Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra016241.1-P | Field mustard | nucleus | 97.36 | 97.44 |
| CDY38781 | Canola | nucleus | 97.36 | 97.44 |
| CDX68358 | Canola | nucleus | 85.19 | 85.59 |
| CDY23527 | Canola | nucleus | 85.27 | 85.01 |
| AT1G70060.2 | Thale cress | nucleus | 83.33 | 81.07 |
| CDY23529 | Canola | cytosol | 8.6 | 70.25 |
| CDY48380 | Canola | cytosol | 8.45 | 68.99 |
| CDY23528 | Canola | cytosol | 7.52 | 62.58 |
| CDY48381 | Canola | cytosol | 7.52 | 62.58 |
| CDY64434 | Canola | nucleus | 2.79 | 58.06 |
| CDY31594 | Canola | nucleus | 17.13 | 55.67 |
| VIT_01s0026g01010.t01 | Wine grape | nucleus | 62.4 | 55.48 |
| CDY55066 | Canola | cytosol | 17.05 | 55.28 |
| KRH69432 | Soybean | nucleus | 60.31 | 54.41 |
| KRH74716 | Soybean | nucleus | 54.96 | 53.92 |
| CDY14679 | Canola | cytosol, mitochondrion, nucleus | 3.72 | 53.33 |
| GSMUA_Achr1P20690_001 | Banana | nucleus | 55.04 | 52.95 |
| CDY16234 | Canola | cytosol, mitochondrion, nucleus | 3.64 | 52.22 |
| CDY30912 | Canola | nucleus | 42.17 | 51.81 |
| TraesCS1B01G002000.1 | Wheat | nucleus | 50.7 | 50.42 |
| GSMUA_Achr9P00800_001 | Banana | nucleus | 54.19 | 50.07 |
| CDY37976 | Canola | nucleus | 38.22 | 49.9 |
| TraesCS1A01G002700.1 | Wheat | nucleus | 51.24 | 49.62 |
| HORVU1Hr1G000290.3 | Barley | nucleus | 51.16 | 49.59 |
| Os01t0109700-01 | Rice | nucleus | 50.85 | 49.47 |
| CDX93425 | Canola | nucleus | 38.84 | 49.31 |
| CDY24499 | Canola | nucleus | 42.33 | 49.23 |
| TraesCS1D01G004900.4 | Wheat | nucleus | 51.24 | 49.15 |
| CDY40291 | Canola | cytoskeleton, cytosol, nucleus | 3.26 | 48.84 |
| CDY28457 | Canola | cytoskeleton, cytosol, nucleus | 3.18 | 48.81 |
| GSMUA_Achr2P09580_001 | Banana | nucleus | 51.16 | 48.46 |
| GSMUA_Achr11P... | Banana | nucleus | 51.63 | 48.33 |
| EES00449 | Sorghum | nucleus | 53.49 | 47.88 |
| Zm00001d008429_P019 | Maize | nucleus | 53.33 | 47.68 |
| Zm00001d040123_P007 | Maize | nucleus | 52.95 | 47.6 |
| CDY33612 | Canola | nucleus | 42.25 | 47.27 |
| CDY06480 | Canola | cytosol | 8.6 | 47.03 |
| CDY45153 | Canola | nucleus | 35.27 | 47.0 |
| TraesCSU01G039900.1 | Wheat | nucleus | 52.02 | 46.96 |
