Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc07g041320.1.1 | Tomato | cytosol | 22.25 | 42.18 |
| Solyc04g025000.1.1 | Tomato | cytosol, mitochondrion, nucleus | 20.25 | 41.97 |
| PGSC0003DMT400003545 | Potato | cytosol, mitochondrion | 47.75 | 37.3 |
| PGSC0003DMT400090159 | Potato | cytosol, extracellular, mitochondrion, nucleus | 23.0 | 33.33 |
| Solyc04g024990.1.1 | Tomato | cytosol | 21.25 | 31.14 |
| CDY55066 | Canola | cytosol | 22.75 | 22.86 |
| PGSC0003DMT400084963 | Potato | cytosol | 13.75 | 20.0 |
| PGSC0003DMT400097436 | Potato | cytosol | 24.75 | 19.96 |
| PGSC0003DMT400003538 | Potato | nucleus | 38.0 | 11.2 |
| PGSC0003DMT400058222 | Potato | nucleus | 33.75 | 9.89 |
| CDY55065 | Canola | nucleus | 7.25 | 4.15 |
Protein Annotations
| Gene3D:1.20.1160.11 | MapMan:35.1 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| InterPro:IPR003822 | UniProt:M0ZLV9 | InterPro:PAH | InterPro:PAH_sf | PFAM:PF02671 | EnsemblPlantsGene:PGSC0003DMG400001398 |
| PGSC:PGSC0003DMG400001398 | EnsemblPlants:PGSC0003DMT400003540 | PFscan:PS51477 | PANTHER:PTHR12346 | PANTHER:PTHR12346:SF8 | SUPFAM:SSF47762 |
| UniParc:UPI000294A56E | SEG:seg | : | : | : | : |
Description
Paired amphipathic helix protein Sin3-like 2 [Source:PGSC_GENE;Acc:PGSC0003DMG400001398]
Coordinates
chr2:+:46635016..46643438
Molecular Weight (calculated)
46163.4 Da
IEP (calculated)
9.123
GRAVY (calculated)
-0.559
Length
400 amino acids
Sequence
(BLAST)
(BLAST)
001: MRRLGGDVCG SSRGESYNQS QFHESGLSEI RDDSRKNSKP EYYDALSYLK EVKDMFSDQA EKYNMFLDVM TDFKRKRIDT VGVIAKIKEL FKGHPRLLLG
101: FNLFLPNGYE IILTDEDKKK TDLEQAISLM NKIKKCLGND YEYKSFINIL SMCKKECKNV EEVNREVAIL LKNHPDLVDE FAKFLVDSSI ANLLSNLDDN
201: KILKNMARLK VQVSASASAN EKLKRPIREL YGQSQFCEGG SGKRGGDRGS VGGNASNPNV TTNDALTYLK EIIKDMFPDQ NRYGKGFTFC EKVKKRLHSP
301: TDYQTFLKCL RFYSRDIVSR QQLQSLVRFQ SDNRVYGSFL AILKMYKEHK NIDKVYHEVA ILFKDHPDLL DDFTKYLPDS SPNVVLKRYM DELTIRFSFL
101: FNLFLPNGYE IILTDEDKKK TDLEQAISLM NKIKKCLGND YEYKSFINIL SMCKKECKNV EEVNREVAIL LKNHPDLVDE FAKFLVDSSI ANLLSNLDDN
201: KILKNMARLK VQVSASASAN EKLKRPIREL YGQSQFCEGG SGKRGGDRGS VGGNASNPNV TTNDALTYLK EIIKDMFPDQ NRYGKGFTFC EKVKKRLHSP
301: TDYQTFLKCL RFYSRDIVSR QQLQSLVRFQ SDNRVYGSFL AILKMYKEHK NIDKVYHEVA ILFKDHPDLL DDFTKYLPDS SPNVVLKRYM DELTIRFSFL
0001: MVGGGSAQKL TTNDALAYLK AVKDKFQDQR GKYDEFLEVM KNFKSQRVDT AGVITRVKEL FKGHQELILG FNTFLPKGFE ITLQPEDGQP PLKKRVEFEE
0101: AISFVNKIKT RFQGDDRVYK SFLDILNMYR RDSKSITEVY QEVAILFRDH SDLLVEFTHF LPDTSATASI PSVKTSVRER GVSLADKKDR IITPHPDHDY
0201: GTEHIDQDRE RPIKKENKEH MRGTNKENEH RDARDFEPHS KKEQFLNKKQ KLHIRGDDPA EISNQSKLSG AVPSSSTYDE KGAMKSYSQD LAIVDRVKEK
0301: LNASEYQEFL RCLNLFSKEI ISRPELQSLV GNLIGVYPDL MDSFIEFLVQ CEKNEGLLSG ILTKSKSTYL LQGEGKYPQP SLDNDRDQEH KRDDGLRDRD
