Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra006276.1-P | Field mustard | nucleus | 96.24 | 96.88 |
| CDX78604 | Canola | nucleus | 96.24 | 96.59 |
| CDX85568 | Canola | nucleus | 83.54 | 84.73 |
| CDX91007 | Canola | nucleus | 82.66 | 84.66 |
| AT5G15020.1 | Thale cress | nucleus | 84.87 | 84.13 |
| CDY64434 | Canola | nucleus | 3.76 | 82.26 |
| CDY28683 | Canola | mitochondrion, nucleus | 67.97 | 68.42 |
| KRH18559 | Soybean | nucleus | 23.62 | 68.09 |
| CDY28682 | Canola | nucleus | 58.45 | 63.92 |
| CDY23529 | Canola | cytosol | 7.23 | 62.03 |
| CDY48380 | Canola | cytosol | 7.16 | 61.39 |
| KRG93437 | Soybean | nucleus | 62.14 | 60.06 |
| CDY70453 | Canola | cytosol | 14.76 | 59.7 |
| VIT_14s0066g02330.t01 | Wine grape | nucleus | 60.0 | 58.7 |
| KRH18561 | Soybean | nucleus | 38.01 | 57.1 |
| CDY71516 | Canola | cytosol, mitochondrion, nucleus | 10.85 | 56.54 |
| Solyc02g087380.1.1 | Tomato | nucleus, plastid | 5.68 | 56.2 |
| Solyc02g087370.1.1 | Tomato | cytosol | 7.9 | 55.73 |
| Solyc02g087360.2.1 | Tomato | nucleus | 53.95 | 54.43 |
| Solyc02g067570.2.1 | Tomato | nucleus | 54.02 | 54.3 |
| CDY23528 | Canola | cytosol | 6.2 | 54.19 |
| CDY48381 | Canola | cytosol | 6.2 | 54.19 |
| CDY31594 | Canola | nucleus | 15.87 | 54.16 |
| CDY55066 | Canola | cytosol | 15.79 | 53.77 |
| PGSC0003DMT400003538 | Potato | nucleus | 53.65 | 53.57 |
| CDY06480 | Canola | cytosol | 8.71 | 50.0 |
| CDY16234 | Canola | cytosol, mitochondrion, nucleus | 3.25 | 48.89 |
| CDY14679 | Canola | cytosol, mitochondrion, nucleus | 3.25 | 48.89 |
| CDY11625 | Canola | nucleus | 46.13 | 48.45 |
| CDX68358 | Canola | nucleus | 45.9 | 48.44 |
| CDY08302 | Canola | cytosol | 9.15 | 48.44 |
| CDY23527 | Canola | nucleus | 46.13 | 48.3 |
| CDY30912 | Canola | nucleus | 37.42 | 48.29 |
| CDY38781 | Canola | nucleus | 45.9 | 48.25 |
| CDY37976 | Canola | nucleus | 34.54 | 47.37 |
| CDY24499 | Canola | nucleus | 38.6 | 47.16 |
| CDY40291 | Canola | cytoskeleton, cytosol, nucleus | 2.95 | 46.51 |
| CDX93425 | Canola | nucleus | 34.83 | 46.46 |
| CDY08301 | Canola | cytosol | 9.52 | 46.4 |
| CDY67989 | Canola | nucleus | 5.31 | 46.15 |
| CDY33612 | Canola | nucleus | 38.82 | 45.62 |
| CDY28457 | Canola | cytoskeleton, cytosol, nucleus | 2.8 | 45.24 |
| CDY45153 | Canola | nucleus | 31.51 | 44.11 |
| PGSC0003DMT400003545 | Potato | cytosol, mitochondrion | 16.09 | 42.58 |
| CDY31595 | Canola | nucleus | 21.4 | 41.91 |
| CDY55065 | Canola | nucleus | 21.18 | 41.06 |
| CDY66875 | Canola | mitochondrion | 4.8 | 40.62 |
