Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G002700.1 | Wheat | nucleus | 97.92 | 95.35 |
| TraesCS1D01G004900.4 | Wheat | nucleus | 98.0 | 94.5 |
| HORVU1Hr1G000290.3 | Barley | nucleus | 94.37 | 91.96 |
| Os05t0100500-01 | Rice | plastid | 19.28 | 67.93 |
| TraesCS3B01G005900.1 | Wheat | nucleus | 69.39 | 62.76 |
| KXG20992 | Sorghum | nucleus | 59.44 | 61.78 |
| Zm00001d035776_P004 | Maize | nucleus | 58.6 | 60.27 |
| GSMUA_Achr1P20690_001 | Banana | nucleus | 62.3 | 60.25 |
| GSMUA_Achr9P00800_001 | Banana | nucleus | 63.61 | 59.1 |
| GSMUA_Achr11P... | Banana | nucleus | 60.14 | 56.6 |
| GSMUA_Achr2P09580_001 | Banana | nucleus | 58.98 | 56.17 |
| VIT_01s0026g01010.t01 | Wine grape | nucleus | 61.84 | 55.27 |
| CDY23529 | Canola | cytosol | 6.71 | 55.06 |
| CDY48380 | Canola | cytosol | 6.63 | 54.43 |
| KRH69432 | Soybean | nucleus | 58.06 | 52.66 |
| KRH74716 | Soybean | nucleus | 53.28 | 52.55 |
| AT1G70030.1 | Thale cress | cytosol | 6.48 | 52.5 |
| CDY48381 | Canola | cytosol | 6.25 | 52.26 |
| CDY23528 | Canola | cytosol | 6.25 | 52.26 |
| Bra003968.1-P | Field mustard | cytosol | 6.25 | 52.26 |
| AT1G24200.1 | Thale cress | cytosol | 7.86 | 52.04 |
| CDY38781 | Canola | nucleus | 50.66 | 50.97 |
| Bra016241.1-P | Field mustard | nucleus | 50.58 | 50.89 |
| CDY11625 | Canola | nucleus | 50.42 | 50.7 |
| CDY23527 | Canola | nucleus | 50.27 | 50.39 |
| CDX68358 | Canola | nucleus | 49.81 | 50.31 |
| AT1G70060.2 | Thale cress | nucleus | 51.04 | 49.92 |
| Bra003967.1-P | Field mustard | nucleus | 49.73 | 49.05 |
| AT1G24190.3 | Thale cress | nucleus | 50.12 | 48.58 |
| Zm00001d041450_P002 | Maize | nucleus | 21.28 | 35.11 |
| Zm00001d041453_P001 | Maize | nucleus | 24.67 | 27.71 |
| TraesCS1B01G463900.1 | Wheat | nucleus | 15.27 | 25.38 |
| TraesCS1B01G464000.1 | Wheat | nucleus | 15.96 | 25.0 |
Protein Annotations
| Gene3D:1.20.1160.11 | MapMan:12.3.2.4.2 | ncoils:Coil | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:HDAC_interact_dom | InterPro:IPR003822 | InterPro:PAH |
| InterPro:PAH_sf | PFAM:PF02671 | PFAM:PF08295 | PFAM:PF16879 | PFscan:PS51477 | PANTHER:PTHR12346 |