| CDY67989 | Canola | nucleus | 5.66 | 46.79 |
| TraesCS3D01G007600.2 | Wheat | nucleus, plastid | 50.0 | 46.77 |
| CDX78604 | Canola | nucleus | 48.68 | 46.52 |
| TraesCS3B01G005900.1 | Wheat | nucleus | 51.71 | 46.51 |
| KXG20992 | Sorghum | nucleus | 44.88 | 46.39 |
| CDX70587 | Canola | nucleus | 48.45 | 46.13 |
| CDY08302 | Canola | cytosol | 9.15 | 46.09 |
| CDX91007 | Canola | nucleus | 46.28 | 45.12 |
| Zm00001d035776_P004 | Maize | nucleus | 44.11 | 45.12 |
| Os05t0100500-01 | Rice | plastid | 12.87 | 45.11 |
| CDY31595 | Canola | nucleus | 24.19 | 45.09 |
| CDY71516 | Canola | cytosol, mitochondrion, nucleus | 9.07 | 45.0 |
| CDX85568 | Canola | nucleus | 46.59 | 44.98 |
| CDY55065 | Canola | nucleus | 24.26 | 44.78 |
| CDY08301 | Canola | cytosol | 9.53 | 44.24 |
| CDY70453 | Canola | cytosol | 11.47 | 44.18 |
| HORVU3Hr1G000540.2 | Barley | plastid | 51.63 | 43.22 |
| CDY28683 | Canola | mitochondrion, nucleus | 44.88 | 43.02 |
| CDY42981 | Canola | mitochondrion | 5.19 | 41.88 |
| CDY66875 | Canola | mitochondrion | 5.19 | 41.88 |
| CDY03764 | Canola | cytosol | 5.04 | 40.12 |
| CDY42984 | Canola | cytosol, mitochondrion, nucleus | 4.88 | 39.38 |
| CDY42979 | Canola | cytosol, mitochondrion, nucleus | 4.42 | 39.31 |
| CDY28682 | Canola | nucleus | 37.44 | 38.98 |
| Zm00001d041450_P002 | Maize | nucleus | 18.84 | 30.92 |
| CDY42983 | Canola | nucleus | 3.88 | 30.86 |
| CDY64433 | Canola | cytosol | 5.66 | 27.55 |
| CDY03763 | Canola | cytosol | 5.58 | 25.26 |
| Zm00001d041453_P001 | Maize | nucleus | 22.4 | 25.02 |
| CDY42986 | Canola | cytosol | 3.8 | 23.45 |
| CDY16235 | Canola | mitochondrion | 4.5 | 17.26 |
| CDY14678 | Canola | cytosol | 4.34 | 16.18 |
Protein Annotations
| Gene3D:1.20.1160.11 | MapMan:12.3.2.4.2 | GO:A0A078FB72 | UniProt:A0A078FB72 | EnsemblPlants:CDY11625 | ProteinID:CDY11625 |
| ProteinID:CDY11625.1 | ncoils:Coil | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| EnsemblPlantsGene:GSBRNA2T00049748001 | InterPro:HDAC_interact_dom | InterPro:IPR003822 | InterPro:PAH | InterPro:PAH_sf | PFAM:PF02671 |
