CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY31594	Canola	nucleus	95.73	95.97
CDY23529	Canola	cytosol	22.86	57.59
CDY48380	Canola	cytosol	22.61	56.96
CDY64434	Canola	nucleus	8.29	53.23
CDY48381	Canola	cytosol	19.35	49.68
CDY23528	Canola	cytosol	19.35	49.68
CDY06480	Canola	cytosol	26.38	44.49
CDY67989	Canola	nucleus	17.34	44.23
CDY16234	Canola	cytosol, mitochondrion, nucleus	9.55	42.22
CDY14679	Canola	cytosol, mitochondrion, nucleus	9.55	42.22
CDY40291	Canola	cytoskeleton, cytosol, nucleus	8.79	40.7
CDY28457	Canola	cytoskeleton, cytosol, nucleus	8.54	40.48
CDY08302	Canola	cytosol	25.63	39.84
CDY42981	Canola	mitochondrion	15.33	38.12
CDY42979	Canola	cytosol, mitochondrion, nucleus	13.82	37.93
CDY42984	Canola	cytosol, mitochondrion, nucleus	15.08	37.5
CDY66875	Canola	mitochondrion	15.08	37.5
CDY08301	Canola	cytosol	26.13	37.41
Solyc07g041320.1.1	Tomato	cytosol	19.6	36.97
CDY03764	Canola	cytosol	14.82	36.42
Solyc04g025000.1.1	Tomato	cytosol, mitochondrion, nucleus	16.33	33.68
CDY45153	Canola	nucleus	76.88	31.61
Solyc10g047990.1.1	Tomato	cytosol	11.81	31.54
CDY24499	Canola	nucleus	86.43	31.02
Solyc10g047970.1.1	Tomato	cytosol	17.59	30.97
CDY42983	Canola	nucleus	12.56	30.86
Solyc10g048000.1.1	Tomato	endoplasmic reticulum	22.86	30.74
CDY33612	Canola	nucleus	85.68	29.57
PGSC0003DMT400090159	Potato	cytosol, extracellular, mitochondrion, nucleus	19.85	28.62
CDY30912	Canola	nucleus	74.87	28.38
Solyc10g047980.1.1	Tomato	nucleus	15.58	28.31
CDY64433	Canola	cytosol	17.09	25.66
Solyc04g024990.1.1	Tomato	cytosol	17.09	24.91
Solyc11g045320.1.1	Tomato	cytosol	8.79	24.14
CDY37976	Canola	nucleus	58.29	23.48
CDX93425	Canola	nucleus	58.79	23.03
CDY03763	Canola	cytosol	16.33	22.81
PGSC0003DMT400003540	Potato	nucleus	22.86	22.75
PGSC0003DMT400084963	Potato	cytosol	13.82	20.0
CDY42986	Canola	cytosol	10.05	19.14
PGSC0003DMT400097436	Potato	cytosol	23.37	18.75
CDY11625	Canola	nucleus	55.28	17.05
CDY38781	Canola	nucleus	54.52	16.83
CDX68358	Canola	nucleus	54.02	16.74
CDY23527	Canola	nucleus	53.77	16.54
CDY16235	Canola	mitochondrion	13.57	16.07
CDX91007	Canola	nucleus	52.51	15.8
CDX85568	Canola	nucleus	53.02	15.79
CDX70587	Canola	nucleus	53.77	15.79
CDX78604	Canola	nucleus	53.27	15.7
CDY14678	Canola	cytosol	13.32	15.32
CDY28683	Canola	mitochondrion, nucleus	50.75	15.01
CDY28682	Canola	nucleus	24.87	7.99
CDY71516	Canola	cytosol, mitochondrion, nucleus	2.01	3.08
CDY70453	Canola	cytosol	0.75	0.9
CDY31595	Canola	nucleus	0.75	0.43
CDY55065	Canola	nucleus	0.75	0.43

Protein Annotations

Gene3D:1.20.1160.11	MapMan:35.1	GO:A0A078IUI9	UniProt:A0A078IUI9	EnsemblPlants:CDY55066	ProteinID:CDY55066
ProteinID:CDY55066.1	ncoils:Coil	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
EnsemblPlantsGene:GSBRNA2T00015024001	InterPro:HDAC_interact_dom	InterPro:IPR003822	InterPro:PAH	InterPro:PAH_sf	PFAM:PF02671
PFAM:PF08295	PFscan:PS51477	PANTHER:PTHR12346	SMART:SM00761	SUPFAM:SSF47762	UniParc:UPI0004EEED9E
SEG:seg	:	:	:	:	:

