Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G438700.1 | Wheat | cytosol | 55.14 | 93.59 |
| TraesCS1B01G464000.1 | Wheat | nucleus | 91.03 | 93.12 |
| HORVU1Hr1G093530.1 | Barley | nucleus | 78.39 | 83.63 |
| HORVU1Hr1G093540.1 | Barley | nucleus | 78.39 | 83.63 |
| HORVU1Hr1G093550.1 | Barley | nucleus | 72.96 | 82.95 |
| TraesCS1A01G429100.1 | Wheat | nucleus | 65.76 | 68.77 |
| Zm00001d009729_P001 | Maize | nucleus | 12.75 | 44.08 |
| KXG22653 | Sorghum | nucleus | 39.91 | 40.38 |
| Os05t0588700-01 | Rice | nucleus | 39.2 | 38.69 |
| GSMUA_AchrUn_... | Banana | cytosol | 12.4 | 25.74 |
| CDY71516 | Canola | cytosol, mitochondrion, nucleus | 7.79 | 25.38 |
| GSMUA_AchrUn_... | Banana | nucleus | 6.97 | 17.66 |
| GSMUA_Achr7P17160_001 | Banana | nucleus | 21.25 | 16.44 |
| TraesCS3A01G002800.1 | Wheat | cytoskeleton, cytosol, nucleus | 3.66 | 16.32 |
| TraesCS1A01G002700.1 | Wheat | nucleus | 25.03 | 15.92 |
Protein Annotations
| EnsemblPlants:TraesCS1A01G429200.1 | EnsemblPlantsGene:TraesCS1A01G429200 | Gene3D:1.20.1160.11 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:HDAC_interact_dom | InterPro:IPR003822 | InterPro:PAH |
| InterPro:PAH_sf | PANTHER:PTHR12346 | PANTHER:PTHR12346:SF10 | PFAM:PF02671 | PFAM:PF08295 | PFscan:PS51477 |
| SEG:seg | SMART:SM00761 | SUPFAM:SSF47762 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr1A:-:582656596..582660965
Molecular Weight (calculated)
95576.9 Da
IEP (calculated)
6.421
GRAVY (calculated)
-0.582
Length
847 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSDEAGDD NYGYKRGEKE YMLETVQCLL FARDNLPSDV YRKFVKAMTE VWKNCADPDG EIRNICPENC IETALKLFQG WATVKQSFLN FTEGRSPVKG
101: NGIVDADVEA VVVNPLLQKP IDFLSRLKAC PNMSADHYAA FLKIMQDYFR DRTMTPRKVY KKVRRCMRDC PELLEEFVDN FLPADLKAFV KVKANDNHRS
201: GGIHMKEGYG ELSHTEEDEE DKVKPLPDWN SSKAQELPPE VDPKKLERAC TPSYYLLPDN LTLHSSYWTN LGRSILNDTL VCSISGMESS KHKTINGYET
301: NIFYCEEDMF ESDMLLHRFR ATADLIANLQ TRAGSHLKIS EHLTPLHRRC IEKLYDDDLD LDDLLESPNT SSVLAVLLSR LKQKVEDLSE ARSYLHKAHS
