Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr1P20690_001 | Banana | nucleus | 81.02 | 84.34 |
| GSMUA_Achr2P09580_001 | Banana | nucleus | 73.85 | 75.7 |
| GSMUA_Achr11P... | Banana | nucleus | 73.85 | 74.82 |
| EES00449 | Sorghum | nucleus | 67.77 | 65.65 |
| Zm00001d008429_P019 | Maize | nucleus | 67.05 | 64.86 |
| Os01t0109700-01 | Rice | nucleus | 61.46 | 64.71 |
| Zm00001d040123_P007 | Maize | nucleus | 66.33 | 64.53 |
| TraesCS1B01G002000.1 | Wheat | nucleus | 59.1 | 63.61 |
| VIT_01s0026g01010.t01 | Wine grape | nucleus | 65.97 | 63.47 |
| HORVU1Hr1G000290.3 | Barley | nucleus | 60.39 | 63.34 |
| TraesCS1A01G002700.1 | Wheat | nucleus | 59.89 | 62.76 |
| TraesCS1D01G004900.4 | Wheat | nucleus | 60.24 | 62.53 |
| Os05t0100500-01 | Rice | plastid | 16.4 | 62.23 |
| TraesCSU01G039900.1 | Wheat | nucleus | 62.25 | 60.81 |
| CDY23529 | Canola | cytosol | 6.88 | 60.76 |
| KRH69432 | Soybean | nucleus | 62.18 | 60.7 |
| TraesCS3B01G005900.1 | Wheat | nucleus | 62.18 | 60.53 |
| KRH74716 | Soybean | nucleus | 56.66 | 60.15 |
| TraesCS3D01G007600.2 | Wheat | nucleus, plastid | 59.31 | 60.04 |
| CDY48380 | Canola | cytosol | 6.73 | 59.49 |
| AT1G70030.1 | Thale cress | cytosol | 6.66 | 58.12 |
| KXG20992 | Sorghum | nucleus | 51.58 | 57.69 |
| Zm00001d035776_P004 | Maize | nucleus | 50.86 | 56.3 |
| HORVU3Hr1G000540.2 | Barley | plastid | 61.96 | 56.13 |
| AT1G24200.1 | Thale cress | cytosol | 7.81 | 55.61 |
| CDY48381 | Canola | cytosol | 6.16 | 55.48 |
| CDY23528 | Canola | cytosol | 6.16 | 55.48 |
| Bra003968.1-P | Field mustard | cytosol | 6.16 | 55.48 |
| CDY11625 | Canola | nucleus | 50.07 | 54.19 |
| CDY38781 | Canola | nucleus | 49.79 | 53.92 |
| Bra016241.1-P | Field mustard | nucleus | 49.71 | 53.84 |
| CDX68358 | Canola | nucleus | 49.07 | 53.35 |
| CDY23527 | Canola | nucleus | 49.0 | 52.86 |
| AT1G70060.2 | Thale cress | nucleus | 49.79 | 52.41 |
| AT1G24190.3 | Thale cress | nucleus | 50.07 | 52.24 |
| Bra003967.1-P | Field mustard | nucleus | 49.14 | 52.17 |
| GSMUA_AchrUn_... | Banana | cytosol | 12.68 | 43.38 |
| GSMUA_AchrUn_... | Banana | nucleus | 8.95 | 37.43 |
| Zm00001d041450_P002 | Maize | nucleus | 19.2 | 34.1 |
| Zm00001d041453_P001 | Maize | nucleus | 22.56 | 27.27 |
| GSMUA_Achr7P17160_001 | Banana | nucleus | 20.7 | 26.39 |
Protein Annotations
