Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G438700.1 | Wheat | cytosol | 55.43 | 91.98 |
| TraesCS1A01G429200.1 | Wheat | nucleus | 93.12 | 91.03 |
| HORVU1Hr1G093530.1 | Barley | nucleus | 80.07 | 83.5 |
| HORVU1Hr1G093540.1 | Barley | nucleus | 80.07 | 83.5 |
| HORVU1Hr1G093550.1 | Barley | nucleus | 74.4 | 82.68 |
| TraesCS1B01G463900.1 | Wheat | nucleus | 64.37 | 68.33 |
| Zm00001d009729_P001 | Maize | nucleus | 13.16 | 44.49 |
| KXG22653 | Sorghum | nucleus | 40.58 | 40.14 |
| Os05t0588700-01 | Rice | nucleus | 40.58 | 39.16 |
| GSMUA_AchrUn_... | Banana | cytosol | 12.68 | 25.74 |
| CDY71516 | Canola | cytosol, mitochondrion, nucleus | 7.97 | 25.38 |
| GSMUA_AchrUn_... | Banana | nucleus | 7.37 | 18.26 |
| GSMUA_Achr7P17160_001 | Banana | nucleus | 21.74 | 16.44 |
| TraesCS1B01G002000.1 | Wheat | nucleus | 25.0 | 15.96 |
| TraesCS3B01G005900.1 | Wheat | nucleus | 25.72 | 14.85 |
Protein Annotations
| EnsemblPlants:TraesCS1B01G464000.1 | EnsemblPlantsGene:TraesCS1B01G464000 | Gene3D:1.20.1160.11 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:HDAC_interact_dom | InterPro:IPR003822 | InterPro:PAH |
| InterPro:PAH_sf | PANTHER:PTHR12346 | PANTHER:PTHR12346:SF10 | PFAM:PF02671 | PFAM:PF08295 | PFscan:PS51477 |
| SEG:seg | SMART:SM00761 | SUPFAM:SSF47762 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr1B:-:675763151..675767522
Molecular Weight (calculated)
93565.5 Da
IEP (calculated)
6.632
GRAVY (calculated)
-0.613
Length
828 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSDEADDD NYGYKTGKKG YTVETVQCLL FARDNLPSDV YRKFVKAMTE VWKNRADPDG EIRNICPENC IGTALKLFQG WATVKQSFLN FIEGRSPVEG
101: NGNANPDVEA VVFNPLIQKP MDFLSRLKAC PNMSDDHYAA FLKIMQEYFR DRTMTPRKVY KKVRRCMRDC PELLEEFVDN FLPADLKAFV KVKANDNHRS
201: DGIHTKEGYG ELPHTEEDEE DKVKPLPDWN SSKAQELPPE VDPKKLERAC TPSYYLLPDN LTLHSSYWTN LGRSILNDTL VCSVSGMESS KHKTINGYET
301: NILYCEEDMF ESDMLLHRFR ATADLIANLQ TRAGSRLKIS EHLTPLHRRC IEKLYDDDPE LDDLLESQNT SSVLAVLLSR LKQKVEDLSE ARSYLHKAHS
