Factsheet for PGSC0003DMT400003545

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 1
cytosol 2
nucleus 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400009871
PGSC0003DMT400016260
PGSC0003DMT400034607
PGSC0003DMT400057590
PGSC0003DMT400060234
PGSC0003DMT400076252	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G01320.1	PGSC0003DMT400057590	AT2G30470.1	19962994
AT3G01320.1	PGSC0003DMT400076252	AT4G38130.1	23371947
AT3G01320.1	PGSC0003DMT400076252	AT4G38130.1	23371947
AT3G01320.1	PGSC0003DMT400009871	AT5G04390.1	19962994
AT3G01320.1	PGSC0003DMT400016260	AT5G13820.1	19962994
AT3G01320.1	PGSC0003DMT400060234	AT5G13820.1	19962994
AT3G01320.1	PGSC0003DMT400034607	AT5G47660.1	19962994

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g087390.1.1	Tomato	cytosol	82.42	82.91
PGSC0003DMT400003540	Potato	nucleus	37.3	47.75
KRH18559	Soybean	nucleus	32.81	35.74
PGSC0003DMT400090159	Potato	cytosol, extracellular, mitochondrion, nucleus	19.14	35.51
PGSC0003DMT400084963	Potato	cytosol	13.67	25.45
PGSC0003DMT400097436	Potato	cytosol	21.88	22.58
PGSC0003DMT400003538	Potato	nucleus	48.44	18.28
VIT_14s0066g02330.t01	Wine grape	nucleus	45.31	16.75
CDX70587	Canola	nucleus	42.58	16.09
Bra006276.1-P	Field mustard	nucleus	42.19	16.05
Bra023501.1-P	Field mustard	nucleus	41.8	16.02
CDX85568	Canola	nucleus	41.8	16.02
CDX78604	Canola	nucleus	42.19	16.0
KRG93437	Soybean	nucleus	43.75	15.98
CDX91007	Canola	nucleus	41.21	15.95
AT5G15020.1	Thale cress	nucleus	41.6	15.58
AT3G01320.1	Thale cress	mitochondrion, nucleus	41.6	15.52
PGSC0003DMT400058222	Potato	nucleus	40.62	15.24
Bra040510.1-P	Field mustard	mitochondrion, nucleus	38.67	14.72
CDY28683	Canola	mitochondrion, nucleus	38.67	14.71
KRH18561	Soybean	nucleus	10.74	6.1

Protein Annotations

Gene3D:1.20.1160.11	EntrezGene:102601531	MapMan:35.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR003822	UniProt:M0ZLW1	InterPro:PAH	InterPro:PAH_sf	PFAM:PF02671
EnsemblPlantsGene:PGSC0003DMG400001399	PGSC:PGSC0003DMG400001399	EnsemblPlants:PGSC0003DMT400003545	PFscan:PS51477	PANTHER:PTHR12346	PANTHER:PTHR12346:SF8
SUPFAM:SSF47762	UniParc:UPI00029485F2	RefSeq:XP_006338502.1	:	:	:

Description

Paired amphipathic helix protein Sin3-like 2 [Source:PGSC_GENE;Acc:PGSC0003DMG400001399]

Coordinates

chr2:+:46627443..46631350

Molecular Weight (calculated)

59942.6 Da

IEP (calculated)

7.186

GRAVY (calculated)

-0.566

Length

512 amino acids

Sequence
(BLAST)

001: MVRLRVDVSG GKERFKRPIN YSRRESHGPS PFLENGALGS RRGLTFLGPC NPHLTTEDAL SYLKEVKDTF QGREKYDMFL DIMKHFKAQR IDTVTVIARV
101: KDLFKGHPRL ITGFNTFLPE GYTITLNQED KPKIEFGEAI NFVNKIKTRF QNDDHVYRYF LDILNMYRKE HKGINEVYRE VAVLFNGHPD LLDEFTRFLP
201: DTKREVDLTK QQHPGKMNSF GEFEDALKYS CSKGFIFCER VKERLQSPAD YMKFLKCLHI YSTETIARNK LQSLVAEILG KYPDLMEGFN EFLDHYDRVD
301: TYTKGFTFCE EVKERLGSPA DYQTFLKCLS DYSGEIITRE QLQSLVAQTL GKHPCLMERF NVFIDRYERA VGFLVGVMTK WNESKLVKEE ENKCKTEAPS
401: TYQVKEETEA PSTYQIKQEN EARPQGIKFE EAASFVEKVK ERFRNDNHVY ESFLNILRMY NMESYDVYHK VAILFKNHSD LLGEFAKFLP DSSADFKLRE
501: RIDQLTILFS SL