0401: HEKERLEKAA ANLKWAKPIS ELDLSNCEQC TPSYRLLPKN YPISIASQKT EIGKLVLNDH WVSVTSGSED YSFSHMRKNQ YEESLFKCED DRFELDMLLE
0501: SVNSTTKHVE ELLTKINSNE LKTNSPIRVE DHLTALNLRC IERLYGDHGL DVMDVLKKNV SLALPVILTR LKQKQEEWAR CRSDFDKVWA EIYAKNYYKS
0601: LDHRSFYFKQ QDSKKLSMKA LLAEIKEITE KKREDDSLLA FAAGNRLSIS PDLEFDYPDH DLHEDLYQLI KYSCAEMCST EQLDKVMKIW TTFVEQIFGV
0701: PSRPQGAEDQ EDVVKSMNQN VKSGSSSAGE SEGSPHNYAS VADSRRSKSS RKANEHSQLG QTSNSERDGA AGRTSDALCE TAQHEKMLKN VVTSDEKPES
0801: KQAVSIERAH DSTALAVDGL LDQSNGGSSI VHMTGHCNNN LKPVTCGTEL ELKMNDGNGP KLEVGNKKLL TNGIAVEITS DQEMAGTSKV EREEGELSPN
0901: GDFEEDNFAV YAKTDFETFS KANDSTGNNI SGDRSREGEP SCLETRAEND AEGDENAARS SEDSRNEYEN GDVSGTESGG GEDPEDDLDN NNKGESEGEA
1001: ECMADAHDAE ENGSALPVSA RFLLHVKPLV KYVPSAIALH DKDKDSLKNS QVFYGNDSFY VLFRLHRILY ERILSAKVNS SSPEGKWRTS NTKNPTDSYA
1101: RFMTALYNLL DGTSDNAKFE DDCRAIIGTQ SYILFTLDKL IHKFIKHLQV VVADEMDNKL LQLYFYEKSR RPETIFDAVY YDNTRVLLPD ENIYRIECRL
1201: STPAKLSIQL MCNGLDKPDV TSVSIDPTFA AYLHNDFLSI QPNAREDRRI YLNRNKRKVC REDEQLYSTD EVKIKNGLEC KIACGSSKVS YVLETEDLLV
1301: RVKKRRKTLC HNQDSWVRQM RLQYYKNNFL
0101: AISFVNKIKT RFQGDDRVYK SFLDILNMYR RDSKSITEVY QEVAILFRDH SDLLVEFTHF LPDTSATASI PSVKTSVRER GVSLADKKDR IITPHPDHDY
0201: GTEHIDQDRE RPIKKENKEH MRGTNKENEH RDARDFEPHS KKEQFLNKKQ KLHIRGDDPA EISNQSKLSG AVPSSSTYDE KGAMKSYSQD LAIVDRVKEK
0301: LNASEYQEFL RCLNLFSKEI ISRPELQSLV GNLIGVYPDL MDSFIEFLVQ CEKNEGLLSG ILTKSKSTYL LQGEGKYPQP SLDNDRDQEH KRDDGLRDRD
0401: HEKERLEKAA ANLKWAKPIS ELDLSNCEQC TPSYRLLPKN YPISIASQKT EIGKLVLNDH WVSVTSGSED YSFSHMRKNQ YEESLFKCED DRFELDMLLE
0501: SVNSTTKHVE ELLTKINSNE LKTNSPIRVE DHLTALNLRC IERLYGDHGL DVMDVLKKNV SLALPVILTR LKQKQEEWAR CRSDFDKVWA EIYAKNYYKS
0601: LDHRSFYFKQ QDSKKLSMKA LLAEIKEITE KKREDDSLLA FAAGNRLSIS PDLEFDYPDH DLHEDLYQLI KYSCAEMCST EQLDKVMKIW TTFVEQIFGV
0701: PSRPQGAEDQ EDVVKSMNQN VKSGSSSAGE SEGSPHNYAS VADSRRSKSS RKANEHSQLG QTSNSERDGA AGRTSDALCE TAQHEKMLKN VVTSDEKPES
0801: KQAVSIERAH DSTALAVDGL LDQSNGGSSI VHMTGHCNNN LKPVTCGTEL ELKMNDGNGP KLEVGNKKLL TNGIAVEITS DQEMAGTSKV EREEGELSPN
0901: GDFEEDNFAV YAKTDFETFS KANDSTGNNI SGDRSREGEP SCLETRAEND AEGDENAARS SEDSRNEYEN GDVSGTESGG GEDPEDDLDN NNKGESEGEA
1001: ECMADAHDAE ENGSALPVSA RFLLHVKPLV KYVPSAIALH DKDKDSLKNS QVFYGNDSFY VLFRLHRILY ERILSAKVNS SSPEGKWRTS NTKNPTDSYA
1101: RFMTALYNLL DGTSDNAKFE DDCRAIIGTQ SYILFTLDKL IHKFIKHLQV VVADEMDNKL LQLYFYEKSR RPETIFDAVY YDNTRVLLPD ENIYRIECRL
1201: STPAKLSIQL MCNGLDKPDV TSVSIDPTFA AYLHNDFLSI QPNAREDRRI YLNRNKRKVC REDEQLYSTD EVKIKNGLEC KIACGSSKVS YVLETEDLLV
1301: RVKKRRKTLC HNQDSWVRQM RLQYYKNNFL
Arabidopsis Description
SNL3SIN3-like 3 [Source:TAIR;Acc:AT1G24190]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.