| PANTHER:PTHR12346:SF21 | SMART:SM00761 | SUPFAM:SSF47762 | InterPro:Sin3_C | EnsemblPlantsGene:TraesCS1B01G002000 | EnsemblPlants:TraesCS1B01G002000.1 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr1B:-:1522570..1534766
Molecular Weight (calculated)
146210.0 Da
IEP (calculated)
5.854
GRAVY (calculated)
-0.739
Length
1297 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSPPPASPAL SAQKLTTNDA LAYLKAVKDK FHDNRAKYDE FLEVMRDFKS ARIDTAGVII RVKTLFSGYP ELILGFNAFL PKGFAIKLQD IDGGAAGDKK
0101: QPVDFMEAIN FVNKIKARFQ AQDHVYKAFL AILNMYRMHN KSIQDVYQEV AMLFHDHADL LEEFKHFLPD TSNAPQVLAA PKAVSAKQEA PAPPSASARN
0201: VQSIKRERPQ PSTAERDSSV DRPDLEHDPD RKRVDKEKDH KIDRDRKDHD KDAEYESKDL DGGLRKRKAL SKKLEGDTHQ GAASISASSY NDNDAMKSAY
0301: TQEFLFCEKV KEKLEPEAYQ EFLKCLHIYS QEIITRSELK NLVHDILQRY PELMTGFSEF LEHCENIDGF LDGVINKRQT SRTVKALDKE RDKGRAGEDR
0401: ERDAEKLSEK ERERLDKVSA LNSKEATTHK AAAFSAKEKY LCKPISELDL SNCQRCTPSY RLLPKNYPVP ASSCRTDLGI SVLNDHWVSV TSGSEDYSFK
0501: HMRKNQYEES LFRCEDDRFE LDMLLESVNV AIKRVEELIE KMQENSIKPD SPIRIDEHLT SLNLRCIERL YGDHGLDVMD VLRKNASVAL PVILTRLKQK
0601: QEEWSRCRSD FNKVWAEIYA KNYHKSLDHR SFYFKQQDTK NLSTRALLSE IKEINEKKRK EDDVLLAIAA GNRRPIVPNM SFEYVDSEIH EDVYQIIKYS
0701: CGEVCSSPDQ VDKVMRTWTT FVEPILGVQP RTLAVEDAVT VKQANGDESI PKEKAQSSRG LLANGVSEDA QNGFHDADRT VRRGEGPSNT SLHQTEQNQR
0801: RTNMELTSGT NSSRGNFSGS EAVVEAMGGN ETIPSIGRGE AGRPGSVPQK NSKVEREEGE LSPNGDFEEE NFGPLGNAAG DGASKPKEVS AGRARAAEFA
0901: GENDADADDE GDESAQRSTE SENASGSESG DGEECSREDN EDEEDADPDA KVESEGEAEG NTEAHDADGG MSLPFSERLH NTVRPLAKHV PTALQDHGGK
1001: FSRIFYGNDS FYVLFRLHQI LYERLLSAKT NSSTAEKKWR TSKDTSSPHQ YSKFMGALYN LIDGSSDNTK FEDDCRSIIG TQSYVLFTLD KLIYKVVKQL
1101: QAIAADEMDN KLLQLYIYEK SRSPGRFFDL VYHENARVLL HDESIYRFER RSNPTRLSVQ LMEYGHEKPE VTAVSIDPNF SSYLYDEYLS SISDSKVSED
1201: VFLERNKRKR GSSNGPQASL AVMDGFKVAN GLECKITCKS SKVSYVLDTE DFLFRMRNRR RISSGATPAA APGKADFVKA ADVVKAQRFH KFLLSRS
0101: QPVDFMEAIN FVNKIKARFQ AQDHVYKAFL AILNMYRMHN KSIQDVYQEV AMLFHDHADL LEEFKHFLPD TSNAPQVLAA PKAVSAKQEA PAPPSASARN
0201: VQSIKRERPQ PSTAERDSSV DRPDLEHDPD RKRVDKEKDH KIDRDRKDHD KDAEYESKDL DGGLRKRKAL SKKLEGDTHQ GAASISASSY NDNDAMKSAY