401: QVIAKNYYRS LDHRGLSFKQ LDAKRMSQKA LLAEANEINK KNLKARDKNA DTDMSNAGDK YAADTAMSNA GDKYADTDTS NAGDKYADTD MHKDISSILS
501: AACASEEKQV MNWAKIVHPF LSAHCLWPSS KETVAPAKAC EHCRTSKDFL SSIPDALPAT KLSSSSKRGE FLKKNSNDLS SSHDGFGQDI DQESDLMPEP
601: EIIESDVMLG ARKEPVSCDV GTSGIDGLSS GCRIIDTAEP STRDHGNKHE KQHESSQHSK TSAKLRGVKG GTCCFLIVLR RLYQILYDRL QTARGLCADD
701: LLYAEFKDKI IKLHAHCIDN SSFEDFCLQF LGPKSVELFT LDIVINRVIK QLCIIYSRDQ DNSLFQFLEN FGRPVLPKLV SRHQNFPNNP SNVLPKYDQE
801: EQEKALADTE KLPRHFERRK KRKLENSATI SSAWSSSQLG AVTETHG
101: NGIVDADVEA VVVNPLLQKP IDFLSRLKAC PNMSADHYAA FLKIMQDYFR DRTMTPRKVY KKVRRCMRDC PELLEEFVDN FLPADLKAFV KVKANDNHRS
201: GGIHMKEGYG ELSHTEEDEE DKVKPLPDWN SSKAQELPPE VDPKKLERAC TPSYYLLPDN LTLHSSYWTN LGRSILNDTL VCSISGMESS KHKTINGYET
301: NIFYCEEDMF ESDMLLHRFR ATADLIANLQ TRAGSHLKIS EHLTPLHRRC IEKLYDDDLD LDDLLESPNT SSVLAVLLSR LKQKVEDLSE ARSYLHKAHS
401: QVIAKNYYRS LDHRGLSFKQ LDAKRMSQKA LLAEANEINK KNLKARDKNA DTDMSNAGDK YAADTAMSNA GDKYADTDTS NAGDKYADTD MHKDISSILS
501: AACASEEKQV MNWAKIVHPF LSAHCLWPSS KETVAPAKAC EHCRTSKDFL SSIPDALPAT KLSSSSKRGE FLKKNSNDLS SSHDGFGQDI DQESDLMPEP
601: EIIESDVMLG ARKEPVSCDV GTSGIDGLSS GCRIIDTAEP STRDHGNKHE KQHESSQHSK TSAKLRGVKG GTCCFLIVLR RLYQILYDRL QTARGLCADD
701: LLYAEFKDKI IKLHAHCIDN SSFEDFCLQF LGPKSVELFT LDIVINRVIK QLCIIYSRDQ DNSLFQFLEN FGRPVLPKLV SRHQNFPNNP SNVLPKYDQE
801: EQEKALADTE KLPRHFERRK KRKLENSATI SSAWSSSQLG AVTETHG
0001: MKRVREEVYV EPQMRGPTVS SRGETNGRPS TISGGGTTGG LTTVDALTYL KAVKDMFQDN KEKYETFLGV MKDFKAQRVD TNGVIARVKD LFKGYDDLLL
0101: GFNTFLPKGY KITLQPEDEK PKKPVDFQVA IEFVNRIKAR FGGDDRAYKK FLDILNMYRK ETKSINEVYQ EVTLLFQDHE DLLGEFVHFL PDFRGSVSVN
0201: DPLFQRNTIP RDRNSTFPGM HPKHFEKKIK RSRHDEYTEL SDQREDGDEN LVAYSAESLA NQGQWPGYPK VEDTEGIQIY ESNGGHERDP DIGSQKNLLS
0301: TNHMAKAINE LDLTDCAQCT PSYRRLPDDY PIQIPSYRNS LGEKVLNDHW VSVTSGSEDY SFKHMRKNQY EESLFRCEDD RFELDMLLES VSAAIKRVES
0401: LLEKINNNTI SIETPICIRE HLSELNLRCI ERLYGDYGLD VMDFLKKNSH IALPVILTRL KQKQEEWARC RADFRKVWAE VYAKNHHKSL DHRSFYFKQQ
0501: DSKNLSTKGL VAEIKDISER KHKEDLLRAI AVGTKPSFTP DVEFIYTDTK VHTDLYKLIK YYCEEICATE QSDKVMKLWV TFLEPMFGVP SRSETIETMK
