Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr1P20690_001 | Banana | nucleus | 75.33 | 77.4 |
| GSMUA_Achr9P00800_001 | Banana | nucleus | 74.82 | 73.85 |
| GSMUA_Achr2P09580_001 | Banana | nucleus | 70.75 | 71.59 |
| EES00449 | Sorghum | nucleus | 64.88 | 62.04 |
| Os01t0109700-01 | Rice | nucleus | 59.58 | 61.92 |
| Zm00001d008429_P019 | Maize | nucleus | 64.3 | 61.4 |
| Zm00001d040123_P007 | Maize | nucleus | 63.64 | 61.12 |
| CDY23529 | Canola | cytosol | 6.97 | 60.76 |
| HORVU1Hr1G000290.3 | Barley | nucleus | 58.13 | 60.18 |
| TraesCS1B01G002000.1 | Wheat | nucleus | 56.6 | 60.14 |
| TraesCS1A01G002700.1 | Wheat | nucleus | 57.98 | 59.98 |
| CDY48380 | Canola | cytosol | 6.82 | 59.49 |
| VIT_01s0026g01010.t01 | Wine grape | nucleus | 62.55 | 59.41 |
| TraesCS1D01G004900.4 | Wheat | nucleus | 57.98 | 59.41 |
| Os05t0100500-01 | Rice | plastid | 15.82 | 59.24 |
| TraesCSU01G039900.1 | Wheat | nucleus | 59.72 | 57.59 |
| TraesCS3B01G005900.1 | Wheat | nucleus | 59.72 | 57.39 |
| TraesCS3D01G007600.2 | Wheat | nucleus, plastid | 56.68 | 56.64 |
| KRH69432 | Soybean | nucleus | 58.56 | 56.43 |
| KRH74716 | Soybean | nucleus | 53.85 | 56.43 |
| AT1G70030.1 | Thale cress | cytosol | 6.53 | 56.25 |
| AT1G24200.1 | Thale cress | cytosol | 7.84 | 55.1 |
| KXG20992 | Sorghum | nucleus | 48.84 | 53.93 |
| Bra003968.1-P | Field mustard | cytosol | 6.02 | 53.55 |
| CDY48381 | Canola | cytosol | 6.02 | 53.55 |
| CDY23528 | Canola | cytosol | 6.02 | 53.55 |
| HORVU3Hr1G000540.2 | Barley | plastid | 59.72 | 53.41 |
| Zm00001d035776_P004 | Maize | nucleus | 48.48 | 52.97 |
| CDY11625 | Canola | nucleus | 48.33 | 51.63 |
| CDY38781 | Canola | nucleus | 48.26 | 51.59 |
| Bra016241.1-P | Field mustard | nucleus | 48.19 | 51.51 |
| CDX68358 | Canola | nucleus | 47.97 | 51.48 |
| CDY23527 | Canola | nucleus | 48.19 | 51.31 |
| AT1G70060.2 | Thale cress | nucleus | 48.62 | 50.53 |
| Bra003967.1-P | Field mustard | nucleus | 47.82 | 50.11 |
| AT1G24190.3 | Thale cress | nucleus | 47.9 | 49.33 |
| GSMUA_AchrUn_... | Banana | cytosol | 12.7 | 42.89 |
| GSMUA_AchrUn_... | Banana | nucleus | 8.49 | 35.03 |
| Zm00001d041450_P002 | Maize | nucleus | 18.29 | 32.06 |
| GSMUA_Achr7P17160_001 | Banana | nucleus | 20.61 | 25.94 |
| Zm00001d041453_P001 | Maize | nucleus | 21.55 | 25.71 |
Protein Annotations