| Gene3D:1.20.1160.11 | MapMan:12.3.2.4.2 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| EnsemblPlantsGene:GSMUA_Achr9G00800_001 | EnsemblPlants:GSMUA_Achr9P00800_001 | EnsemblPlants:GSMUA_Achr9T00800_001 | InterPro:HDAC_interact_dom | InterPro:IPR003822 | UniProt:M0TWD7 |
| InterPro:PAH | InterPro:PAH_sf | PFAM:PF02671 | PFAM:PF08295 | PFAM:PF16879 | PFscan:PS51477 |
| PANTHER:PTHR12346 | PANTHER:PTHR12346:SF21 | SMART:SM00761 | SUPFAM:SSF47762 | InterPro:Sin3_C | UniParc:UPI00029695B1 |
| SEG:seg | : | : | : | : | : |
Description
Paired amphipathic helix protein Sin3-like 4 [Source:GMGC_GENE;Acc:GSMUA_Achr9G00800_001]
Coordinates
chr9:-:591437..600672
Molecular Weight (calculated)
158936.0 Da
IEP (calculated)
5.380
GRAVY (calculated)
-0.815
Length
1396 amino acids
Sequence
(BLAST)
(BLAST)
0001: MKGAPEEALM GSQLKRPNVP RVDPSMQTHM APASAASNTP KLTTNDALAY LKAVKDIFQD KREKYDEFLE VMKDFKSQRI DTNGVIMRVK ELFKGHRDLI
0101: LGFNTFLPKG YEIKLPEEKK PVEFEEAINF VNKIKNRFQN DDHVYKSFLD ILNMYRRENK SIHEVYQEVA ALFQNHHDLL EEFTHFLPDA SATYAPHHAY
0201: SGRGFVQRDD RSSLMPTARH IQGDKVHLQE RSYTSHADRD FSVDHPDTEH DRQRRHAERE KDRKEDRDKR DRERDEKDIE HDSGDLDEAN RRHKFQSGRM
0301: DDSVAEPKQQ RGDCTENIGT YSISVSSSDD KNALKSVYTR EFNFCEKVKE KLHPDTYQEF LKCLHIYSKE IINRTELKNL VSDILGKHLD LMEGFNEFLA
0401: HCENIDGFLE GVFNKRHTAR PIKIEDRDRE RERDVDEQKD SERERNNERE RVDKGALYNS KEGASHKATF FSNKEKYNLW KPISELDLSN CQRCTPSYRL
0501: LPKNYPIPPA SHRTELGVSV LNDVWVSVTS GSEDYSFKHM RKNQYEESLF RCEDDRFELD MLLESVNVTT KRVEELLEMT QDPVKSENLI RIGDHLSSLN
0601: LRCIERLYGD HGLDVMDVLH KNAGLALPVI LTRLKQKQEE WSRCRSDFNK VWAEIYAKNY HKSLDHRCFY FKQQDTKSLS TKALLAEIKE INDKMKEEDD
0701: ILLAVAARNR RPILPNMEFE YVDVDIHEDL YQIIKYSCGE VCTSLEQVDK VMKIWTTFLE PLMCVRSRNQ GEEDAQDAKP KNRAVKTSMV GVGENNRSSG
0801: VDCAGATRQN NGRGQGSAPM ADEVSGINGQ YVSAEPLQDN IYVAGGAEQS QNRTNLEIIS GANSASLRTG HFGMETVVET RATNEILPSS EGGQTGRPIV
0901: SANGASTTEN NKGHRPNEGS ASLNNLKVER EEGELSPTGD FGEDNFVTFG DAAINVAPKG KDTSASRQFQ VRPGEVEASC GEAAGEHDAD ADDEGEESAQ
1001: RSTEVSENAS EAGEDVSGSE SGDGGECSRE DHEEEEDDAE NDQDGKAESE GEAEGTTDTH DAEGEITSLP FSERILHTVK PLARHVPAAL HNKEDKCSRI
1101: FYGNDSFYVL FRLHQTLYER ILSAKTNSSA AEKKWRSSKD TTPPDLYAKF ISALYHLLDG SADNTKFEDD CRTIIGTQSY LLFTLDKLIY KVVKQLQAMA
1201: SDEIDNKLLQ LSLYEKSRRS GRSSDLVYHE NIRVLLHDEN IYRFECFSQS SYVTRLSIQL MEYGHEKPEA TAVSMDPSFS AYLYSDFLSS IPDKKGAEGV
1301: FLRRNKRKYG DDDEYASTYK AMSRFQVING LECKISCSSS KVSYVLDTED FLFRGRKKRI YSCGGTNICG QAQPSQAHDA KVEQFHRILS SFLSRS
