Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G438600.1 | Wheat | nucleus | 91.6 | 95.13 |
| TraesCS1B01G463900.1 | Wheat | nucleus | 89.38 | 92.82 |
| HORVU1Hr1G093490.1 | Barley | nucleus | 82.72 | 86.45 |
| TraesCS1A01G429200.1 | Wheat | nucleus | 68.77 | 65.76 |
| Zm00001d009729_P001 | Maize | nucleus | 12.47 | 41.22 |
| Os05t0588700-01 | Rice | nucleus | 40.49 | 38.23 |
| KXG22653 | Sorghum | nucleus | 39.14 | 37.87 |
| GSMUA_AchrUn_... | Banana | cytosol | 12.35 | 24.51 |
| CDY71516 | Canola | cytosol, mitochondrion, nucleus | 7.41 | 23.08 |
| TraesCS3A01G002800.1 | Wheat | cytoskeleton, cytosol, nucleus | 3.95 | 16.84 |
| GSMUA_Achr7P17160_001 | Banana | nucleus | 21.85 | 16.16 |
| GSMUA_AchrUn_... | Banana | nucleus | 6.42 | 15.57 |
| TraesCS1A01G002700.1 | Wheat | nucleus | 25.06 | 15.24 |
Protein Annotations
| Gene3D:1.20.1160.11 | MapMan:35.1 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | InterPro:HDAC_interact_dom | InterPro:IPR003822 | InterPro:PAH | InterPro:PAH_sf |
| PFAM:PF02671 | PFAM:PF08295 | PFAM:PF16879 | PFscan:PS51477 | PANTHER:PTHR12346 | PANTHER:PTHR12346:SF10 |
| SMART:SM00761 | SUPFAM:SSF47762 | InterPro:Sin3_C | EnsemblPlantsGene:TraesCS1A01G429100 | EnsemblPlants:TraesCS1A01G429100.1 | SEG:seg |
Description
No Description!
Coordinates
chr1A:-:582648179..582652314
Molecular Weight (calculated)
92520.7 Da
IEP (calculated)
5.889
GRAVY (calculated)
-0.658
Length
810 amino acids
Sequence
(BLAST)
(BLAST)
001: MASPNEADDD NFGYKEGKKE YMLETMQCLL FARENLPDDV YHEFVKTMTG IWKKRADPDG EIRNICPENC IETALKLFQG CPTVKQSFLN FTEGRSPFEG
101: NGNVDAVAVN PLVQKPMDFL SRVKTCPNIS DDDYAAFLQT MQDFCRDRTM TPREVYSNVE RCMRNCPELL EEFIDNFLPA DLKVLVKEND NHSLDGVHMK
201: EGNGVSPHTE EDEEDKVKRL PEWTTSRIDE LPPKLEPKEL KRHCTPSYYL LPDNCTPLLS YRTKLGRSIL NDALICPVSE EESPNHKAAN EYEAKMLLCE
301: EDMFESDMLL QWFSVTADFI ANLQHRVRSH VKIKEQLTPL HRRCIIRLYG EEFLEALLDT DNASAALPVI LSRLNQSIVE IRESRLRLHK TCSEVIAKNY
401: YRALDNRGPC FKQLDAKRMN RKALLAEAKE INAMKPKPED QYAKEINAMK PKAEDRHAKE INKMKPKAED QYANPDIHED ISSIISSACA SEEKQMVTWT
501: KIVHPFLSAH CAQPSSEETV APEKACEHCG TRKDILNDNP DAFTDNNLPL SSKRGEFVSK NSKDFSSSHD GSGADIEEGE FIPDRETIIL DVMRGAGKEP
