Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 2
- nucleus 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCSU01G039900.1 | Wheat | nucleus | 96.3 | 92.93 |
| TraesCS3B01G005900.1 | Wheat | nucleus | 95.87 | 92.19 |
| HORVU3Hr1G000540.2 | Barley | plastid | 92.6 | 82.87 |
| Os01t0109700-01 | Rice | nucleus | 71.5 | 74.36 |
| EES00449 | Sorghum | nucleus | 77.52 | 74.18 |
| Zm00001d040123_P007 | Maize | nucleus | 76.36 | 73.38 |
| Zm00001d008429_P019 | Maize | nucleus | 76.14 | 72.77 |
| TraesCS1D01G004900.4 | Wheat | nucleus | 64.1 | 65.72 |
| GSMUA_Achr1P20690_001 | Banana | nucleus | 59.54 | 61.22 |
| GSMUA_Achr9P00800_001 | Banana | nucleus | 60.04 | 59.31 |
| CDY23529 | Canola | cytosol | 6.74 | 58.86 |
| CDY48380 | Canola | cytosol | 6.6 | 57.59 |
| GSMUA_Achr2P09580_001 | Banana | nucleus | 55.98 | 56.68 |
| GSMUA_Achr11P... | Banana | nucleus | 56.64 | 56.68 |
| VIT_01s0026g01010.t01 | Wine grape | nucleus | 59.61 | 56.65 |
| AT1G70030.1 | Thale cress | cytosol | 6.31 | 54.38 |
| AT1G24200.1 | Thale cress | cytosol | 7.69 | 54.08 |
| CDY48381 | Canola | cytosol | 5.95 | 52.9 |
| CDY23528 | Canola | cytosol | 5.95 | 52.9 |
| Bra003968.1-P | Field mustard | cytosol | 5.95 | 52.9 |
| KRH69432 | Soybean | nucleus | 54.82 | 52.87 |
| KRH74716 | Soybean | nucleus | 50.04 | 52.47 |
| CDY11625 | Canola | nucleus | 46.77 | 50.0 |
| CDY38781 | Canola | nucleus | 46.7 | 49.96 |
| Bra016241.1-P | Field mustard | nucleus | 46.63 | 49.88 |
| AT1G70060.2 | Thale cress | nucleus | 47.64 | 49.55 |
| AT1G24190.3 | Thale cress | nucleus | 47.86 | 49.33 |
| CDX68358 | Canola | nucleus | 45.83 | 49.22 |
| CDY23527 | Canola | nucleus | 46.12 | 49.15 |
| Bra003967.1-P | Field mustard | nucleus | 45.76 | 47.98 |
| TraesCS3D01G007000.1 | Wheat | cytosol | 4.93 | 36.17 |
| TraesCS1D01G438700.1 | Wheat | cytosol | 11.31 | 31.26 |
| TraesCS1D01G438600.1 | Wheat | nucleus | 14.21 | 25.13 |
Protein Annotations
| Gene3D:1.20.1160.11 | MapMan:12.3.2.4.2 | ncoils:Coil | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:HDAC_interact_dom | InterPro:IPR003822 | InterPro:PAH |
| InterPro:PAH_sf | PFAM:PF02671 | PFAM:PF08295 | PFAM:PF16879 | PFscan:PS51477 | PANTHER:PTHR12346 |