| Gene3D:1.20.1160.11 | MapMan:12.3.2.4.2 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| EnsemblPlantsGene:GSMUA_Achr11G13590_001 | EnsemblPlants:GSMUA_Achr11P13590_001 | EnsemblPlants:GSMUA_Achr11T13590_001 | InterPro:HDAC_interact_dom | InterPro:IPR003822 | UniProt:M0RRY9 |
| InterPro:PAH | InterPro:PAH_sf | PFAM:PF02671 | PFAM:PF08295 | PFAM:PF16879 | PFscan:PS51477 |
| PANTHER:PTHR12346 | PANTHER:PTHR12346:SF21 | SMART:SM00761 | SUPFAM:SSF47762 | InterPro:Sin3_C | UniParc:UPI000295592F |
| SEG:seg | : | : | : | : | : |
Description
Putative Paired amphipathic helix protein Sin3-like 4 [Source:GMGC_GENE;Acc:GSMUA_Achr11G13590_001]
Coordinates
chr11:-:14571566..14590438
Molecular Weight (calculated)
155906.0 Da
IEP (calculated)
5.091
GRAVY (calculated)
-0.644
Length
1378 amino acids
Sequence
(BLAST)
(BLAST)
0001: MGSQLKRPNV PRADLSGQTH MPPAPAVGTT PKLTTNDALA YLKAVKDVFQ DKREKYDEFL EVMKDFKSQR IDTNGVIMRV KELFKGHLDL ILGFNTFLPK
0101: GYEIKQPEDK KPVEFEEAIT FVNKIKNRFQ NDDRVYKSFL DILNMYRRED KSIHEVYQEV AALFQNHQDL LEEFIHFLPD ASATFAPQHA YSGRGFVRRD
0201: DRSFLMPAVR NVYADKRETA YMSRTDRDSS VDCLDTEHGR QRRRAEKETD KKEDRDKRDH ERDEDSEHDC GDLENSECRH KISSRRVDDS IDEPMQQGGD
0301: RAKNIGIYSF SVSSFDDKNA LKSVYTREFN FCEKVKEKLY PDTYQEFLKC LHIYSKEIIN RTELKNLLSL LLLSLSIASS TIAVSDILGK FPDLMEGFNE
0401: FLAHCENIDG FLEGVFRKRH MARPVKIEDR DRERECALFN SRDGTSHKSS LLSSKEKYNI CKPISELDLS NCQRCTPSYR LLPKNYSIPP ASHRTELGAS
0501: VLNDVWVSVT SGSEDYSFKH MRKNQYEESL FRCEDDRFEL DMLLESVNAT TKLVEDLLEM MQDPVKSENP FRVEDHLTSL HLRCIERLYG DHGLDVMDVL
0601: RKNASLALPV ILTRLKQKQE EWFRCRSDFN KVWAEIYAKN YHKSLDHRSF YFKQQDSKSL STKALLAEIK DINDKMKKED DVLLAIAGRN RRPIVPTMEF
0701: EYIDMDIHED LYRIIKYSCG EVCTFSDQFD KVMKIWTTIL EPLFGVQPRN QGVKSLQDVK PKSHAVKTIM PGLGESNGNP GAYNTKQCNG DQNIPSEQAP
0801: SFTTKSADGD TTVTENGFYD TIQATNCGEN ICSSPLQGRV QCCASVADEM PEITVPDSVA GRAEQSHNKI SQEIASGVSC GSIGTGHCGT ETLVEARATN
0901: ENLPYSEGGQ TGLQIISING GSITESNKYY RPNDVFVSLN NLKVEREEGE LSPNGDLDED NCVALEDAAT NASCGEDAGD NGSVAAADDE CEESAQRSTE
1001: VSGNASEAGE DVSSSESGDG EECSHEDQEE EDDAEHDDQD AKAISEGKAD AHDAEGELFL HTVKPLARHV PAALHAEQDK SSRIFYGNDS YYVLFRLHQT
1101: LYERILSAKT NSSASEKKWK SSKDTSPPDL YAKFMSALFN LLDGSADNTK FEDDCRGIIG TQSYVLFTMD KLIYKIVKQL QAIASDETDN KLLQLYLYEK
1201: SRQTGRSFDL VYHENACVLH DESIYRFEFF SQTSDVTQLS IQLLEHGHVN PEAAAVSVDP NFSSYLYSDF LSSVLVRKGA QGVFLGRNKR KYGDDNEHSV