601: VSCDVAGSVR DGLSSRCRII DTSEPSTRDH GAKHEKQHES RQTSAKPRGV KGGTCCFIVV LRRLYQILYN RLQNARYLCT SDDLYAEFKD KLTKLHYRAI
701: DNSNFEDFCL KYLGPMSFEL FTLDTVINQV IKQLCIISSK DPDNSIVQFL ENLQRPVLPN ELPKHDREEQ EKALDYTVKL PRHFERRKKR KLENSATGSC
801: QLGGVTETHH
101: NGNVDAVAVN PLVQKPMDFL SRVKTCPNIS DDDYAAFLQT MQDFCRDRTM TPREVYSNVE RCMRNCPELL EEFIDNFLPA DLKVLVKEND NHSLDGVHMK
201: EGNGVSPHTE EDEEDKVKRL PEWTTSRIDE LPPKLEPKEL KRHCTPSYYL LPDNCTPLLS YRTKLGRSIL NDALICPVSE EESPNHKAAN EYEAKMLLCE
301: EDMFESDMLL QWFSVTADFI ANLQHRVRSH VKIKEQLTPL HRRCIIRLYG EEFLEALLDT DNASAALPVI LSRLNQSIVE IRESRLRLHK TCSEVIAKNY
401: YRALDNRGPC FKQLDAKRMN RKALLAEAKE INAMKPKPED QYAKEINAMK PKAEDRHAKE INKMKPKAED QYANPDIHED ISSIISSACA SEEKQMVTWT
501: KIVHPFLSAH CAQPSSEETV APEKACEHCG TRKDILNDNP DAFTDNNLPL SSKRGEFVSK NSKDFSSSHD GSGADIEEGE FIPDRETIIL DVMRGAGKEP
601: VSCDVAGSVR DGLSSRCRII DTSEPSTRDH GAKHEKQHES RQTSAKPRGV KGGTCCFIVV LRRLYQILYN RLQNARYLCT SDDLYAEFKD KLTKLHYRAI
701: DNSNFEDFCL KYLGPMSFEL FTLDTVINQV IKQLCIISSK DPDNSIVQFL ENLQRPVLPN ELPKHDREEQ EKALDYTVKL PRHFERRKKR KLENSATGSC
801: QLGGVTETHH
0001: MVGGGSAQKL TTNDALAYLK AVKDKFQDQR GKYDEFLEVM KNFKSQRVDT AGVITRVKEL FKGHQELILG FNTFLPKGFE ITLQPEDGQP PLKKRVEFEE
0101: AISFVNKIKT RFQGDDRVYK SFLDILNMYR RDSKSITEVY QEVAILFRDH SDLLVEFTHF LPDTSATASI PSVKTSVRER GVSLADKKDR IITPHPDHDY
0201: GTEHIDQDRE RPIKKENKEH MRGTNKENEH RDARDFEPHS KKEQFLNKKQ KLHIRGDDPA EISNQSKLSG AVPSSSTYDE KGAMKSYSQD LAIVDRVKEK
0301: LNASEYQEFL RCLNLFSKEI ISRPELQSLV GNLIGVYPDL MDSFIEFLVQ CEKNEGLLSG ILTKSKSTYL LQGEGKYPQP SLDNDRDQEH KRDDGLRDRD
0401: HEKERLEKAA ANLKWAKPIS ELDLSNCEQC TPSYRLLPKN YPISIASQKT EIGKLVLNDH WVSVTSGSED YSFSHMRKNQ YEESLFKCED DRFELDMLLE
0501: SVNSTTKHVE ELLTKINSNE LKTNSPIRVE DHLTALNLRC IERLYGDHGL DVMDVLKKNV SLALPVILTR LKQKQEEWAR CRSDFDKVWA EIYAKNYYKS
0601: LDHRSFYFKQ QDSKKLSMKA LLAEIKEITE KKREDDSLLA FAAGNRLSIS PDLEFDYPDH DLHEDLYQLI KYSCAEMCST EQLDKVMKIW TTFVEQIFGV
0701: PSRPQGAEDQ EDVVKSMNQN VKSGSSSAGE SEGSPHNYAS VADSRRSKSS RKANEHSQLG QTSNSERDGA AGRTSDALCE TAQHEKMLKN VVTSDEKPES
0801: KQAVSIERAH DSTALAVDGL LDQSNGGSSI VHMTGHCNNN LKPVTCGTEL ELKMNDGNGP KLEVGNKKLL TNGIAVEITS DQEMAGTSKV EREEGELSPN