0301: TQEFLFCEKV KEKLEPEAYQ EFLKCLHIYS QEIITRSELK NLVHDILQRY PELMTGFSEF LEHCENIDGF LDGVINKRQT SRTVKALDKE RDKGRAGEDR
0401: ERDAEKLSEK ERERLDKVSA LNSKEATTHK AAAFSAKEKY LCKPISELDL SNCQRCTPSY RLLPKNYPVP ASSCRTDLGI SVLNDHWVSV TSGSEDYSFK
0501: HMRKNQYEES LFRCEDDRFE LDMLLESVNV AIKRVEELIE KMQENSIKPD SPIRIDEHLT SLNLRCIERL YGDHGLDVMD VLRKNASVAL PVILTRLKQK
0601: QEEWSRCRSD FNKVWAEIYA KNYHKSLDHR SFYFKQQDTK NLSTRALLSE IKEINEKKRK EDDVLLAIAA GNRRPIVPNM SFEYVDSEIH EDVYQIIKYS
0701: CGEVCSSPDQ VDKVMRTWTT FVEPILGVQP RTLAVEDAVT VKQANGDESI PKEKAQSSRG LLANGVSEDA QNGFHDADRT VRRGEGPSNT SLHQTEQNQR
0801: RTNMELTSGT NSSRGNFSGS EAVVEAMGGN ETIPSIGRGE AGRPGSVPQK NSKVEREEGE LSPNGDFEEE NFGPLGNAAG DGASKPKEVS AGRARAAEFA
0901: GENDADADDE GDESAQRSTE SENASGSESG DGEECSREDN EDEEDADPDA KVESEGEAEG NTEAHDADGG MSLPFSERLH NTVRPLAKHV PTALQDHGGK
1001: FSRIFYGNDS FYVLFRLHQI LYERLLSAKT NSSTAEKKWR TSKDTSSPHQ YSKFMGALYN LIDGSSDNTK FEDDCRSIIG TQSYVLFTLD KLIYKVVKQL
1101: QAIAADEMDN KLLQLYIYEK SRSPGRFFDL VYHENARVLL HDESIYRFER RSNPTRLSVQ LMEYGHEKPE VTAVSIDPNF SSYLYDEYLS SISDSKVSED
1201: VFLERNKRKR GSSNGPQASL AVMDGFKVAN GLECKITCKS SKVSYVLDTE DFLFRMRNRR RISSGATPAA APGKADFVKA ADVVKAQRFH KFLLSRS
0001: MVGGGSAQKL TTNDALAYLK AVKDKFQDQR GKYDEFLEVM KNFKSQRVDT AGVITRVKEL FKGHQELILG FNTFLPKGFE ITLQPEDGQP PLKKRVEFEE
0101: AISFVNKIKT RFQGDDRVYK SFLDILNMYR RDSKSITEVY QEVAILFRDH SDLLVEFTHF LPDTSATASI PSVKTSVRER GVSLADKKDR IITPHPDHDY
0201: GTEHIDQDRE RPIKKENKEH MRGTNKENEH RDARDFEPHS KKEQFLNKKQ KLHIRGDDPA EISNQSKLSG AVPSSSTYDE KGAMKSYSQD LAIVDRVKEK
0301: LNASEYQEFL RCLNLFSKEI ISRPELQSLV GNLIGVYPDL MDSFIEFLVQ CEKNEGLLSG ILTKKSLWSE GKYPQPSLDN DRDQEHKRDD GLRDRDHEKE
0401: RLEKAAANLK WAKPISELDL SNCEQCTPSY RLLPKNYPIS IASQKTEIGK LVLNDHWVSV TSGSEDYSFS HMRKNQYEES LFKCEDDRFE LDMLLESVNS
0501: TTKHVEELLT KINSNELKTN SPIRVEDHLT ALNLRCIERL YGDHGLDVMD VLKKNVSLAL PVILTRLKQK QEEWARCRSD FDKVWAEIYA KNYYKSLDHR
0601: SFYFKQQDSK KLSMKALLAE IKEITEKKRE DDSLLAFAAG NRLSISPDLE FDYPDHDLHE DLYQLIKYSC AEMCSTEQLD KVMKIWTTFV EQIFGVPSRP
0701: QGAEDQEDVV KSMNQNVKSG SSSAGESEGS PHNYASVADS RRSKSSRKAN EHSQLGQTSN SERDGAAGRT SDALCETAQH EKMLKNVVTS DEKPESKQAV
0801: SIERAHDSTA LAVDGLLDQS NGGSSIVHMT GHCNNNLKPV TCGTELELKM NDGNGPKLEV GNKKLLTNGI AVEITSDQEM AGTSKVEREE GELSPNGDFE