| PFAM:PF08295 | PFAM:PF16879 | PFscan:PS51477 | PANTHER:PTHR12346 | PANTHER:PTHR12346:SF21 | SMART:SM00761 |
| SUPFAM:SSF47762 | InterPro:Sin3_C | UniParc:UPI0004EF4A4C | SEG:seg | : | : |
Description
BnaC06g31140DBnaC06g31140D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FB72]
Coordinates
chrLK032012:-:555140..561233
Molecular Weight (calculated)
146586.0 Da
IEP (calculated)
5.151
GRAVY (calculated)
-0.765
Length
1290 amino acids
Sequence
(BLAST)
(BLAST)
0001: MMVGGGSAQK LTTNDALAYL KAVKDKFQDK REKYDEFLEV MKDFKAQRVD TSGVILRVKE LFKGNRELIL GFNTFLPKGF EITLLPEEDD QPPPKKPVEF
0101: EEAISFVNKI KTRFQGDDRV YKSFLDILNM YRKENKSITE VYQEVAILFR DHHDLLVEFT HFLPDTSGTA STNIDPAKMS VRDRGSIKSL PTMRDSDKKD
0201: RINDLKTEHM DIDHERSLLK ESKEDIRRID KKNDYMDGRD MKGDGIDSQK EQFLLGKKKL TLRDNDSPGI SNQAREGGDK FRGDIATSST YDDKGHVQEL
0301: AFVDRVKAKL KTSEYQEFLR CLNLFSKEII SQPELQSLVG DLIGVYPDLI EAFRVFLVQC EKNDGLLSGI VTKKSLWSDG KVPQPTKSQD KDTEREREKA
0401: ERFRERDREK ERLEKAAASQ KWAKPINELD LSNCEQCTPS YRLLPKNYPI PIASQKMEIG SQVLNDHWVS VTSGSEDYSF KHMRKNQYEE SLFRCEDDRF
0501: ELDMLLESVN SATNRVEELL AKINSNELKT DTPICIEDHL TALNIRCIER LYGDHGLDVL DLLKKNAYLA LPVILTRLKQ KQEEWIRCRS DFNKVWADIY
0601: TKNYHRSLDH RSFYFKQQDS KNLSTKALLA EIKEIAEKKR AEDDALLALA AGNRRTVCSN MSFDYPDPDL HEDLYQLIKY SCGEMCSTEQ LDKVMKVWTE
0701: FLEPMFGVPS RPQGAEDLED AVKSTTNLSE CSPQNVVTMA NNGTRKASDL DRDVTAGKTA DALLRDNAKK DKMPKNLTTP DERPETKQAV SIERVHSSTT
0801: PLVDGLLSQR NGVSNSNPKP TALASGMEME MKPNHVNGPR VEVFPNGTVA ETSTNQRPNE VSAKVEREEG ELSPTGEFEE DNFAENDLEP LSNGKDGSGE
0901: NDGNAVDEGD ESAPRSSDVS GNTSQNGDVS GTESGDGEGC YPEDDNKAES EGEAEEEEEE EGMSDAHDDA KGDNRPVLPI SVRNLLHVKP LAKYVPPALC
1001: DKDNKDVTNS RVFYGNDSCY VLFRLHQILY DRILSAKINS SCPERMWKTS NSANPADSYS RFMNALYNLL DGTSDNPKFE DDCRAIIGTQ SYVLFTLDKL
1101: IYKLIKHLQA VAADEMDNKL HQLYLYEKSR KPEKYLDAVY YDNARVLLPD EDIYRIECEL STPTKLSIQL LNYGHDKPDV TSISMDQTFA AYLHNKFLSS
1201: GPNVKENPRI YLNRNKRKNG EDQVKISNGL ECKITCSSSK VSYVFDTEDV LHRVKRKKVL NQSRQDPVVA SGSSIRQRRI QSYQKLLTGQ
0101: EEAISFVNKI KTRFQGDDRV YKSFLDILNM YRKENKSITE VYQEVAILFR DHHDLLVEFT HFLPDTSGTA STNIDPAKMS VRDRGSIKSL PTMRDSDKKD
0201: RINDLKTEHM DIDHERSLLK ESKEDIRRID KKNDYMDGRD MKGDGIDSQK EQFLLGKKKL TLRDNDSPGI SNQAREGGDK FRGDIATSST YDDKGHVQEL