| CDY42981 | Canola | mitochondrion | 4.8 | 40.62 |
| CDY03764 | Canola | cytosol | 4.72 | 39.51 |
| Solyc02g087390.1.1 | Tomato | cytosol | 14.83 | 39.49 |
| CDY42984 | Canola | cytosol, mitochondrion, nucleus | 4.58 | 38.75 |
| CDY42979 | Canola | cytosol, mitochondrion, nucleus | 4.06 | 37.93 |
| CDY64433 | Canola | cytosol | 6.86 | 35.09 |
| CDY42983 | Canola | nucleus | 3.84 | 32.1 |
| CDY03763 | Canola | cytosol | 5.46 | 25.96 |
| CDY42986 | Canola | cytosol | 3.84 | 24.88 |
| CDY16235 | Canola | mitochondrion | 5.02 | 20.24 |
| CDY14678 | Canola | cytosol | 4.87 | 19.08 |
Protein Annotations
| Gene3D:1.20.1160.11 | MapMan:12.3.2.4.2 | GO:A0A078C1H2 | EnsemblPlants:CDX70587 | ProteinID:CDX70587 | ProteinID:CDX70587.1 |
| ncoils:Coil | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00140429001 | InterPro:HDAC_interact_dom | InterPro:IPR003822 | InterPro:PAH | InterPro:PAH_sf |
| PFAM:PF02671 | PFAM:PF08295 | PFAM:PF16879 | PFscan:PS51477 | PANTHER:PTHR12346 | PANTHER:PTHR12346:SF21 |
| SMART:SM00761 | SUPFAM:SSF47762 | InterPro:Sin3_C | UniParc:UPI0004EEE791 | SEG:seg | : |
Description
BnaC03g06710D
Coordinates
chrLK031791:-:1114072..1120873
Molecular Weight (calculated)
154219.0 Da
IEP (calculated)
5.175
GRAVY (calculated)
-0.804
Length
1355 amino acids
Sequence
(BLAST)
(BLAST)
0001: MKRIRDDVYS SGSQFKRPLP SSRGESYVQS PVPGDGGVNS QKLTTDDALS YLKDVKEMFQ DQRDKYDMFL EVMKDFKAQR TDTSGVIARV KELFKGHNNL
0101: IFGFNTFLPK GFEITLDEVE EEAPPKKTVE FEEAISFVNK IKKRFQNDED VYKSFLEILN MYRKDDKDIT EVYNEVSALF EDHLDLLEEF TRFLPESLAA
0201: HSAAQLIRSQ AQRYRDRGSG PPLVRPMLIE KDRRRERAVA SRGDRDHSVD RSDLNDDKAM VKMHREPKKR VDKENRERER ERERERERER RSRDLDDAEA
0301: EQDNLHHFSE KRKSSRRTEG FEAYSGPASH SEKNNLKSMY NQAFVFCEKV KERLCSQDDY QTFLKCLNIF SNGIIHRKEL QNLVSDLLGK FPDLMDEFNQ
0401: FFERCESNDG FQHLAGVMSK KSLSSEERLS RPVKGEEKET EREHKRDLDA AKEKERPNDK YMGKSIQELD LSDCERCTPS YRLLPSDYPI PSVRHRQKLG
0501: AAVLNDHWVS VTSGSEDYSF KHMRRNQYEE SLFRCEDDRF ELDMLLESVG SAAKSAEELL NNIIEKKISI EGSFRVEDHF TALNLRCIER LYGDHGLDVT
0601: DLIRKNPTAA LPVILTRLKQ KQEEWTKCRE DFNAVWADVY AKNHYKSLDH RSFYFKQQDS KNLSAKALVT EIKDLKEKSQ EEDDVLLSVA AGHRQPIIPH
0701: FEYEYLDRTI HEDLFKLVQF SCEEICSTKE QIGKVLRLWK SFLEMMLGVP PRAKGSNSVE DVVETKHHGA LTSGEVNVSS DSTNLVSRQL KFAANGDEYA
0801: SSGVSKHGAT GLLKRDSSAK ENCKDGEPAN KDVATCSAVK PQKDQENGNG ADKRFGDVDD RVATFPSGVE NNIGKVGSGD SSGSRGILSK QGDAIENADT
0901: IVIANGVLPD ASKANSNYDE PGGPSNVEKE EGELSPIGDS EDNFVVYEDR DLKTTAKPEH SVEAEGENDD ADDEDGDDAS EGGEDASGTE SIGDECSQDG