1301: VGKAMDGIQV INGLECKISS CSSKVSYVLD TEDILFRARN KRRCSGGTIC HDHSQPSQVH DAKVQRFNNL LSTFLSRT
0101: GYEIKQPEDK KPVEFEEAIT FVNKIKNRFQ NDDRVYKSFL DILNMYRRED KSIHEVYQEV AALFQNHQDL LEEFIHFLPD ASATFAPQHA YSGRGFVRRD
0201: DRSFLMPAVR NVYADKRETA YMSRTDRDSS VDCLDTEHGR QRRRAEKETD KKEDRDKRDH ERDEDSEHDC GDLENSECRH KISSRRVDDS IDEPMQQGGD
0301: RAKNIGIYSF SVSSFDDKNA LKSVYTREFN FCEKVKEKLY PDTYQEFLKC LHIYSKEIIN RTELKNLLSL LLLSLSIASS TIAVSDILGK FPDLMEGFNE
0401: FLAHCENIDG FLEGVFRKRH MARPVKIEDR DRERECALFN SRDGTSHKSS LLSSKEKYNI CKPISELDLS NCQRCTPSYR LLPKNYSIPP ASHRTELGAS
0501: VLNDVWVSVT SGSEDYSFKH MRKNQYEESL FRCEDDRFEL DMLLESVNAT TKLVEDLLEM MQDPVKSENP FRVEDHLTSL HLRCIERLYG DHGLDVMDVL
0601: RKNASLALPV ILTRLKQKQE EWFRCRSDFN KVWAEIYAKN YHKSLDHRSF YFKQQDSKSL STKALLAEIK DINDKMKKED DVLLAIAGRN RRPIVPTMEF
0701: EYIDMDIHED LYRIIKYSCG EVCTFSDQFD KVMKIWTTIL EPLFGVQPRN QGVKSLQDVK PKSHAVKTIM PGLGESNGNP GAYNTKQCNG DQNIPSEQAP
0801: SFTTKSADGD TTVTENGFYD TIQATNCGEN ICSSPLQGRV QCCASVADEM PEITVPDSVA GRAEQSHNKI SQEIASGVSC GSIGTGHCGT ETLVEARATN
0901: ENLPYSEGGQ TGLQIISING GSITESNKYY RPNDVFVSLN NLKVEREEGE LSPNGDLDED NCVALEDAAT NASCGEDAGD NGSVAAADDE CEESAQRSTE
1001: VSGNASEAGE DVSSSESGDG EECSHEDQEE EDDAEHDDQD AKAISEGKAD AHDAEGELFL HTVKPLARHV PAALHAEQDK SSRIFYGNDS YYVLFRLHQT
1101: LYERILSAKT NSSASEKKWK SSKDTSPPDL YAKFMSALFN LLDGSADNTK FEDDCRGIIG TQSYVLFTMD KLIYKIVKQL QAIASDETDN KLLQLYLYEK
1201: SRQTGRSFDL VYHENACVLH DESIYRFEFF SQTSDVTQLS IQLLEHGHVN PEAAAVSVDP NFSSYLYSDF LSSVLVRKGA QGVFLGRNKR KYGDDNEHSV
1301: VGKAMDGIQV INGLECKISS CSSKVSYVLD TEDILFRARN KRRCSGGTIC HDHSQPSQVH DAKVQRFNNL LSTFLSRT
0001: MVGGSSAQKL TTNDALAYLK AVKDKFQDKR DKYDEFLEVM KDFKAQRVDT TGVILRVKEL FKGNRELILG FNTFLPKGFE ITLRPEDDQP AAPKKPVEFE
0101: EAISFVNKIK TRFQGDDRVY KSFLDILNMY RKENKSITEV YHEVAILFRD HHDLLGEFTH FLPDTSATAS TNDSVKVPVR DRGIKSLPTM RQIDLDKKDR
0201: IITSHPNRAL KTENMDVDHE RSLLKDSKEE VRRIDKKNDF MDDRDRKDYR GLDHDSHKEH FFNSKKKLIR KDDDSAEMSD QAREGDKFSG AIPSSSTYDE
0301: KGHSQELAFV DRVKAKLDTA DNQEFLRCLN LYSKEIISQP ELQSLVSDLI GVYPDLMDAF KVFLAQCDKN DGLLSGIVSK KSLWSEGKCP QPTKSLDKDT
0401: DREREKIERY RERDREKERL EKVAASQKWA KPISELDLSN CEQCTPSYRR LPKNYPIPIA SQKMEIGSQV LNDHWVSVTS GSEDYSFKHM RKNQYEESLF
0501: KCEDDRFELD MLLESVISAT NRVEELLAKI NSNELKTDTP ICIEDHLTAL NLRCIERLYS DHGLDVLDLL KKNAYLALPV ILTRLKQKQE EWARCRTEFN
0601: KVWADIYTKN YHRSLDHRSF YFKQQDSKNL STKALLAEIK EISEKKRGED DALLALAAGN RRTISSNMSF DYPDPDLHED LYQLIKYSCG EMCSTEQLDK