0901: EDNFAVYAKT DFETFSKAND STGNNISGDR SREGEPSCLE TRAENDAEGD ENAARSSEDS RNEYENGDVS GTESGGGEDP EDDLDNNNKG ESEGEAECMA
1001: DAHDAEENGS ALPVSARFLL HVKPLVKYVP SAIALHDKDK DSLKNSQVFY GNDSFYVLFR LHRILYERIL SAKVNSSSPE GKWRTSNTKN PTDSYARFMT
1101: ALYNLLDGTS DNAKFEDDCR AIIGTQSYIL FTLDKLIHKF IKHLQVVVAD EMDNKLLQLY FYEKSRRPET IFDAVYYDNT RVLLPDENIY RIECRLSTPA
1201: KLSIQLMCNG LDKPDVTSVS IDPTFAAYLH NDFLSIQPNA REDRRIYLNR NKRKVCREDE QLYSTDEVKI KNGLECKIAC GSSKVSYVLE TEDLLVRVKK
1301: RRKTLCHNQD SWRQNKNKSG NSPLLTSPDR AKLHSLSS
0101: AISFVNKIKT RFQGDDRVYK SFLDILNMYR RDSKSITEVY QEVAILFRDH SDLLVEFTHF LPDTSATASI PSVKTSVRER GVSLADKKDR IITPHPDHDY
0201: GTEHIDQDRE RPIKKENKEH MRGTNKENEH RDARDFEPHS KKEQFLNKKQ KLHIRGDDPA EISNQSKLSG AVPSSSTYDE KGAMKSYSQD LAIVDRVKEK
0301: LNASEYQEFL RCLNLFSKEI ISRPELQSLV GNLIGVYPDL MDSFIEFLVQ CEKNEGLLSG ILTKKSLWSE GKYPQPSLDN DRDQEHKRDD GLRDRDHEKE
0401: RLEKAAANLK WAKPISELDL SNCEQCTPSY RLLPKNYPIS IASQKTEIGK LVLNDHWVSV TSGSEDYSFS HMRKNQYEES LFKCEDDRFE LDMLLESVNS
0501: TTKHVEELLT KINSNELKTN SPIRVEDHLT ALNLRCIERL YGDHGLDVMD VLKKNVSLAL PVILTRLKQK QEEWARCRSD FDKVWAEIYA KNYYKSLDHR
0601: SFYFKQQDSK KLSMKALLAE IKEITEKKRE DDSLLAFAAG NRLSISPDLE FDYPDHDLHE DLYQLIKYSC AEMCSTEQLD KVMKIWTTFV EQIFGVPSRP
0701: QGAEDQEDVV KSMNQNVKSG SSSAGESEGS PHNYASVADS RRSKSSRKAN EHSQLGQTSN SERDGAAGRT SDALCETAQH EKMLKNVVTS DEKPESKQAV
0801: SIERAHDSTA LAVDGLLDQS NGGSSIVHMT GHCNNNLKPV TCGTELELKM NDGNGPKLEV GNKKLLTNGI AVEITSDQEM AGTSKVEREE GELSPNGDFE
0901: EDNFAVYAKT DFETFSKAND STGNNISGDR SREGEPSCLE TRAENDAEGD ENAARSSEDS RNEYENGDVS GTESGGGEDP EDDLDNNNKG ESEGEAECMA
1001: DAHDAEENGS ALPVSARFLL HVKPLVKYVP SAIALHDKDK DSLKNSQVFY GNDSFYVLFR LHRILYERIL SAKVNSSSPE GKWRTSNTKN PTDSYARFMT
1101: ALYNLLDGTS DNAKFEDDCR AIIGTQSYIL FTLDKLIHKF IKHLQVVVAD EMDNKLLQLY FYEKSRRPET IFDAVYYDNT RVLLPDENIY RIECRLSTPA
1201: KLSIQLMCNG LDKPDVTSVS IDPTFAAYLH NDFLSIQPNA REDRRIYLNR NKRKVCREDE QLYSTDEVKI KNGLECKIAC GSSKVSYVLE TEDLLVRVKK
1301: RRKTLCHNQD SWRQNKNKSG NSPLLTSPDR AKLHSLSS
Arabidopsis Description
SNL3SIN3-like 3 [Source:TAIR;Acc:AT1G24190]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.