Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS1B01G463900.1 | Wheat | nucleus | 94.23 | 94.23 |
TraesCS1A01G429100.1 | Wheat | nucleus | 95.13 | 91.6 |
HORVU1Hr1G093490.1 | Barley | nucleus | 86.28 | 86.84 |
TraesCS1D01G438700.1 | Wheat | cytosol | 42.31 | 66.13 |
Zm00001d009729_P001 | Maize | nucleus | 13.08 | 41.63 |
Os05t0588700-01 | Rice | nucleus | 42.56 | 38.69 |
KXG22653 | Sorghum | nucleus | 41.41 | 38.59 |
GSMUA_AchrUn_... | Banana | cytosol | 12.82 | 24.51 |
CDY71516 | Canola | cytosol, mitochondrion, nucleus | 7.95 | 23.85 |
TraesCS3D01G007000.1 | Wheat | cytosol | 4.49 | 18.62 |
GSMUA_Achr7P17160_001 | Banana | nucleus | 22.44 | 15.98 |
GSMUA_AchrUn_... | Banana | nucleus | 6.79 | 15.87 |
TraesCS1D01G004900.4 | Wheat | nucleus | 25.77 | 14.94 |
TraesCS3D01G007600.2 | Wheat | nucleus, plastid | 25.13 | 14.21 |
Protein Annotations
Gene3D:1.20.1160.11 | MapMan:35.1 | ncoils:Coil | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:HDAC_interact_dom | InterPro:IPR003822 | InterPro:PAH |
InterPro:PAH_sf | PFAM:PF02671 | PFAM:PF08295 | PFAM:PF16879 | PFscan:PS51477 | PANTHER:PTHR12346 |
PANTHER:PTHR12346:SF10 | SMART:SM00761 | SUPFAM:SSF47762 | InterPro:Sin3_C | EnsemblPlantsGene:TraesCS1D01G438600 | EnsemblPlants:TraesCS1D01G438600.1 |
SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr1D:-:485436295..485440360
Molecular Weight (calculated)
88722.0 Da
IEP (calculated)
5.572
GRAVY (calculated)
-0.626
Length
780 amino acids
Sequence
(BLAST)
(BLAST)
001: MASPNEADDD NFGYKGGEKE YMLETMQCLL FARENLPGDV YHEFVKTMTG IWKKRADPDG EIRNICPENC IETALKLFQG CPTVKQSFLN FTEGRSPFDG
101: NGNVDAVAVN PLMQKPMDFL SRVKTCPNIS DDDYAAFLQT MQDFCRDRTM TPREVYSNVE RCMRNCPELL EEFIDNFLPA DLKALVKEND NHSLDGVHMK
201: EGNGVSPHTE EDEEDKVKPL PAWTTSRIDE LPPKLEPKEL KRHCTPSYYL LPDNCIPQLS YRTELGRSIL NDALICPVSE EESPNHKAAN EYEAKMLLCE
301: EDMFESDMLL QWFSVTADFI ANLQHRAGSD VKIKEQLTPL HRRCIIRLYG EEFLEALLDT DNASAALPVI LSRLNHSIVE LQEARLRLRK TRSEVMAKNY
401: YRALDHRGPS FKQLDAKRMS RKALLAEAKE INAMKPKAED QYANPDIHRD ISSIISSACA SEEKQMVTWT KIVHPFLSAH CAQPSSEETV APEKACEHCG