Description

BnaCnng28190DBnaCnng28190D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IUI9]

Coordinates

chrLK033374:-:36056..38332

Molecular Weight (calculated)

44997.0 Da

IEP (calculated)

6.365

GRAVY (calculated)

-0.688

Length

398 amino acids

Sequence
(BLAST)

001: MKRVREEVYV EAQTRGQTVS SRGETNGSRP LTIGGGGDMG GLTTNDALSY LKAVKDMFQD KKDKYDTFLE LMKAFKAQRV NTDGVIEKVK ELFKGYDDLL
101: LGFNTFLPKG YRITLPEKKP VAFEEAIDFV NKIKARFGND VRAYRRFLDI LNIYKKEGKS ISSVYQEVTL LFQGHEDLLG EFVSFLPNNS GSGSGSAQHP
201: LSARNALPAM HPMHFDKRMK FGSRPDEYTD QREDGDENLV AAGDSRGKSL NQGQWRQVED NEDGHKNVVF GNGGHKNNMA KGINELDLSD CVQCTPSYRH
301: LPDDYPIPIS SYRNSLGEKV LNDHWVSVTS GSEDYSFKHM RKNQYEESLF RCEDDRFELD MLLESVNAAI KRVETLLEKI NNDTVSTPIC IKDHLSGK

Best Arabidopsis Sequence Match ( AT1G10450.1 )
(BLAST)

0001: MKRAREDVHT DTQKRKPEVS SRGETNKLPR TIDALTYLKA VKDIFHDNKE KYESFLELMK EFKAQTIDTN GVIERIKVLF KGYRDLLLGF NTFLPKGYKI
0101: TLLPEEEKPK IRVDFKDAIG FVTKIKTRFG DDEHAYKRFL DILNLYRKEK KSISEVYEEV TMLFKGHEDL LMEFVNFLPN CPESAPSTKN AVPRHKGTAT
0201: TAMHSDKKRK QRCKLEDYSG HSDQREDGDE NLVTCSADSP VGEGQPGYFR DYENREDTET DTADRTEKSA ASGSQDIGNH KSTTKYVGTP INELDLSECT
0301: QCTPSYRLLP KDYAVEIPSY RNTLGKKTLN DHLVSVTSGS EDYSFSHMRK NQYEESLFRC EDDRYEMDML LGSVSSAIKQ VEILLEKMNN NTISVDSTIC
0401: IEKHLSAMNL RCIERLYGDN GLDVMDLLKK NMHSALPVIL TRLKQKQEEW ARCHSDFQKV WAEVYAKNHH KSLDHRSFYF KQQDSKNLST KCLVAEVKDI
0501: SEKKHQEDLL QAIAVRVMPL FTPDLEFNYC DTQIHEDLYL LIKYYCEEIC ATEQSDKVMK LWITFLEPIF GILSRSQDNL ALEDVSKLKN NRELQDACLA
0601: VKETASGSNR KHPISPKRLS KDNTKMQGSS SREDVSANIK VKTAQPDKLQ DDAAMTNEVI QSSKFVSPKN DQIMEDEGNH MVNAASVEKH ELEEGELSPT
0701: ASREQSNFEV NGQNAFKPLQ KVTDNVRSNK DKQSCDKKGA KNKTRAEDDK QENCHKLSEN NKTASEMLVS GTKVSCHEEN NRVMNCNGRG SVAGEMANGN
0801: QGEDGSFAFS ERFLQTVKPV AKHLSWPLQA SETCSQNDSQ VFYGNDSYYV LFRLHQMLYE RIQTAKKHSE KKWKAADNTT PDSYPRFMDA LYNLLDGSID
0901: NTKFEDECRA IFGAQSYVLF TLDKLVQKFV KHLHSVASDE TDTKLLQLHA YENYRKPGKF FDLVYHENAC ALLHEANIYR IRYSSEGTRL SIQLMNSGNN
1001: QLEVMGVAME PAFADYLQNK CLKSVNDEEN HGLFLNRNKK KFTSLDESRG MPVAMERLNI INEMECRMAC SSSKVKYVAN TSDLLYRSKQ GKPNSRVSEI
1101: LKQRRISRFH IMLNCRLCAL PL

Arabidopsis Description

SNL6Paired amphipathic helix protein Sin3-like 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9XIK6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.