CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08302	Canola	cytosol	91.95	84.77
CDY08301	Canola	cytosol	92.8	78.78
CDY23529	Canola	cytosol	33.05	49.37
CDY48380	Canola	cytosol	32.63	48.73
CDY16234	Canola	cytosol, mitochondrion, nucleus	16.1	42.22
CDY14679	Canola	cytosol, mitochondrion, nucleus	16.1	42.22
CDY48381	Canola	cytosol	27.12	41.29
CDY23528	Canola	cytosol	27.12	41.29
CDY28457	Canola	cytoskeleton, cytosol, nucleus	14.41	40.48
CDY67989	Canola	nucleus	26.69	40.38
CDY40291	Canola	cytoskeleton, cytosol, nucleus	14.41	39.53
CDY42981	Canola	mitochondrion	25.0	36.88
CDY66875	Canola	mitochondrion	24.58	36.25
CDY03764	Canola	cytosol	24.58	35.8
CDY42984	Canola	cytosol, mitochondrion, nucleus	23.73	35.0
CDY42979	Canola	cytosol, mitochondrion, nucleus	21.19	34.48
CDY42983	Canola	nucleus	19.07	27.78
CDY31594	Canola	nucleus	44.92	26.7
CDY55066	Canola	cytosol	44.49	26.38
CDY03763	Canola	cytosol	24.15	20.0
CDY42986	Canola	cytosol	14.83	16.75
CDY64433	Canola	cytosol	18.64	16.6
CDY16235	Canola	mitochondrion	22.88	16.07
CDY14678	Canola	cytosol	22.03	15.03
CDY37976	Canola	nucleus	53.81	12.85
CDX93425	Canola	nucleus	54.66	12.7
CDY45153	Canola	nucleus	50.85	12.4
AT1G10450.3	Thale cress	endoplasmic reticulum, plastid	55.51	11.17
CDY30912	Canola	nucleus	48.73	10.95
KRH45776	Soybean	nucleus	41.95	10.74
CDY24499	Canola	nucleus	47.03	10.01
CDY33612	Canola	nucleus	47.03	9.63
CDY28683	Canola	mitochondrion, nucleus	50.42	8.84
CDX78604	Canola	nucleus	50.42	8.81
CDX85568	Canola	nucleus	49.58	8.76
CDX70587	Canola	nucleus	50.0	8.71
KRG99216	Soybean	nucleus	50.42	8.62
CDY11625	Canola	nucleus	47.03	8.6
CDY38781	Canola	nucleus	46.61	8.53
CDX68358	Canola	nucleus	46.19	8.49
CDX91007	Canola	nucleus	47.46	8.47
KRH45772	Soybean	nucleus	50.0	8.46
PGSC0003DMT400058222	Potato	nucleus	48.31	8.35
CDY23527	Canola	nucleus	45.76	8.35
Solyc05g006540.2.1	Tomato	nucleus	47.88	8.31
CDY71516	Canola	cytosol, mitochondrion, nucleus	2.54	2.31
CDY28682	Canola	nucleus	10.59	2.02
CDY31595	Canola	nucleus	3.81	1.3
CDY55065	Canola	nucleus	3.81	1.29
CDY70453	Canola	cytosol	1.69	1.19
CDY64434	Canola	nucleus	0.0	0.0

Protein Annotations

EnsemblPlants:CDY06480	EnsemblPlantsGene:GSBRNA2T00122561001	Gene3D:1.20.1160.11	GO:A0A078EWP9	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR003822	InterPro:PAH
InterPro:PAH_sf	PANTHER:PTHR12346	PANTHER:PTHR12346:SF8	PFAM:PF02671	PFscan:PS51477	ProteinID:CDY06480
ProteinID:CDY06480.1	SUPFAM:SSF47762	UniParc:UPI0004EF309C	MapMan:35.1	:	:

Description

BnaC06g11640D

Coordinates

chrLK031970:+:677276..678908

Molecular Weight (calculated)

27018.9 Da

IEP (calculated)

6.175

GRAVY (calculated)

-0.537

Length

236 amino acids

Sequence
(BLAST)

001: MRRDREDGYT EVSSRGEING QSPTIRDALH YVSAVRNTFH YDIGKYETFL EVMNDFKAQR DDHNGVIKRI KVLFNGHNDL ILGFNTFLPN EYTITLPLEE
101: EKPKSGVGFQ DAFGFVTKIK ARFSSDEHAY KRFLDILKMY RKERKSIIDV YEEVTILFKG HEDLLVEFLN FLPNCAAISD MLPRHSDKVE NGDEKLVVFS
201: GGNSTGKSLA KEDQDTDRAD KTASSVSQII ASFQRM

Best Arabidopsis Sequence Match ( AT1G10450.1 )
(BLAST)

0001: MKRAREDVHT DTQKRKPEVS SRGETNKLPR TIDALTYLKA VKDIFHDNKE KYESFLELMK EFKAQTIDTN GVIERIKVLF KGYRDLLLGF NTFLPKGYKI
0101: TLLPEEEKPK IRVDFKDAIG FVTKIKTRFG DDEHAYKRFL DILNLYRKEK KSISEVYEEV TMLFKGHEDL LMEFVNFLPN CPESAPSTKN AVPRHKGTAT
0201: TAMHSDKKRK QRCKLEDYSG HSDQREDGDE NLVTCSADSP VGEGQPGYFR DYENREDTET DTADRTEKSA ASGSQDIGNH KSTTKYVGTP INELDLSECT
0301: QCTPSYRLLP KDYAVEIPSY RNTLGKKTLN DHLVSVTSGS EDYSFSHMRK NQYEESLFRC EDDRYEMDML LGSVSSAIKQ VEILLEKMNN NTISVDSTIC
0401: IEKHLSAMNL RCIERLYGDN GLDVMDLLKK NMHSALPVIL TRLKQKQEEW ARCHSDFQKV WAEVYAKNHH KSLDHRSFYF KQQDSKNLST KCLVAEVKDI
0501: SEKKHQEDLL QAIAVRVMPL FTPDLEFNYC DTQIHEDLYL LIKYYCEEIC ATEQSDKVMK LWITFLEPIF GILSRSQDNL ALEDVSKLKN NRELQDACLA
0601: VKETASGSNR KHPISPKRLS KDNTKMQGSS SREDVSANIK VKTAQPDKLQ DDAAMTNEVI QSSKFVSPKN DQIMEDEGNH MVNAASVEKH ELEEGELSPT
0701: ASREQSNFEV NGQNAFKPLQ KVTDNVRSNK DKQSCDKKGA KNKTRAEDDK QENCHKLSEN NKTASEMLVS GTKVSCHEEN NRVMNCNGRG SVAGEMANGN
0801: QGEDGSFAFS ERFLQTVKPV AKHLSWPLQA SETCSQNDSQ VFYGNDSYYV LFRLHQMLYE RIQTAKKHSE KKWKAADNTT PDSYPRFMDA LYNLLDGSID
0901: NTKFEDECRA IFGAQSYVLF TLDKLVQKFV KHLHSVASDE TDTKLLQLHA YENYRKPGKF FDLVYHENAC ALLHEANIYR IRYSSEGTRL SIQLMNSGNN
1001: QLEVMGVAME PAFADYLQNK CLKSVNDEEN HGLFLNRNKK KFTSLDESRG MPVAMERLNI INEMECRMAC SSSKVKYVAN TSDLLYRSKQ GKPNSRVSEI
1101: LKQRRISRFH IMLNCRLCAL PL

Arabidopsis Description

SNL6Paired amphipathic helix protein Sin3-like 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9XIK6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.