| PANTHER:PTHR12346:SF21 | SMART:SM00761 | SUPFAM:SSF47762 | InterPro:Sin3_C | EnsemblPlantsGene:TraesCS3D01G007600 | EnsemblPlants:TraesCS3D01G007600.2 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr3D:+:2619817..2627172
Molecular Weight (calculated)
154166.0 Da
IEP (calculated)
5.866
GRAVY (calculated)
-0.780
Length
1379 amino acids
Sequence
(BLAST)
(BLAST)
0001: MKRSREDALA AAGSQPSKRI STSSAAAAVA RSDPSPPQPM PPAGSGSALV PAPPPQAVAA LPAQPSGGSG AATAAAAAAA GQKLTTNDAL VYLKAVKDKF
0101: QDNRAKYEEF LEVMRDFKSE RIDTNGVIIR VKTLFNGYPE LILGFNTFLP KGFAIRLQQD EKKPVDFAEA INFVNKIKSR FQRDEHVYKS FLDILNMYRK
0201: DNKSIQDVYH EVAVLFSDHK DLLEEFQHFL PDTSASPQAG TAPRGGLVKR EALMPPASRG HIEKPRAFPS HTDRDASVDR PDVDHDRQRQ REKNKERKAE
0301: RERRDYDRDD KDGEQDSKEL DVGQRKRKPF PSANLVGAEA HQGGHPEIHG INSASASSYD NKDALKSGYT QEFHFCEKVK DKLEYDAYQE FLKCLHIYSQ
0401: EIITRSELKN LVSDILQHYP DLMDGFNEFL EHCENIDGFL AGVFSKKQPG RLIKTEDKER DKEHEREDRN RDRDKEREKE RERLHPKEGS SQKPSVVKEK
0501: YLCKPISELD LSNCQRCTPS YRLLPKNYPM PPAGNKTDLG ASVLNDHWVS VTSGSEDYSF KHMRKNQYEE SLFRCEDDRF ELDMLLESVN AATKRVEELI
0601: EKMQDNSVKP ESPIRIDEHL TPLNLRCIER LYGDHGLDVM DVLRRNASVA LPVILSRLKQ KQEEWSRCRS DFNKVWADIY AKNYHKSLDH RSFYFKQQDS
0701: KNLSTKSLLT EIKEINEKKR KEDDVLIAIA AGNRRPIVPN MSFEYVDANI HDDLYKIVKY SCGEVCGSDQ LDKVMKIWTT FLEPILGIPP RSHGTVDADL
0801: TKPKNGITKS GTAIMGESNT SPDGVAAQQG HGDESMQQEQ APSAVARLSR LAKGVAADSQ NGSHDADRTA RRDEEASNAA LNEVSAVSTQ NMPTGRPAGQ
0901: HSHMKGNSET TPGVNASKSS HAGVSMAAGA RAGHEVLPST EGGETGKSGS SLNCGATSEG NKGRLFNEAA APHNTSKVER EEGELSPNGD FEEDNFVPFE
1001: DGASKTKEGS TSRTFKVRPG QVEPHAEAAG ENDADDEEST QRSTEDSENA SEAGEDASGS ESGDGEHGSP EDHDEEEDMD HDQDPKAESE GEAEGTTETH
1101: DVEGGMSLLG ISLPSSERFL YSAKPLAKHV PTSLHGREDR SSHIFYGNDS FYILFRLHQM LYERLLSAKT NSSSAEKKWR TSKDTNPPDL YARFIKALYN
1201: LLDGTSDNTK FEDDCRAIIG TQSYVLFTLD KLIYKVVKQL QAIATDEMDS KLLQLYMYEK SRSPGRFFDL VYHENARVLL HDESMYRFEC RSSPMRLSIQ
1301: LMEYGHEKPE VTAVSIEPNF ASYLFSEYLS NSSGTMLPEG VFLGRPWMVS KLLMVLNARY PARPLRSPMS LTPKISCFG
0101: QDNRAKYEEF LEVMRDFKSE RIDTNGVIIR VKTLFNGYPE LILGFNTFLP KGFAIRLQQD EKKPVDFAEA INFVNKIKSR FQRDEHVYKS FLDILNMYRK
0201: DNKSIQDVYH EVAVLFSDHK DLLEEFQHFL PDTSASPQAG TAPRGGLVKR EALMPPASRG HIEKPRAFPS HTDRDASVDR PDVDHDRQRQ REKNKERKAE
