Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY31595 | Canola | nucleus | 92.27 | 93.21 |
| CDY24499 | Canola | nucleus | 88.27 | 55.64 |
| CDY33612 | Canola | nucleus | 89.13 | 54.03 |
| CDY30912 | Canola | nucleus | 79.26 | 52.76 |
| CDY45153 | Canola | nucleus | 66.81 | 48.24 |
| CDY70453 | Canola | cytosol | 21.03 | 43.88 |
| CDY71516 | Canola | cytosol, mitochondrion, nucleus | 14.74 | 39.62 |
| CDX93425 | Canola | nucleus | 57.37 | 39.47 |
| CDY37976 | Canola | nucleus | 55.08 | 38.97 |
| CDX68358 | Canola | nucleus | 45.06 | 24.53 |
| CDY23527 | Canola | nucleus | 45.06 | 24.34 |
| CDY11625 | Canola | nucleus | 44.78 | 24.26 |
| CDY38781 | Canola | nucleus | 44.49 | 24.13 |
| CDY28682 | Canola | nucleus | 40.77 | 23.0 |
| CDX91007 | Canola | nucleus | 40.63 | 21.47 |
| CDX78604 | Canola | nucleus | 41.34 | 21.41 |
| CDX70587 | Canola | nucleus | 41.06 | 21.18 |
| CDY28683 | Canola | mitochondrion, nucleus | 40.49 | 21.03 |
| CDX85568 | Canola | nucleus | 39.77 | 20.81 |
| PGSC0003DMT400097436 | Potato | cytosol | 7.15 | 10.08 |
| PGSC0003DMT400003540 | Potato | nucleus | 4.15 | 7.25 |
| Solyc10g047980.1.1 | Tomato | nucleus | 1.86 | 5.94 |
| PGSC0003DMT400084963 | Potato | cytosol | 2.29 | 5.82 |
| CDY08301 | Canola | cytosol | 2.29 | 5.76 |
| CDY08302 | Canola | cytosol | 2.0 | 5.47 |
| Solyc10g048000.1.1 | Tomato | endoplasmic reticulum | 2.0 | 4.73 |
| Solyc10g047970.1.1 | Tomato | cytosol | 1.43 | 4.42 |
| CDY06480 | Canola | cytosol | 1.29 | 3.81 |
| CDY42986 | Canola | cytosol | 0.72 | 2.39 |
| Solyc11g045320.1.1 | Tomato | cytosol | 0.43 | 2.07 |
| CDY42983 | Canola | nucleus | 0.43 | 1.85 |
| Solyc10g047990.1.1 | Tomato | cytosol | 0.29 | 1.34 |
| CDY40291 | Canola | cytoskeleton, cytosol, nucleus | 0.14 | 1.16 |
| CDY64433 | Canola | cytosol | 0.43 | 1.13 |
| CDY14679 | Canola | cytosol, mitochondrion, nucleus | 0.14 | 1.11 |
| CDY16234 | Canola | cytosol, mitochondrion, nucleus | 0.14 | 1.11 |
| Solyc04g024990.1.1 | Tomato | cytosol | 0.43 | 1.1 |
| CDY31594 | Canola | nucleus | 0.43 | 0.76 |
| CDY55066 | Canola | cytosol | 0.43 | 0.75 |
| CDY03763 | Canola | cytosol | 0.29 | 0.7 |
| Solyc07g041320.1.1 | Tomato | cytosol | 0.0 | 0.0 |
| Solyc04g025000.1.1 | Tomato | cytosol, mitochondrion, nucleus | 0.0 | 0.0 |
| PGSC0003DMT400090159 | Potato | cytosol, extracellular, mitochondrion, nucleus | 0.0 | 0.0 |
| CDY48381 | Canola | cytosol | 0.0 | 0.0 |
| CDY67989 | Canola | nucleus | 0.0 | 0.0 |
| CDY66875 | Canola | mitochondrion | 0.0 | 0.0 |
| CDY64434 | Canola | nucleus | 0.0 | 0.0 |
| CDY23528 | Canola | cytosol | 0.0 | 0.0 |
| CDY48380 | Canola | cytosol | 0.0 | 0.0 |