0101: LGFNTFLPKG YEIKLPEEKK PVEFEEAINF VNKIKNRFQN DDHVYKSFLD ILNMYRRENK SIHEVYQEVA ALFQNHHDLL EEFTHFLPDA SATYAPHHAY
0201: SGRGFVQRDD RSSLMPTARH IQGDKVHLQE RSYTSHADRD FSVDHPDTEH DRQRRHAERE KDRKEDRDKR DRERDEKDIE HDSGDLDEAN RRHKFQSGRM
0301: DDSVAEPKQQ RGDCTENIGT YSISVSSSDD KNALKSVYTR EFNFCEKVKE KLHPDTYQEF LKCLHIYSKE IINRTELKNL VSDILGKHLD LMEGFNEFLA
0401: HCENIDGFLE GVFNKRHTAR PIKIEDRDRE RERDVDEQKD SERERNNERE RVDKGALYNS KEGASHKATF FSNKEKYNLW KPISELDLSN CQRCTPSYRL
0501: LPKNYPIPPA SHRTELGVSV LNDVWVSVTS GSEDYSFKHM RKNQYEESLF RCEDDRFELD MLLESVNVTT KRVEELLEMT QDPVKSENLI RIGDHLSSLN
0601: LRCIERLYGD HGLDVMDVLH KNAGLALPVI LTRLKQKQEE WSRCRSDFNK VWAEIYAKNY HKSLDHRCFY FKQQDTKSLS TKALLAEIKE INDKMKEEDD
0701: ILLAVAARNR RPILPNMEFE YVDVDIHEDL YQIIKYSCGE VCTSLEQVDK VMKIWTTFLE PLMCVRSRNQ GEEDAQDAKP KNRAVKTSMV GVGENNRSSG
0801: VDCAGATRQN NGRGQGSAPM ADEVSGINGQ YVSAEPLQDN IYVAGGAEQS QNRTNLEIIS GANSASLRTG HFGMETVVET RATNEILPSS EGGQTGRPIV
0901: SANGASTTEN NKGHRPNEGS ASLNNLKVER EEGELSPTGD FGEDNFVTFG DAAINVAPKG KDTSASRQFQ VRPGEVEASC GEAAGEHDAD ADDEGEESAQ
1001: RSTEVSENAS EAGEDVSGSE SGDGGECSRE DHEEEEDDAE NDQDGKAESE GEAEGTTDTH DAEGEITSLP FSERILHTVK PLARHVPAAL HNKEDKCSRI
1101: FYGNDSFYVL FRLHQTLYER ILSAKTNSSA AEKKWRSSKD TTPPDLYAKF ISALYHLLDG SADNTKFEDD CRTIIGTQSY LLFTLDKLIY KVVKQLQAMA
1201: SDEIDNKLLQ LSLYEKSRRS GRSSDLVYHE NIRVLLHDEN IYRFECFSQS SYVTRLSIQL MEYGHEKPEA TAVSMDPSFS AYLYSDFLSS IPDKKGAEGV
1301: FLRRNKRKYG DDDEYASTYK AMSRFQVING LECKISCSSS KVSYVLDTED FLFRGRKKRI YSCGGTNICG QAQPSQAHDA KVEQFHRILS SFLSRS
0001: MVGGSSAQKL TTNDALAYLK AVKDKFQDKR DKYDEFLEVM KDFKAQRVDT TGVILRVKEL FKGNRELILG FNTFLPKGFE ITLRPEDDQP AAPKKPVEFE
0101: EAISFVNKIK TRFQGDDRVY KSFLDILNMY RKENKSITEV YHEVAILFRD HHDLLGEFTH FLPDTSATAS TNDSVKVPVR DRGIKSLPTM RQIDLDKKDR
0201: IITSHPNRAL KTENMDVDHE RSLLKDSKEE VRRIDKKNDF MDDRDRKDYR GLDHDSHKEH FFNSKKKLIR KDDDSAEMSD QAREGDKFSG AIPSSSTYDE
0301: KGHSQELAFV DRVKAKLDTA DNQEFLRCLN LYSKEIISQP ELQSLVSDLI GVYPDLMDAF KVFLAQCDKN DGLLSGIVSK KSLWSEGKCP QPTKSLDKDT
0401: DREREKIERY RERDREKERL EKVAASQKWA KPISELDLSN CEQCTPSYRR LPKNYPIPIA SQKMEIGSQV LNDHWVSVTS GSEDYSFKHM RKNQYEESLF
0501: KCEDDRFELD MLLESVISAT NRVEELLAKI NSNELKTDTP ICIEDHLTAL NLRCIERLYS DHGLDVLDLL KKNAYLALPV ILTRLKQKQE EWARCRTEFN
0601: KVWADIYTKN YHRSLDHRSF YFKQQDSKNL STKALLAEIK EISEKKRGED DALLALAAGN RRTISSNMSF DYPDPDLHED LYQLIKYSCG EMCSTEQLDK