1001: NGMEEEGEHD EIDGKAESEG EAEGMDSHLI EEDNRLLPLS ERVLLSVKPL SKHVAAAALL DERQKDSRVF YGNDDFYVLF RLHRTLYERI LSAKTYCTGS
1101: ELNRRNTKDT SSPDPYARFM SALFSLLNGS AESSKFEDEC RAIIGNQSYV LFTLEKLIYK LVKQLQAVVA DDMDNKLLQL YEYEKSRKPG RVIDSVYYEN
1201: ARILLHEENI YRLECSSSPS RLSIQLMDSI IEKPEAYAVS MDPTFASYLQ KEFLSNSSGK KVAPQAIVLK RNMRGYSGLD DLAVACKAME GVEVINGLGC
1301: KMSCSSYKIS YVLDTEDFFH RKKKKQKKPS HEKSSSEQRK LYRVERFHKF LSASR
0101: IFGFNTFLPK GFEITLDEVE EEAPPKKTVE FEEAISFVNK IKKRFQNDED VYKSFLEILN MYRKDDKDIT EVYNEVSALF EDHLDLLEEF TRFLPESLAA
0201: HSAAQLIRSQ AQRYRDRGSG PPLVRPMLIE KDRRRERAVA SRGDRDHSVD RSDLNDDKAM VKMHREPKKR VDKENRERER ERERERERER RSRDLDDAEA
0301: EQDNLHHFSE KRKSSRRTEG FEAYSGPASH SEKNNLKSMY NQAFVFCEKV KERLCSQDDY QTFLKCLNIF SNGIIHRKEL QNLVSDLLGK FPDLMDEFNQ
0401: FFERCESNDG FQHLAGVMSK KSLSSEERLS RPVKGEEKET EREHKRDLDA AKEKERPNDK YMGKSIQELD LSDCERCTPS YRLLPSDYPI PSVRHRQKLG
0501: AAVLNDHWVS VTSGSEDYSF KHMRRNQYEE SLFRCEDDRF ELDMLLESVG SAAKSAEELL NNIIEKKISI EGSFRVEDHF TALNLRCIER LYGDHGLDVT
0601: DLIRKNPTAA LPVILTRLKQ KQEEWTKCRE DFNAVWADVY AKNHYKSLDH RSFYFKQQDS KNLSAKALVT EIKDLKEKSQ EEDDVLLSVA AGHRQPIIPH
0701: FEYEYLDRTI HEDLFKLVQF SCEEICSTKE QIGKVLRLWK SFLEMMLGVP PRAKGSNSVE DVVETKHHGA LTSGEVNVSS DSTNLVSRQL KFAANGDEYA
0801: SSGVSKHGAT GLLKRDSSAK ENCKDGEPAN KDVATCSAVK PQKDQENGNG ADKRFGDVDD RVATFPSGVE NNIGKVGSGD SSGSRGILSK QGDAIENADT
0901: IVIANGVLPD ASKANSNYDE PGGPSNVEKE EGELSPIGDS EDNFVVYEDR DLKTTAKPEH SVEAEGENDD ADDEDGDDAS EGGEDASGTE SIGDECSQDG
1001: NGMEEEGEHD EIDGKAESEG EAEGMDSHLI EEDNRLLPLS ERVLLSVKPL SKHVAAAALL DERQKDSRVF YGNDDFYVLF RLHRTLYERI LSAKTYCTGS
1101: ELNRRNTKDT SSPDPYARFM SALFSLLNGS AESSKFEDEC RAIIGNQSYV LFTLEKLIYK LVKQLQAVVA DDMDNKLLQL YEYEKSRKPG RVIDSVYYEN
1201: ARILLHEENI YRLECSSSPS RLSIQLMDSI IEKPEAYAVS MDPTFASYLQ KEFLSNSSGK KVAPQAIVLK RNMRGYSGLD DLAVACKAME GVEVINGLGC
1301: KMSCSSYKIS YVLDTEDFFH RKKKKQKKPS HEKSSSEQRK LYRVERFHKF LSASR
0001: MKRIRDDIYA TGSQFKRPLG SSRGESYEQS PITGGGSIGE GGINTQKLTT DDALTYLKEV KEMFQDQRDK YDMFLEVMKD FKAQKTDTSG VISRVKELFK
0101: GHNNLIFGFN TFLPKGFEIT LDDVEAPSKK TVEFEEAISF VNKIKTRFQH NELVYKSFLE ILNMYRKDNK DITEVYNEVS TLFEDHSDLL EEFTRFLPDS
0201: LAPHTEAQLL RSQAQRYDDR GSGPPLVRRM FMEKDRRRER TVASRGDRDH SVDRSDLNDD KSMVKMHRDQ RKRVDKDNRE RRSRDLEDGE AEQDNLQHFS
0301: EKRKSSRRME GFEAYSGPAS HSEKNNLKSM YNQAFLFCEK VKERLCSQDD YQAFLKCLNM FSNGIIQRKD LQNLVSDVLG KFPDLMDEFN QFFERCESID
0401: GFQHLAGVMS KKSLGSEENL SRSVKGEEKD REHKRDVEAA KEKERSKDKY MGKSIQELDL SDCERCTPSY RLLPPDYPIP SVRHRQKSGA AVLNDHWVSV
0501: TSGSEDYSFK HMRRNQYEES LFRCEDDRFE LDMLLESVGS AAKSAEELLN IIIDKKISFE GSFRIEDHFT ALNLRCIERL YGDHGLDVTD LIRKNPAAAL