0701: VMKVWTEFLE PIFGVPSRPQ GAEDREDAVK STNHDREDQE DAVSPQNGAS IANSMRSNGP RKVNESNQVR QASELDKDVT SSKTSDALLS CDNTQNDKMP
0801: KNLTTPDERA ETKQAVSIER AHNSNALPLD GLLPQRNGKI SSLSVAGLSN SNPKPALTSG TEELKPNYVN GPRVEIGDNP VIPNGTVAEW FAGEAKVERE
0901: EGELSPTGDF EEDNYAVHGE NDMEALSKSK ENDATADDAS APRSSDGSGN TSHNGDVSGT DSGDGEDCYR EDDIDHNKVE SEGEAEEGMS DGHDDTEGDM
1001: PVLSISVKNL LHVKPLAKYV PPALYDKDND DSRKNSQVFY GNDSFYVLFR LHQILYDRIL SAKINSSSPD RKWKTSNPTN PADSYARIMD ALYNLLDGTS
1101: DNSKFEDDCR AIIGTQSYVL FTLDKLIYKL IKHLQAVAAD EMDNKLQQLY AYEKSRKPEK FLDAVYYENA LVLLPDEDIY RIECEQSTPS KLSIQLLDYG
1201: HDKPDVTSIS MDPTFAAYLH NVFLSYQPNA KENPRIYLKR NKRKNGGDDE LCTTDEVKII NGLECKITCS SSKVSYVLDT EDVLHRAKRR KLLNQSGLPL
1301: AHDSVCSGSL IRQRRTQRYQ KLLTGQ
0101: EAISFVNKIK TRFQGDDRVY KSFLDILNMY RKENKSITEV YHEVAILFRD HHDLLGEFTH FLPDTSATAS TNDSVKVPVR DRGIKSLPTM RQIDLDKKDR
0201: IITSHPNRAL KTENMDVDHE RSLLKDSKEE VRRIDKKNDF MDDRDRKDYR GLDHDSHKEH FFNSKKKLIR KDDDSAEMSD QAREGDKFSG AIPSSSTYDE
0301: KGHSQELAFV DRVKAKLDTA DNQEFLRCLN LYSKEIISQP ELQSLVSDLI GVYPDLMDAF KVFLAQCDKN DGLLSGIVSK KSLWSEGKCP QPTKSLDKDT
0401: DREREKIERY RERDREKERL EKVAASQKWA KPISELDLSN CEQCTPSYRR LPKNYPIPIA SQKMEIGSQV LNDHWVSVTS GSEDYSFKHM RKNQYEESLF
0501: KCEDDRFELD MLLESVISAT NRVEELLAKI NSNELKTDTP ICIEDHLTAL NLRCIERLYS DHGLDVLDLL KKNAYLALPV ILTRLKQKQE EWARCRTEFN
0601: KVWADIYTKN YHRSLDHRSF YFKQQDSKNL STKALLAEIK EISEKKRGED DALLALAAGN RRTISSNMSF DYPDPDLHED LYQLIKYSCG EMCSTEQLDK
0701: VMKVWTEFLE PIFGVPSRPQ GAEDREDAVK STNHDREDQE DAVSPQNGAS IANSMRSNGP RKVNESNQVR QASELDKDVT SSKTSDALLS CDNTQNDKMP
0801: KNLTTPDERA ETKQAVSIER AHNSNALPLD GLLPQRNGKI SSLSVAGLSN SNPKPALTSG TEELKPNYVN GPRVEIGDNP VIPNGTVAEW FAGEAKVERE
0901: EGELSPTGDF EEDNYAVHGE NDMEALSKSK ENDATADDAS APRSSDGSGN TSHNGDVSGT DSGDGEDCYR EDDIDHNKVE SEGEAEEGMS DGHDDTEGDM
1001: PVLSISVKNL LHVKPLAKYV PPALYDKDND DSRKNSQVFY GNDSFYVLFR LHQILYDRIL SAKINSSSPD RKWKTSNPTN PADSYARIMD ALYNLLDGTS
1101: DNSKFEDDCR AIIGTQSYVL FTLDKLIYKL IKHLQAVAAD EMDNKLQQLY AYEKSRKPEK FLDAVYYENA LVLLPDEDIY RIECEQSTPS KLSIQLLDYG
1201: HDKPDVTSIS MDPTFAAYLH NVFLSYQPNA KENPRIYLKR NKRKNGGDDE LCTTDEVKII NGLECKITCS SSKVSYVLDT EDVLHRAKRR KLLNQSGLPL
1301: AHDSVCSGSL IRQRRTQRYQ KLLTGQ
Arabidopsis Description
SNL4Paired amphipathic helix protein Sin3-like 4 [Source:UniProtKB/Swiss-Prot;Acc:O04539]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.