401: QVIAKNYYRS LDHRGLSFKQ LDAKRMSQKA LLAEANEINK TNSNAGDKNA DTDMRNAGDK YADTAMSNAG DKYADTDMHK DISSILSAAC ASEEKQVMNW
501: AKIVHPFLSA HCLWPSSKET VAPAKACEHC RTSKDFLSSI PDALPATKLP SSSKRGEFLK KNSNDLSSSH DGFGQDIEGD FVPEPEIIES DVMPGAGKEP
601: ISCDVATSGM DGLSSHCRIV DTSEPSTCDH GNKHESRQHS KTSTKLRGVK GGTCCFLIVL RRLYQILYER LQTARGLCAD YLLYAEFKEK IIKLHAHCID
701: NSSFEDFCLQ FLGPKSVELF TLDIVINRVI KQLCIIYSRD QDNSLFQFLE NFGRPVLPKP VFRHQNFPNN PSNGLPKYDQ EEQEKTLADT EKLPRHFERR
801: KKRKLENSAT SSSAWSSSQL GAVTKTHG
101: NGNANPDVEA VVFNPLIQKP MDFLSRLKAC PNMSDDHYAA FLKIMQEYFR DRTMTPRKVY KKVRRCMRDC PELLEEFVDN FLPADLKAFV KVKANDNHRS
201: DGIHTKEGYG ELPHTEEDEE DKVKPLPDWN SSKAQELPPE VDPKKLERAC TPSYYLLPDN LTLHSSYWTN LGRSILNDTL VCSVSGMESS KHKTINGYET
301: NILYCEEDMF ESDMLLHRFR ATADLIANLQ TRAGSRLKIS EHLTPLHRRC IEKLYDDDPE LDDLLESQNT SSVLAVLLSR LKQKVEDLSE ARSYLHKAHS
401: QVIAKNYYRS LDHRGLSFKQ LDAKRMSQKA LLAEANEINK TNSNAGDKNA DTDMRNAGDK YADTAMSNAG DKYADTDMHK DISSILSAAC ASEEKQVMNW
501: AKIVHPFLSA HCLWPSSKET VAPAKACEHC RTSKDFLSSI PDALPATKLP SSSKRGEFLK KNSNDLSSSH DGFGQDIEGD FVPEPEIIES DVMPGAGKEP
601: ISCDVATSGM DGLSSHCRIV DTSEPSTCDH GNKHESRQHS KTSTKLRGVK GGTCCFLIVL RRLYQILYER LQTARGLCAD YLLYAEFKEK IIKLHAHCID
701: NSSFEDFCLQ FLGPKSVELF TLDIVINRVI KQLCIIYSRD QDNSLFQFLE NFGRPVLPKP VFRHQNFPNN PSNGLPKYDQ EEQEKTLADT EKLPRHFERR
801: KKRKLENSAT SSSAWSSSQL GAVTKTHG
0001: MKRVREEVYV EPQMRGPTVS SRGETNGRPS TISGGGTTGG LTTVDALTYL KAVKDMFQDN KEKYETFLGV MKDFKAQRVD TNGVIARVKD LFKGYDDLLL
0101: GFNTFLPKGY KITLQPEDEK PKKPVDFQVA IEFVNRIKAR FGGDDRAYKK FLDILNMYRK ETKSINEVYQ EVTLLFQDHE DLLGEFVHFL PDFRGSVSVN
0201: DPLFQRNTIP RDRNSTFPGM HPKHFEKKIK RSRHDEYTEL SDQREDGDEN LVAYSAESLA NQGQWPGYPK VEDTEGIQIY ESNGGHERDP DIGSQKNLLS
0301: TNHMAKAINE LDLTDCAQCT PSYRRLPDDY PIQIPSYRNS LGEKVLNDHW VSVTSGSEDY SFKHMRKNQY EESLFRCEDD RFELDMLLES VSAAIKRVES
0401: LLEKINNNTI SIETPICIRE HLSELNLRCI ERLYGDYGLD VMDFLKKNSH IALPVILTRL KQKQEEWARC RADFRKVWAE VYAKNHHKSL DHRSFYFKQQ
0501: DSKNLSTKGL VAEIKDISER KHKEDLLRAI AVGTKPSFTP DVEFIYTDTK VHTDLYKLIK YYCEEICATE QSDKVMKLWV TFLEPMFGVP SRSETIETMK