0601: PVILTRLKQK QDEWTKCREG FNVVWADVYA KNHYKSLDHR SFYFKQQDSK NLSAKALVSE VKDLKEKSQK EDDVVLSISA GYRQPIIPHL EYDYLDRAIH
0701: EDLFKLVQFS CEEICSTKEQ TGKVLKLWAN FLELMLDVAP RAKGSDSVED VVETQHQRAF TSGEANESSD AISLVSRQLK FATNGDVHAS SGVSKHGETG
0801: LLNRDSSGKE NLKDGDLANK DVATCAEKPQ KDQEIGNGAA KRSGDVDERV ATSSSSFPSG VENNNGKVGS RDSSGSRGIL SKPSEAIDKV DSIQHTQGVD
0901: IGRIIVLGNG LQSDTSKANS NYDESGGPSK IEKEEGELSP VGDSEDNFVV YEDRELKATA KTEHSVEAEG ENDEDADDED GDDASEAGED ASGTESIGDE
1001: CSQDDNGVEE EGEHDEIDGK AESEGEAEGM ESHLIEDKGL FPSSERVLLS VKPLSKHIAA AALVDEKKKD SRVFYGNDDF YVLFRLHRIL YERILSAKTY
1101: CSGSEMKLRN TKDTCSPDPY ARFMNALFSL LNGSAENSKF EDECRAIIGN QSYVLFTLEK LIYKLVKQLQ AVVADDMDNK LLQLYEYENS RRPGRVFDSV
1201: YYENARILLH EENIYRLECS SSPSRLSIQL MDNIIEKPDA YAVSMEPTFT SYLQNEFLSN SSGKKELQDI VLQRNMRGYN GLDDLAVACK AMEGVQVING
1301: LECKMSCSSY KISYVLDTED FFHRKKKQKK SNNLSLAKLS QNRIARFHKF LSASR
0101: GHNNLIFGFN TFLPKGFEIT LDDVEAPSKK TVEFEEAISF VNKIKTRFQH NELVYKSFLE ILNMYRKDNK DITEVYNEVS TLFEDHSDLL EEFTRFLPDS
0201: LAPHTEAQLL RSQAQRYDDR GSGPPLVRRM FMEKDRRRER TVASRGDRDH SVDRSDLNDD KSMVKMHRDQ RKRVDKDNRE RRSRDLEDGE AEQDNLQHFS
0301: EKRKSSRRME GFEAYSGPAS HSEKNNLKSM YNQAFLFCEK VKERLCSQDD YQAFLKCLNM FSNGIIQRKD LQNLVSDVLG KFPDLMDEFN QFFERCESID
0401: GFQHLAGVMS KKSLGSEENL SRSVKGEEKD REHKRDVEAA KEKERSKDKY MGKSIQELDL SDCERCTPSY RLLPPDYPIP SVRHRQKSGA AVLNDHWVSV
0501: TSGSEDYSFK HMRRNQYEES LFRCEDDRFE LDMLLESVGS AAKSAEELLN IIIDKKISFE GSFRIEDHFT ALNLRCIERL YGDHGLDVTD LIRKNPAAAL
0601: PVILTRLKQK QDEWTKCREG FNVVWADVYA KNHYKSLDHR SFYFKQQDSK NLSAKALVSE VKDLKEKSQK EDDVVLSISA GYRQPIIPHL EYDYLDRAIH
0701: EDLFKLVQFS CEEICSTKEQ TGKVLKLWAN FLELMLDVAP RAKGSDSVED VVETQHQRAF TSGEANESSD AISLVSRQLK FATNGDVHAS SGVSKHGETG
0801: LLNRDSSGKE NLKDGDLANK DVATCAEKPQ KDQEIGNGAA KRSGDVDERV ATSSSSFPSG VENNNGKVGS RDSSGSRGIL SKPSEAIDKV DSIQHTQGVD
0901: IGRIIVLGNG LQSDTSKANS NYDESGGPSK IEKEEGELSP VGDSEDNFVV YEDRELKATA KTEHSVEAEG ENDEDADDED GDDASEAGED ASGTESIGDE
1001: CSQDDNGVEE EGEHDEIDGK AESEGEAEGM ESHLIEDKGL FPSSERVLLS VKPLSKHIAA AALVDEKKKD SRVFYGNDDF YVLFRLHRIL YERILSAKTY
1101: CSGSEMKLRN TKDTCSPDPY ARFMNALFSL LNGSAENSKF EDECRAIIGN QSYVLFTLEK LIYKLVKQLQ AVVADDMDNK LLQLYEYENS RRPGRVFDSV
1201: YYENARILLH EENIYRLECS SSPSRLSIQL MDNIIEKPDA YAVSMEPTFT SYLQNEFLSN SSGKKELQDI VLQRNMRGYN GLDDLAVACK AMEGVQVING
1301: LECKMSCSSY KISYVLDTED FFHRKKKQKK SNNLSLAKLS QNRIARFHKF LSASR
Arabidopsis Description
SNL2Paired amphipathic helix protein Sin3-like 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFQ3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.