501: TRKDILNNNP DAFTDNNLPL SSKRGEFVSK NSKDFSSSHD GSGADIEEGE FIPDRETIVS DVMRGAGKEP VSCDVAASVR DGLSSRCRII DSSEPSTRDH
601: GDKHEKQHES RQTSAKPRGV KGGTCCFLVV LRRLYQILYN RLQNARYLCT SDNLYAEFKE KLTKLHYRVI DNSNFEDFCL KYLGPMSFEL FTLDTVINQV
701: IKQLCIISSK DPDNSIVQFL ENLQRPILPN ELPKHDREEQ ERALDDTVKL PRHFERRKKR KLENSATGSC QLGGVTETHH
101: NGNVDAVAVN PLMQKPMDFL SRVKTCPNIS DDDYAAFLQT MQDFCRDRTM TPREVYSNVE RCMRNCPELL EEFIDNFLPA DLKALVKEND NHSLDGVHMK
201: EGNGVSPHTE EDEEDKVKPL PAWTTSRIDE LPPKLEPKEL KRHCTPSYYL LPDNCIPQLS YRTELGRSIL NDALICPVSE EESPNHKAAN EYEAKMLLCE
301: EDMFESDMLL QWFSVTADFI ANLQHRAGSD VKIKEQLTPL HRRCIIRLYG EEFLEALLDT DNASAALPVI LSRLNHSIVE LQEARLRLRK TRSEVMAKNY
401: YRALDHRGPS FKQLDAKRMS RKALLAEAKE INAMKPKAED QYANPDIHRD ISSIISSACA SEEKQMVTWT KIVHPFLSAH CAQPSSEETV APEKACEHCG
501: TRKDILNNNP DAFTDNNLPL SSKRGEFVSK NSKDFSSSHD GSGADIEEGE FIPDRETIVS DVMRGAGKEP VSCDVAASVR DGLSSRCRII DSSEPSTRDH
601: GDKHEKQHES RQTSAKPRGV KGGTCCFLVV LRRLYQILYN RLQNARYLCT SDNLYAEFKE KLTKLHYRVI DNSNFEDFCL KYLGPMSFEL FTLDTVINQV
701: IKQLCIISSK DPDNSIVQFL ENLQRPILPN ELPKHDREEQ ERALDDTVKL PRHFERRKKR KLENSATGSC QLGGVTETHH
0001: MVGGGSAQKL TTNDALAYLK AVKDKFQDQR GKYDEFLEVM KNFKSQRVDT AGVITRVKEL FKGHQELILG FNTFLPKGFE ITLQPEDGQP PLKKRVEFEE
0101: AISFVNKIKT RFQGDDRVYK SFLDILNMYR RDSKSITEVY QEVAILFRDH SDLLVEFTHF LPDTSATASI PSVKTSVRER GVSLADKKDR IITPHPDHDY
0201: GTEHIDQDRE RPIKKENKEH MRGTNKENEH RDARDFEPHS KKEQFLNKKQ KLHIRGDDPA EISNQSKLSG AVPSSSTYDE KGAMKSYSQD LAIVDRVKEK
0301: LNASEYQEFL RCLNLFSKEI ISRPELQSLV GNLIGVYPDL MDSFIEFLVQ CEKNEGLLSG ILTKKSLWSE GKYPQPSLDN DRDQEHKRDD GLRDRDHEKE
0401: RLEKAAANLK WAKPISELDL SNCEQCTPSY RLLPKNYPIS IASQKTEIGK LVLNDHWVSV TSGSEDYSFS HMRKNQYEES LFKCEDDRFE LDMLLESVNS
0501: TTKHVEELLT KINSNELKTN SPIRVEDHLT ALNLRCIERL YGDHGLDVMD VLKKNVSLAL PVILTRLKQK QEEWARCRSD FDKVWAEIYA KNYYKSLDHR
0601: SFYFKQQDSK KLSMKALLAE IKEITEKKRE DDSLLAFAAG NRLSISPDLE FDYPDHDLHE DLYQLIKYSC AEMCSTEQLD KVMKIWTTFV EQIFGVPSRP
0701: QGAEDQEDVV KSMNQNVKSG SSSAGESEGS PHNYASVADS RRSKSSRKAN EHSQLGQTSN SERDGAAGRT SDALCETAQH EKMLKNVVTS DEKPESKQAV
0801: SIERAHDSTA LAVDGLLDQS NGGSSIVHMT GHCNNNLKPV TCGTELELKM NDGNGPKLEV GNKKLLTNGI AVEITSDQEM AGTSKVEREE GELSPNGDFE