0301: AFVDRVKAKL KTSEYQEFLR CLNLFSKEII SQPELQSLVG DLIGVYPDLI EAFRVFLVQC EKNDGLLSGI VTKKSLWSDG KVPQPTKSQD KDTEREREKA
0401: ERFRERDREK ERLEKAAASQ KWAKPINELD LSNCEQCTPS YRLLPKNYPI PIASQKMEIG SQVLNDHWVS VTSGSEDYSF KHMRKNQYEE SLFRCEDDRF
0501: ELDMLLESVN SATNRVEELL AKINSNELKT DTPICIEDHL TALNIRCIER LYGDHGLDVL DLLKKNAYLA LPVILTRLKQ KQEEWIRCRS DFNKVWADIY
0601: TKNYHRSLDH RSFYFKQQDS KNLSTKALLA EIKEIAEKKR AEDDALLALA AGNRRTVCSN MSFDYPDPDL HEDLYQLIKY SCGEMCSTEQ LDKVMKVWTE
0701: FLEPMFGVPS RPQGAEDLED AVKSTTNLSE CSPQNVVTMA NNGTRKASDL DRDVTAGKTA DALLRDNAKK DKMPKNLTTP DERPETKQAV SIERVHSSTT
0801: PLVDGLLSQR NGVSNSNPKP TALASGMEME MKPNHVNGPR VEVFPNGTVA ETSTNQRPNE VSAKVEREEG ELSPTGEFEE DNFAENDLEP LSNGKDGSGE
0901: NDGNAVDEGD ESAPRSSDVS GNTSQNGDVS GTESGDGEGC YPEDDNKAES EGEAEEEEEE EGMSDAHDDA KGDNRPVLPI SVRNLLHVKP LAKYVPPALC
1001: DKDNKDVTNS RVFYGNDSCY VLFRLHQILY DRILSAKINS SCPERMWKTS NSANPADSYS RFMNALYNLL DGTSDNPKFE DDCRAIIGTQ SYVLFTLDKL
1101: IYKLIKHLQA VAADEMDNKL HQLYLYEKSR KPEKYLDAVY YDNARVLLPD EDIYRIECEL STPTKLSIQL LNYGHDKPDV TSISMDQTFA AYLHNKFLSS
1201: GPNVKENPRI YLNRNKRKNG EDQVKISNGL ECKITCSSSK VSYVFDTEDV LHRVKRKKVL NQSRQDPVVA SGSSIRQRRI QSYQKLLTGQ
0001: MVGGSSAQKL TTNDALAYLK AVKDKFQDKR DKYDEFLEVM KDFKAQRVDT TGVILRVKEL FKGNRELILG FNTFLPKGFE ITLRPEDDQP AAPKKPVEFE
0101: EAISFVNKIK TRFQGDDRVY KSFLDILNMY RKENKSITEV YHEVAILFRD HHDLLGEFTH FLPDTSATAS TNDSVKVPVR DRGIKSLPTM RQIDLDKKDR
0201: IITSHPNRAL KTENMDVDHE RSLLKDSKEE VRRIDKKNDF MDDRDRKDYR GLDHDSHKEH FFNSKKKLIR KDDDSAEMSD QAREGDKFSG AIPSSSTYDE
0301: KGHSQELAFV DRVKAKLDTA DNQEFLRCLN LYSKEIISQP ELQSLVSDLI GVYPDLMDAF KVFLAQCDKN DGLLSGIVSK KSLWSEGKCP QPTKSLDKDT
0401: DREREKIERY RERDREKERL EKVAASQKWA KPISELDLSN CEQCTPSYRR LPKNYPIPIA SQKMEIGSQV LNDHWVSVTS GSEDYSFKHM RKNQYEESLF
0501: KCEDDRFELD MLLESVISAT NRVEELLAKI NSNELKTDTP ICIEDHLTAL NLRCIERLYS DHGLDVLDLL KKNAYLALPV ILTRLKQKQE EWARCRTEFN
0601: KVWADIYTKN YHRSLDHRSF YFKQQDSKNL STKALLAEIK EISEKKRGED DALLALAAGN RRTISSNMSF DYPDPDLHED LYQLIKYSCG EMCSTEQLDK
0701: VMKVWTEFLE PIFGVPSRPQ GAEDREDAVK STNHDREDQE DAVSPQNGAS IANSMRSNGP RKVNESNQVR QASELDKDVT SSKTSDALLS CDNTQNDKMP
0801: KNLTTPDERA ETKQAVSIER AHNSNALPLD GLLPQRNGKI SSLSVAGLSN SNPKPALTSG TEELKPNYVN GPRVEIGDNP VIPNGTVAEW FAGEAKVERE