0701: VMKVWTEFLE PIFGVPSRPQ GAEDREDAVK STNHDREDQE DAVSPQNGAS IANSMRSNGP RKVNESNQVR QASELDKDVT SSKTSDALLS CDNTQNDKMP
0801: KNLTTPDERA ETKQAVSIER AHNSNALPLD GLLPQRNGKI SSLSVAGLSN SNPKPALTSG TEELKPNYVN GPRVEIGDNP VIPNGTVAEW FAGEAKVERE
0901: EGELSPTGDF EEDNYAVHGE NDMEALSKSK ENDATADDAS APRSSDGSGN TSHNGDVSGT DSGDGEDCYR EDDIDHNKVE SEGEAEEGMS DGHDDTEGDM
1001: PVLSISVKNL LHVKPLAKYV PPALYDKDND DSRKNSQVFY GNDSFYVLFR LHQILYDRIL SAKINSSSPD RKWKTSNPTN PADSYARIMD ALYNLLDGTS
1101: DNSKFEDDCR AIIGTQSYVL FTLDKLIYKL IKHLQAVAAD EMDNKLQQLY AYEKSRKPEK FLDAVYYENA LVLLPDEDIY RIECEQSTPS KLSIQLLDYG
1201: HDKPDVTSIS MDPTFAAYLH NVFLSYQPNA KENPRIYLKR NKRKNGGDDE LCTTDEVKII NGLECKITCS SSKVSYVLDT EDVLHRAKRR KLLNQSGLPL
1301: AHDSVCSGSL IRQRRTQRYQ KLLTGQ
0101: EAISFVNKIK TRFQGDDRVY KSFLDILNMY RKENKSITEV YHEVAILFRD HHDLLGEFTH FLPDTSATAS TNDSVKVPVR DRGIKSLPTM RQIDLDKKDR
0201: IITSHPNRAL KTENMDVDHE RSLLKDSKEE VRRIDKKNDF MDDRDRKDYR GLDHDSHKEH FFNSKKKLIR KDDDSAEMSD QAREGDKFSG AIPSSSTYDE
0301: KGHSQELAFV DRVKAKLDTA DNQEFLRCLN LYSKEIISQP ELQSLVSDLI GVYPDLMDAF KVFLAQCDKN DGLLSGIVSK KSLWSEGKCP QPTKSLDKDT
0401: DREREKIERY RERDREKERL EKVAASQKWA KPISELDLSN CEQCTPSYRR LPKNYPIPIA SQKMEIGSQV LNDHWVSVTS GSEDYSFKHM RKNQYEESLF
0501: KCEDDRFELD MLLESVISAT NRVEELLAKI NSNELKTDTP ICIEDHLTAL NLRCIERLYS DHGLDVLDLL KKNAYLALPV ILTRLKQKQE EWARCRTEFN
0601: KVWADIYTKN YHRSLDHRSF YFKQQDSKNL STKALLAEIK EISEKKRGED DALLALAAGN RRTISSNMSF DYPDPDLHED LYQLIKYSCG EMCSTEQLDK
0701: VMKVWTEFLE PIFGVPSRPQ GAEDREDAVK STNHDREDQE DAVSPQNGAS IANSMRSNGP RKVNESNQVR QASELDKDVT SSKTSDALLS CDNTQNDKMP
0801: KNLTTPDERA ETKQAVSIER AHNSNALPLD GLLPQRNGKI SSLSVAGLSN SNPKPALTSG TEELKPNYVN GPRVEIGDNP VIPNGTVAEW FAGEAKVERE
0901: EGELSPTGDF EEDNYAVHGE NDMEALSKSK ENDATADDAS APRSSDGSGN TSHNGDVSGT DSGDGEDCYR EDDIDHNKVE SEGEAEEGMS DGHDDTEGDM
1001: PVLSISVKNL LHVKPLAKYV PPALYDKDND DSRKNSQVFY GNDSFYVLFR LHQILYDRIL SAKINSSSPD RKWKTSNPTN PADSYARIMD ALYNLLDGTS
1101: DNSKFEDDCR AIIGTQSYVL FTLDKLIYKL IKHLQAVAAD EMDNKLQQLY AYEKSRKPEK FLDAVYYENA LVLLPDEDIY RIECEQSTPS KLSIQLLDYG
1201: HDKPDVTSIS MDPTFAAYLH NVFLSYQPNA KENPRIYLKR NKRKNGGDDE LCTTDEVKII NGLECKITCS SSKVSYVLDT EDVLHRAKRR KLLNQSGLPL
1301: AHDSVCSGSL IRQRRTQRYQ KLLTGQ
Arabidopsis Description
SNL4Paired amphipathic helix protein Sin3-like 4 [Source:UniProtKB/Swiss-Prot;Acc:O04539]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.