0301: RERRDYDRDD KDGEQDSKEL DVGQRKRKPF PSANLVGAEA HQGGHPEIHG INSASASSYD NKDALKSGYT QEFHFCEKVK DKLEYDAYQE FLKCLHIYSQ
0401: EIITRSELKN LVSDILQHYP DLMDGFNEFL EHCENIDGFL AGVFSKKQPG RLIKTEDKER DKEHEREDRN RDRDKEREKE RERLHPKEGS SQKPSVVKEK
0501: YLCKPISELD LSNCQRCTPS YRLLPKNYPM PPAGNKTDLG ASVLNDHWVS VTSGSEDYSF KHMRKNQYEE SLFRCEDDRF ELDMLLESVN AATKRVEELI
0601: EKMQDNSVKP ESPIRIDEHL TPLNLRCIER LYGDHGLDVM DVLRRNASVA LPVILSRLKQ KQEEWSRCRS DFNKVWADIY AKNYHKSLDH RSFYFKQQDS
0701: KNLSTKSLLT EIKEINEKKR KEDDVLIAIA AGNRRPIVPN MSFEYVDANI HDDLYKIVKY SCGEVCGSDQ LDKVMKIWTT FLEPILGIPP RSHGTVDADL
0801: TKPKNGITKS GTAIMGESNT SPDGVAAQQG HGDESMQQEQ APSAVARLSR LAKGVAADSQ NGSHDADRTA RRDEEASNAA LNEVSAVSTQ NMPTGRPAGQ
0901: HSHMKGNSET TPGVNASKSS HAGVSMAAGA RAGHEVLPST EGGETGKSGS SLNCGATSEG NKGRLFNEAA APHNTSKVER EEGELSPNGD FEEDNFVPFE
1001: DGASKTKEGS TSRTFKVRPG QVEPHAEAAG ENDADDEEST QRSTEDSENA SEAGEDASGS ESGDGEHGSP EDHDEEEDMD HDQDPKAESE GEAEGTTETH
1101: DVEGGMSLLG ISLPSSERFL YSAKPLAKHV PTSLHGREDR SSHIFYGNDS FYILFRLHQM LYERLLSAKT NSSSAEKKWR TSKDTNPPDL YARFIKALYN
1201: LLDGTSDNTK FEDDCRAIIG TQSYVLFTLD KLIYKVVKQL QAIATDEMDS KLLQLYMYEK SRSPGRFFDL VYHENARVLL HDESMYRFEC RSSPMRLSIQ
1301: LMEYGHEKPE VTAVSIEPNF ASYLFSEYLS NSSGTMLPEG VFLGRPWMVS KLLMVLNARY PARPLRSPMS LTPKISCFG
0001: MVGGGSAQKL TTNDALAYLK AVKDKFQDQR GKYDEFLEVM KNFKSQRVDT AGVITRVKEL FKGHQELILG FNTFLPKGFE ITLQPEDGQP PLKKRVEFEE
0101: AISFVNKIKT RFQGDDRVYK SFLDILNMYR RDSKSITEVY QEVAILFRDH SDLLVEFTHF LPDTSATASI PSVKTSVRER GVSLADKKDR IITPHPDHDY
0201: GTEHIDQDRE RPIKKENKEH MRGTNKENEH RDARDFEPHS KKEQFLNKKQ KLHIRGDDPA EISNQSKLSG AVPSSSTYDE KGAMKSYSQD LAIVDRVKEK
0301: LNASEYQEFL RCLNLFSKEI ISRPELQSLV GNLIGVYPDL MDSFIEFLVQ CEKNEGLLSG ILTKSKSTYL LQGEGKYPQP SLDNDRDQEH KRDDGLRDRD
0401: HEKERLEKAA ANLKWAKPIS ELDLSNCEQC TPSYRLLPKN YPISIASQKT EIGKLVLNDH WVSVTSGSED YSFSHMRKNQ YEESLFKCED DRFELDMLLE
0501: SVNSTTKHVE ELLTKINSNE LKTNSPIRVE DHLTALNLRC IERLYGDHGL DVMDVLKKNV SLALPVILTR LKQKQEEWAR CRSDFDKVWA EIYAKNYYKS
0601: LDHRSFYFKQ QDSKKLSMKA LLAEIKEITE KKREDDSLLA FAAGNRLSIS PDLEFDYPDH DLHEDLYQLI KYSCAEMCST EQLDKVMKIW TTFVEQIFGV
0701: PSRPQGAEDQ EDVVKSMNQN VKSGSSSAGE SEGSPHNYAS VADSRRSKSS RKANEHSQLG QTSNSERDGA AGRTSDALCE TAQHEKMLKN VVTSDEKPES