0901: EGELSPTGDF EEDNYAVHGE NDMEALSKSK ENDATADDAS APRSSDGSGN TSHNGDVSGT DSGDGEDCYR EDDIDHNKVE SEGEAEEGMS DGHDDTEGDM
1001: PVLSISVKNL LHVKPLAKYV PPALYDKDND DSRKNSQVFY GNDSFYVLFR LHQILYDRIL SAKINSSSPD RKWKTSNPTN PADSYARIMD ALYNLLDGTS
1101: DNSKFEDDCR AIIGTQSYVL FTLDKLIYKL IKHLQAVAAD EMDNKLQQLY AYEKSRKPEK FLDAVYYENA LVLLPDEDIY RIECEQSTPS KLSIQLLDYG
1201: HDKPDVTSIS MDPTFAAYLH NVFLSYQPNA KENPRIYLKR NKRKNGGDDE LCTTDEVKII NGLECKITCS SSKVSYVLDT EDVLHRAKRR KLLNQSGLPL
1301: AHDSVCSGSL IRQRRTQRYQ KLLTGQ
0101: EAISFVNKIK TRFQGDDRVY KSFLDILNMY RKENKSITEV YHEVAILFRD HHDLLGEFTH FLPDTSATAS TNDSVKVPVR DRGIKSLPTM RQIDLDKKDR
0201: IITSHPNRAL KTENMDVDHE RSLLKDSKEE VRRIDKKNDF MDDRDRKDYR GLDHDSHKEH FFNSKKKLIR KDDDSAEMSD QAREGDKFSG AIPSSSTYDE
0301: KGHSQELAFV DRVKAKLDTA DNQEFLRCLN LYSKEIISQP ELQSLVSDLI GVYPDLMDAF KVFLAQCDKN DGLLSGIVSK KSLWSEGKCP QPTKSLDKDT
0401: DREREKIERY RERDREKERL EKVAASQKWA KPISELDLSN CEQCTPSYRR LPKNYPIPIA SQKMEIGSQV LNDHWVSVTS GSEDYSFKHM RKNQYEESLF
0501: KCEDDRFELD MLLESVISAT NRVEELLAKI NSNELKTDTP ICIEDHLTAL NLRCIERLYS DHGLDVLDLL KKNAYLALPV ILTRLKQKQE EWARCRTEFN
0601: KVWADIYTKN YHRSLDHRSF YFKQQDSKNL STKALLAEIK EISEKKRGED DALLALAAGN RRTISSNMSF DYPDPDLHED LYQLIKYSCG EMCSTEQLDK
0701: VMKVWTEFLE PIFGVPSRPQ GAEDREDAVK STNHDREDQE DAVSPQNGAS IANSMRSNGP RKVNESNQVR QASELDKDVT SSKTSDALLS CDNTQNDKMP
0801: KNLTTPDERA ETKQAVSIER AHNSNALPLD GLLPQRNGKI SSLSVAGLSN SNPKPALTSG TEELKPNYVN GPRVEIGDNP VIPNGTVAEW FAGEAKVERE
0901: EGELSPTGDF EEDNYAVHGE NDMEALSKSK ENDATADDAS APRSSDGSGN TSHNGDVSGT DSGDGEDCYR EDDIDHNKVE SEGEAEEGMS DGHDDTEGDM
1001: PVLSISVKNL LHVKPLAKYV PPALYDKDND DSRKNSQVFY GNDSFYVLFR LHQILYDRIL SAKINSSSPD RKWKTSNPTN PADSYARIMD ALYNLLDGTS
1101: DNSKFEDDCR AIIGTQSYVL FTLDKLIYKL IKHLQAVAAD EMDNKLQQLY AYEKSRKPEK FLDAVYYENA LVLLPDEDIY RIECEQSTPS KLSIQLLDYG
1201: HDKPDVTSIS MDPTFAAYLH NVFLSYQPNA KENPRIYLKR NKRKNGGDDE LCTTDEVKII NGLECKITCS SSKVSYVLDT EDVLHRAKRR KLLNQSGLPL
1301: AHDSVCSGSL IRQRRTQRYQ KLLTGQ
Arabidopsis Description
SNL4Paired amphipathic helix protein Sin3-like 4 [Source:UniProtKB/Swiss-Prot;Acc:O04539]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.