0601: DVAKIEDNQE HHDASEAVKE NTCDGSMASN LKPLTPPKMP NKENPMIQGS SFAQDLPVNT GESIQQDKLH DVAAITNEDS QPSKLVSTRN DLIMEGVENR
0701: SRVSDVSMGG HKVEREEGEL SPTESCEQEN FEVYKENGLE PVQKLPDNEI SNTDREPKEG ACGTEAVTRS NALPEDDDNK ITQKLSEGDE NASKFIVSAS
0801: KFGGQVSSDE EHKGAESENE AGGMVNSNEG EDGSFFTFSE RYLQPVKPLA KHVPGTLQAS ECDTRNDSRV FYGNDSLYVL FRLHQMLYER IQSAKIHSER
0901: KWKAPDSTST DSYTRFMEAL YNLLDGSSDN TKFEDECRAI IGAQSYVLFT LDKLVQKFVK HLHAVAADET DTKLLQLYAY ENYRKPGRFF DIVYHENARA
1001: LLHDQNIYRI EYSSAQTRLG IQLMNSWNDQ PEVTAVTVEP GFANYLQNDF LSFVSDEEKP GLFLKRNKAK LSGPGEESLG MSRALEGLNI INEVECKIAC
1101: SSFKVKYEPH TADLLYRRKQ KKATLNPTGP ENVKTSDSSE LSRKKRISRF HMSLNRRLVA LP
0101: GFNTFLPKGY KITLQPEDEK PKKPVDFQVA IEFVNRIKAR FGGDDRAYKK FLDILNMYRK ETKSINEVYQ EVTLLFQDHE DLLGEFVHFL PDFRGSVSVN
0201: DPLFQRNTIP RDRNSTFPGM HPKHFEKKIK RSRHDEYTEL SDQREDGDEN LVAYSAESLA NQGQWPGYPK VEDTEGIQIY ESNGGHERDP DIGSQKNLLS
0301: TNHMAKAINE LDLTDCAQCT PSYRRLPDDY PIQIPSYRNS LGEKVLNDHW VSVTSGSEDY SFKHMRKNQY EESLFRCEDD RFELDMLLES VSAAIKRVES
0401: LLEKINNNTI SIETPICIRE HLSELNLRCI ERLYGDYGLD VMDFLKKNSH IALPVILTRL KQKQEEWARC RADFRKVWAE VYAKNHHKSL DHRSFYFKQQ
0501: DSKNLSTKGL VAEIKDISER KHKEDLLRAI AVGTKPSFTP DVEFIYTDTK VHTDLYKLIK YYCEEICATE QSDKVMKLWV TFLEPMFGVP SRSETIETMK
0601: DVAKIEDNQE HHDASEAVKE NTCDGSMASN LKPLTPPKMP NKENPMIQGS SFAQDLPVNT GESIQQDKLH DVAAITNEDS QPSKLVSTRN DLIMEGVENR
0701: SRVSDVSMGG HKVEREEGEL SPTESCEQEN FEVYKENGLE PVQKLPDNEI SNTDREPKEG ACGTEAVTRS NALPEDDDNK ITQKLSEGDE NASKFIVSAS
0801: KFGGQVSSDE EHKGAESENE AGGMVNSNEG EDGSFFTFSE RYLQPVKPLA KHVPGTLQAS ECDTRNDSRV FYGNDSLYVL FRLHQMLYER IQSAKIHSER
0901: KWKAPDSTST DSYTRFMEAL YNLLDGSSDN TKFEDECRAI IGAQSYVLFT LDKLVQKFVK HLHAVAADET DTKLLQLYAY ENYRKPGRFF DIVYHENARA
1001: LLHDQNIYRI EYSSAQTRLG IQLMNSWNDQ PEVTAVTVEP GFANYLQNDF LSFVSDEEKP GLFLKRNKAK LSGPGEESLG MSRALEGLNI INEVECKIAC
1101: SSFKVKYEPH TADLLYRRKQ KKATLNPTGP ENVKTSDSSE LSRKKRISRF HMSLNRRLVA LP
Arabidopsis Description
SNL5SIN3-like 5 [Source:UniProtKB/TrEMBL;Acc:F4IEM8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.