0601: DVAKIEDNQE HHDASEAVKE NTCDGSMASN LKPLTPPKMP NKENPMIQGS SFAQDLPVNT GESIQQDKLH DVAAITNEDS QPSKLVSTRN DLIMEGVENR
0701: SRVSDVSMGG HKVEREEGEL SPTESCEQEN FEVYKENGLE PVQKLPDNEI SNTDREPKEG ACGTEAVTRS NALPEDDDNK ITQKLSEGDE NASKFIVSAS
0801: KFGGQVSSDE EHKGAESENE AGGMVNSNEG EDGSFFTFSE RYLQPVKPLA KHVPGTLQAS ECDTRNDSRV FYGNDSLYVL FRLHQMLYER IQSAKIHSER
0901: KWKAPDSTST DSYTRFMEAL YNLLDGSSDN TKFEDECRAI IGAQSYVLFT LDKLVQKFVK HLHAVAADET DTKLLQLYAY ENYRKPGRFF DIVYHENARA
1001: LLHDQNIYRI EYSSAQTRLG IQLMNSWNDQ PEVTAVTVEP GFANYLQNDF LSFVSDEEKP GLFLKRNKAK LSGPGEESLG MSRALEGLNI INEVECKIAC
1101: SSFKVKYEPH TADLLYRRKQ KKATLNPTGP ENVKTSDSSV KFFAENEICK NE
0101: GFNTFLPKGY KITLQPEDEK PKKPVDFQVA IEFVNRIKAR FGGDDRAYKK FLDILNMYRK ETKSINEVYQ EVTLLFQDHE DLLGEFVHFL PDFRGSVSVN
0201: DPLFQRNTIP RDRNSTFPGM HPKHFEKKIK RSRHDEYTEL SDQREDGDEN LVAYSAESLA NQGQWPGYPK VEDTEGIQIY ESNGGHERDP DIGSQKNLLS
0301: TNHMAKAINE LDLTDCAQCT PSYRRLPDDY PIQIPSYRNS LGEKVLNDHW VSVTSGSEDY SFKHMRKNQY EESLFRCEDD RFELDMLLES VSAAIKRVES
0401: LLEKINNNTI SIETPICIRE HLSELNLRCI ERLYGDYGLD VMDFLKKNSH IALPVILTRL KQKQEEWARC RADFRKVWAE VYAKNHHKSL DHRSFYFKQQ
0501: DSKNLSTKGL VAEIKDISER KHKEDLLRAI AVGTKPSFTP DVEFIYTDTK VHTDLYKLIK YYCEEICATE QSDKVMKLWV TFLEPMFGVP SRSETIETMK
0601: DVAKIEDNQE HHDASEAVKE NTCDGSMASN LKPLTPPKMP NKENPMIQGS SFAQDLPVNT GESIQQDKLH DVAAITNEDS QPSKLVSTRN DLIMEGVENR
0701: SRVSDVSMGG HKVEREEGEL SPTESCEQEN FEVYKENGLE PVQKLPDNEI SNTDREPKEG ACGTEAVTRS NALPEDDDNK ITQKLSEGDE NASKFIVSAS
0801: KFGGQVSSDE EHKGAESENE AGGMVNSNEG EDGSFFTFSE RYLQPVKPLA KHVPGTLQAS ECDTRNDSRV FYGNDSLYVL FRLHQMLYER IQSAKIHSER
0901: KWKAPDSTST DSYTRFMEAL YNLLDGSSDN TKFEDECRAI IGAQSYVLFT LDKLVQKFVK HLHAVAADET DTKLLQLYAY ENYRKPGRFF DIVYHENARA
1001: LLHDQNIYRI EYSSAQTRLG IQLMNSWNDQ PEVTAVTVEP GFANYLQNDF LSFVSDEEKP GLFLKRNKAK LSGPGEESLG MSRALEGLNI INEVECKIAC
1101: SSFKVKYEPH TADLLYRRKQ KKATLNPTGP ENVKTSDSSV KFFAENEICK NE
Arabidopsis Description
SNL5SIN3-like 5 [Source:UniProtKB/TrEMBL;Acc:F4IEM8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.