Best Arabidopsis Sequence Match ( AT1G70060.1 )
(BLAST)

0001: MVGGSSAQKL TTNDALAYLK AVKDKFQDKR DKYDEFLEVM KDFKAQRVDT TGVILRVKEL FKGNRELILG FNTFLPKGFE ITLRPEDDQP AAPKKPVEFE
0101: EAISFVNKIK TRFQGDDRVY KSFLDILNMY RKENKSITEV YHEVAILFRD HHDLLGEFTH FLPDTSATAS TNDSVKVPVR DRGIKSLPTM RQIDLDKKDR
0201: IITSHPNRAL KTENMDVDHE RSLLKDSKEE VRRIDKKNDF MDDRDRKDYR GLDHDSHKEH FFNSKKKLIR KDDDSAEMSD QAREGDKFSG AIPSSSTYDE
0301: KGHSQELAFV DRVKAKLDTA DNQEFLRCLN LYSKEIISQP ELQSLVSDLI GVYPDLMDAF KVFLAQCDKN DGLLSGIVSK KSLWSEGKCP QPTKSLDKDT
0401: DREREKIERY RERDREKERL EKVAASQKWA KPISELDLSN CEQCTPSYRR LPKNYPIPIA SQKMEIGSQV LNDHWVSVTS GSEDYSFKHM RKNQYEESLF
0501: KCEDDRFELD MLLESVISAT NRVEELLAKI NSNELKTDTP ICIEDHLTAL NLRCIERLYS DHGLDVLDLL KKNAYLALPV ILTRLKQKQE EWARCRTEFN
0601: KVWADIYTKN YHRSLDHRSF YFKQQDSKNL STKALLAEIK EISEKKRGED DALLALAAGN RRTISSNMSF DYPDPDLHED LYQLIKYSCG EMCSTEQLDK
0701: VMKVWTEFLE PIFGVPSRPQ GAEDREDAVK STNHDREDQE DAVSPQNGAS IANSMRSNGP RKVNESNQVR QASELDKDVT SSKTSDALLS CDNTQNDKMP
0801: KNLTTPDERA ETKQAVSIER AHNSNALPLD GLLPQRNGKI SSLSVAGLSN SNPKPALTSG TEELKPNYVN GPRVEIGDNP VIPNGTVAEW FAGEAKVERE
0901: EGELSPTGDF EEDNYAVHGE NDMEALSKSK ENDATADDAS APRSSDGSGN TSHNGDVSGT DSGDGEDCYR EDDIDHNKVE SEGEAEEGMS DGHDDTEGDM
1001: PVLSISVKNL LHVKPLAKYV PPALYDKDND DSRKNSQVFY GNDSFYVLFR LHQILYDRIL SAKINSSSPD RKWKTSNPTN PADSYARIMD ALYNLLDGTS
1101: DNSKFEDDCR AIIGTQSYVL FTLDKLIYKL IKHLQAVAAD EMDNKLQQLY AYEKSRKPEK FLDAVYYENA LVLLPDEDIY RIECEQSTPS KLSIQLLDYG
1201: HDKPDVTSIS MDPTFAAYLH NVFLSYQPNA KENPRIYLKR NKRKNGGDDE LCTTDEVKII NGLECKITCS SSKVSYVLDT EDVLHRAKRR KLLNQSGLPL
1301: AHDSVCSGSL IRQRRTQRYQ KLLTGQ

Arabidopsis Description

SNL4Paired amphipathic helix protein Sin3-like 4 [Source:UniProtKB/Swiss-Prot;Acc:O04539]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.