0801: KQAVSIERAH DSTALAVDGL LDQSNGGSSI VHMTGHCNNN LKPVTCGTEL ELKMNDGNGP KLEVGNKKLL TNGIAVEITS DQEMAGTSKV EREEGELSPN
0901: GDFEEDNFAV YAKTDFETFS KANDSTGNNI SGDRSREGEP SCLETRAEND AEGDENAARS SEDSRNEYEN GDVSGTESGG GEDPEDDLDN NNKGESEGEA
1001: ECMADAHDAE ENGSALPVSA RFLLHVKPLV KYVPSAIALH DKDKDSLKNS QVFYGNDSFY VLFRLHRILY ERILSAKVNS SSPEGKWRTS NTKNPTDSYA
1101: RFMTALYNLL DGTSDNAKFE DDCRAIIGTQ SYILFTLDKL IHKFIKHLQV VVADEMDNKL LQLYFYEKSR RPETIFDAVY YDNTRVLLPD ENIYRIECRL
1201: STPAKLSIQL MCNGLDKPDV TSVSIDPTFA AYLHNDFLSI QPNAREDRRI YLNRNKRKVC REDEQLYSTD EVKIKNGLEC KIACGSSKVS YVLETEDLLV
1301: RVKKRRKTLC HNQDSWVRQM RLQYYKNNFL
0101: AISFVNKIKT RFQGDDRVYK SFLDILNMYR RDSKSITEVY QEVAILFRDH SDLLVEFTHF LPDTSATASI PSVKTSVRER GVSLADKKDR IITPHPDHDY
0201: GTEHIDQDRE RPIKKENKEH MRGTNKENEH RDARDFEPHS KKEQFLNKKQ KLHIRGDDPA EISNQSKLSG AVPSSSTYDE KGAMKSYSQD LAIVDRVKEK
0301: LNASEYQEFL RCLNLFSKEI ISRPELQSLV GNLIGVYPDL MDSFIEFLVQ CEKNEGLLSG ILTKSKSTYL LQGEGKYPQP SLDNDRDQEH KRDDGLRDRD
0401: HEKERLEKAA ANLKWAKPIS ELDLSNCEQC TPSYRLLPKN YPISIASQKT EIGKLVLNDH WVSVTSGSED YSFSHMRKNQ YEESLFKCED DRFELDMLLE
0501: SVNSTTKHVE ELLTKINSNE LKTNSPIRVE DHLTALNLRC IERLYGDHGL DVMDVLKKNV SLALPVILTR LKQKQEEWAR CRSDFDKVWA EIYAKNYYKS
0601: LDHRSFYFKQ QDSKKLSMKA LLAEIKEITE KKREDDSLLA FAAGNRLSIS PDLEFDYPDH DLHEDLYQLI KYSCAEMCST EQLDKVMKIW TTFVEQIFGV
0701: PSRPQGAEDQ EDVVKSMNQN VKSGSSSAGE SEGSPHNYAS VADSRRSKSS RKANEHSQLG QTSNSERDGA AGRTSDALCE TAQHEKMLKN VVTSDEKPES
0801: KQAVSIERAH DSTALAVDGL LDQSNGGSSI VHMTGHCNNN LKPVTCGTEL ELKMNDGNGP KLEVGNKKLL TNGIAVEITS DQEMAGTSKV EREEGELSPN
0901: GDFEEDNFAV YAKTDFETFS KANDSTGNNI SGDRSREGEP SCLETRAEND AEGDENAARS SEDSRNEYEN GDVSGTESGG GEDPEDDLDN NNKGESEGEA
1001: ECMADAHDAE ENGSALPVSA RFLLHVKPLV KYVPSAIALH DKDKDSLKNS QVFYGNDSFY VLFRLHRILY ERILSAKVNS SSPEGKWRTS NTKNPTDSYA
1101: RFMTALYNLL DGTSDNAKFE DDCRAIIGTQ SYILFTLDKL IHKFIKHLQV VVADEMDNKL LQLYFYEKSR RPETIFDAVY YDNTRVLLPD ENIYRIECRL
1201: STPAKLSIQL MCNGLDKPDV TSVSIDPTFA AYLHNDFLSI QPNAREDRRI YLNRNKRKVC REDEQLYSTD EVKIKNGLEC KIACGSSKVS YVLETEDLLV
1301: RVKKRRKTLC HNQDSWVRQM RLQYYKNNFL
Arabidopsis Description
SNL3SIN3-like 3 [Source:TAIR;Acc:AT1G24190]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.