKPES
0801: KQAVSIERAH DSTALAVDGL LDQSNGGSSI VHMTGHCNNN LKPVTCGTEL ELKMNDGNGP KLEVGNKKLL TNGIAVEITS DQEMAGTSKV EREEGELSPN
0901: GDFEEDNFAV YAKTDFETFS KANDSTGNNI SGDRSREGEP SCLETRAEND AEGDENAARS SEDSRNEYEN GDVSGTESGG GEDPEDDLDN NNKGESEGEA
1001: ECMADAHDAE ENGSALPVSA RFLLHVKPLV KYVPSAIALH DKDKDSLKNS QVFYGNDSFY VLFRLHRILY ERILSAKVNS SSPEGKWRTS NTKNPTDSYA
1101: RFMTALYNLL DGTSDNAKFE DDCRAIIGTQ SYILFTLDKL IHKFIKHLQV VVADEMDNKL LQLYFYEKSR RPETIFDAVY YDNTRVLLPD ENIYRIECRL
1201: STPAKLSIQL MCNGLDKPDV TSVSIDPTFA AYLHNDFLSI QPNAREDRRI YLNRNKRKVC REDEQLYSTD EVKIKNGLEC KIACGSSKVS YVLETEDLLV
1301: RVKKRRKTLC HNQDSWVRQM RLQYYKNNFL
Arabidopsis Description
SNL3SIN3-like 3 [Source:TAIR;Acc:AT1G24190]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.