0901: EDNFAVYAKT DFETFSKAND STGNNISGDR SREGEPSCLE TRAENDAEGD ENAARSSEDS RNEYENGDVS GTESGGGEDP EDDLDNNNKG ESEGEAECMA
1001: DAHDAEENGS ALPVSARFLL HVKPLVKYVP SAIALHDKDK DSLKNSQVFY GNDSFYVLFR LHRILYERIL SAKVNSSSPE GKWRTSNTKN PTDSYARFMT
1101: ALYNLLDGTS DNAKFEDDCR AIIGTQSYIL FTLDKLIHKF IKHLQVVVAD EMDNKLLQLY FYEKSRRPET IFDAVYYDNT RVLLPDENIY RIECRLSTPA
1201: KLSIQLMCNG LDKPDVTSVS IDPTFAAYLH NDFLSIQPNA REDRRIYLNR NKRKVCREDE QLYSTDEVKI KNGLECKIAC GSSKVSYVLE TEDLLVRVKK
1301: RRKTLCHNQD SWVRQMRLQY YKNNFL
0101: AISFVNKIKT RFQGDDRVYK SFLDILNMYR RDSKSITEVY QEVAILFRDH SDLLVEFTHF LPDTSATASI PSVKTSVRER GVSLADKKDR IITPHPDHDY
0201: GTEHIDQDRE RPIKKENKEH MRGTNKENEH RDARDFEPHS KKEQFLNKKQ KLHIRGDDPA EISNQSKLSG AVPSSSTYDE KGAMKSYSQD LAIVDRVKEK
0301: LNASEYQEFL RCLNLFSKEI ISRPELQSLV GNLIGVYPDL MDSFIEFLVQ CEKNEGLLSG ILTKKSLWSE GKYPQPSLDN DRDQEHKRDD GLRDRDHEKE
0401: RLEKAAANLK WAKPISELDL SNCEQCTPSY RLLPKNYPIS IASQKTEIGK LVLNDHWVSV TSGSEDYSFS HMRKNQYEES LFKCEDDRFE LDMLLESVNS
0501: TTKHVEELLT KINSNELKTN SPIRVEDHLT ALNLRCIERL YGDHGLDVMD VLKKNVSLAL PVILTRLKQK QEEWARCRSD FDKVWAEIYA KNYYKSLDHR
0601: SFYFKQQDSK KLSMKALLAE IKEITEKKRE DDSLLAFAAG NRLSISPDLE FDYPDHDLHE DLYQLIKYSC AEMCSTEQLD KVMKIWTTFV EQIFGVPSRP
0701: QGAEDQEDVV KSMNQNVKSG SSSAGESEGS PHNYASVADS RRSKSSRKAN EHSQLGQTSN SERDGAAGRT SDALCETAQH EKMLKNVVTS DEKPESKQAV
0801: SIERAHDSTA LAVDGLLDQS NGGSSIVHMT GHCNNNLKPV TCGTELELKM NDGNGPKLEV GNKKLLTNGI AVEITSDQEM AGTSKVEREE GELSPNGDFE
0901: EDNFAVYAKT DFETFSKAND STGNNISGDR SREGEPSCLE TRAENDAEGD ENAARSSEDS RNEYENGDVS GTESGGGEDP EDDLDNNNKG ESEGEAECMA
1001: DAHDAEENGS ALPVSARFLL HVKPLVKYVP SAIALHDKDK DSLKNSQVFY GNDSFYVLFR LHRILYERIL SAKVNSSSPE GKWRTSNTKN PTDSYARFMT
1101: ALYNLLDGTS DNAKFEDDCR AIIGTQSYIL FTLDKLIHKF IKHLQVVVAD EMDNKLLQLY FYEKSRRPET IFDAVYYDNT RVLLPDENIY RIECRLSTPA
1201: KLSIQLMCNG LDKPDVTSVS IDPTFAAYLH NDFLSIQPNA REDRRIYLNR NKRKVCREDE QLYSTDEVKI KNGLECKIAC GSSKVSYVLE TEDLLVRVKK
1301: RRKTLCHNQD SWVRQMRLQY YKNNFL
Arabidopsis Description
SNL3SIN3-like 3 [Source:TAIR;Acc:AT1G24190]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.