0901: GDFEEDNFAV YAKTDFETFS KANDSTGNNI SGDRSREGEP SCLETRAEND AEGDENAARS SEDSRNEYEN GDVSGTESGG GEDPEDDLDN NNKGESEGEA
1001: ECMADAHDAE ENGSALPVSA RFLLHVKPLV KYVPSAIALH DKDKDSLKNS QVFYGNDSFY VLFRLHRILY ERILSAKVNS SSPEGKWRTS NTKNPTDSYA
1101: RFMTALYNLL DGTSDNAKFE DDCRAIIGTQ SYILFTLDKL IHKFIKHLQV VVADEMDNKL LQLYFYEKSR RPETIFDAVY YDNTRVLLPD ENIYRIECRL
1201: STPAKLSIQL MCNGLDKPDV TSVSIDPTFA AYLHNDFLSI QPNAREDRRI YLNRNKRKVC REDEQLYSTD EVKIKNGLEC KIACGSSKVS YVLETEDLLV
1301: RVKKRRKTLC HNQDSWVRQM RLQYYKNNFL
0101: AISFVNKIKT RFQGDDRVYK SFLDILNMYR RDSKSITEVY QEVAILFRDH SDLLVEFTHF LPDTSATASI PSVKTSVRER GVSLADKKDR IITPHPDHDY
0201: GTEHIDQDRE RPIKKENKEH MRGTNKENEH RDARDFEPHS KKEQFLNKKQ KLHIRGDDPA EISNQSKLSG AVPSSSTYDE KGAMKSYSQD LAIVDRVKEK
0301: LNASEYQEFL RCLNLFSKEI ISRPELQSLV GNLIGVYPDL MDSFIEFLVQ CEKNEGLLSG ILTKSKSTYL LQGEGKYPQP SLDNDRDQEH KRDDGLRDRD
0401: HEKERLEKAA ANLKWAKPIS ELDLSNCEQC TPSYRLLPKN YPISIASQKT EIGKLVLNDH WVSVTSGSED YSFSHMRKNQ YEESLFKCED DRFELDMLLE
0501: SVNSTTKHVE ELLTKINSNE LKTNSPIRVE DHLTALNLRC IERLYGDHGL DVMDVLKKNV SLALPVILTR LKQKQEEWAR CRSDFDKVWA EIYAKNYYKS
0601: LDHRSFYFKQ QDSKKLSMKA LLAEIKEITE KKREDDSLLA FAAGNRLSIS PDLEFDYPDH DLHEDLYQLI KYSCAEMCST EQLDKVMKIW TTFVEQIFGV
0701: PSRPQGAEDQ EDVVKSMNQN VKSGSSSAGE SEGSPHNYAS VADSRRSKSS RKANEHSQLG QTSNSERDGA AGRTSDALCE TAQHEKMLKN VVTSDEKPES
0801: KQAVSIERAH DSTALAVDGL LDQSNGGSSI VHMTGHCNNN LKPVTCGTEL ELKMNDGNGP KLEVGNKKLL TNGIAVEITS DQEMAGTSKV EREEGELSPN
0901: GDFEEDNFAV YAKTDFETFS KANDSTGNNI SGDRSREGEP SCLETRAEND AEGDENAARS SEDSRNEYEN GDVSGTESGG GEDPEDDLDN NNKGESEGEA
1001: ECMADAHDAE ENGSALPVSA RFLLHVKPLV KYVPSAIALH DKDKDSLKNS QVFYGNDSFY VLFRLHRILY ERILSAKVNS SSPEGKWRTS NTKNPTDSYA
1101: RFMTALYNLL DGTSDNAKFE DDCRAIIGTQ SYILFTLDKL IHKFIKHLQV VVADEMDNKL LQLYFYEKSR RPETIFDAVY YDNTRVLLPD ENIYRIECRL
1201: STPAKLSIQL MCNGLDKPDV TSVSIDPTFA AYLHNDFLSI QPNAREDRRI YLNRNKRKVC REDEQLYSTD EVKIKNGLEC KIACGSSKVS YVLETEDLLV
1301: RVKKRRKTLC HNQDSWVRQM RLQYYKNNFL
Arabidopsis Description
SNL3SIN3-like 3 [Source:TAIR;Acc:AT1G24190]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.