| CDY03764 | Canola | cytosol | 0.0 | 0.0 |
| CDY42984 | Canola | cytosol, mitochondrion, nucleus | 0.0 | 0.0 |
| CDY42981 | Canola | mitochondrion | 0.0 | 0.0 |
| CDY42979 | Canola | cytosol, mitochondrion, nucleus | 0.0 | 0.0 |
| CDY14678 | Canola | cytosol | 0.0 | 0.0 |
| CDY28457 | Canola | cytoskeleton, cytosol, nucleus | 0.0 | 0.0 |
| CDY16235 | Canola | mitochondrion | 0.0 | 0.0 |
| CDY23529 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDY55065 | EnsemblPlantsGene:GSBRNA2T00015023001 | InterPro:Sin3_C | PANTHER:PTHR12346 | PANTHER:PTHR12346:SF21 | PFAM:PF16879 |
| ProteinID:CDY55065 | ProteinID:CDY55065.1 | SEG:seg | UniParc:UPI0004EDAE44 | UniProt:A0A078IZX0 | MapMan:35.1 |
Description
BnaCnng28180DBnaCnng28180D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IZX0]
Coordinates
chrLK033374:-:32570..35917
Molecular Weight (calculated)
79500.6 Da
IEP (calculated)
6.432
GRAVY (calculated)
-0.741
Length
699 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLLKKNSHV ALPVILTRLK QKQEEWARCR FDFRKVWADV YAKNHHKSLD HRSFYFKQQD SKNLSTKGLV AEIKDISDRK HKEDPLHAIA VGTKPSFTPD
101: LEFSYSDTQV HADLYQLIKY YCEEICASEQ SDKVMKLWVT FLEPMFGVPS RSQTSEAMID VAKSKDNQEQ EEACEAVKDS TCDVSVVSNL KLLTPTTTPT
201: KENPTVQGSS VAQETIQQDN LHVGAAMNIE DTQPPKPVSP PRKDLLMEGV ENRSDVVMGE QKVEREEGEL SPTESYEQDS FEVYRDNGVE SVQKLTDNKE
301: KEHKEGAVCT EAGTKSNTLP KDDGNKITQK LSEANENASK DIAAVGKFGG QVSSDEEHKG AMNCDRLRSE DGSSFLTISE RYLQPVKPLA KHVPVKLQVS
401: ENNSPNDSRV FYGNDSCYVL FRLHQMLYER IQSAKIHSER KWKAPDPDNT SPDSYTRFMD ALYNLLDGSS DNTKFEDECR AIIGAQSYVL FTLDKLVQKF
501: VKHLHVVAAD ETDTKLLQLY TYENYRKPGR FFDIVYHENT RALLHDQNIY RIEYSSAQTR LAFQLMNNGN DQPEVTAVTV EPGFANYLQN DFLSLVPDEE
601: RPGLFLKRNK AKMSGPDESS GILRAMEGLK IINEVECKMA CSSSKVKYEP NTSDLLYRRK QKKPNGLDKD KTPSSSEISR KRRLSRFHMC LNRRLAALP
101: LEFSYSDTQV HADLYQLIKY YCEEICASEQ SDKVMKLWVT FLEPMFGVPS RSQTSEAMID VAKSKDNQEQ EEACEAVKDS TCDVSVVSNL KLLTPTTTPT
201: KENPTVQGSS VAQETIQQDN LHVGAAMNIE DTQPPKPVSP PRKDLLMEGV ENRSDVVMGE QKVEREEGEL SPTESYEQDS FEVYRDNGVE SVQKLTDNKE
301: KEHKEGAVCT EAGTKSNTLP KDDGNKITQK LSEANENASK DIAAVGKFGG QVSSDEEHKG AMNCDRLRSE DGSSFLTISE RYLQPVKPLA KHVPVKLQVS
401: ENNSPNDSRV FYGNDSCYVL FRLHQMLYER IQSAKIHSER KWKAPDPDNT SPDSYTRFMD ALYNLLDGSS DNTKFEDECR AIIGAQSYVL FTLDKLVQKF
501: VKHLHVVAAD ETDTKLLQLY TYENYRKPGR FFDIVYHENT RALLHDQNIY RIEYSSAQTR LAFQLMNNGN DQPEVTAVTV EPGFANYLQN DFLSLVPDEE
601: RPGLFLKRNK AKMSGPDESS GILRAMEGLK IINEVECKMA CSSSKVKYEP NTSDLLYRRK QKKPNGLDKD KTPSSSEISR KRRLSRFHMC LNRRLAALP
0001: MKRVREEVYV EPQMRGPTVS SRGETNGRPS TISGGGTTGG LTTVDALTYL KAVKDMFQDN KEKYETFLGV MKDFKAQRVD TNGVIARVKD LFKGYDDLLL
0101: GFNTFLPKGY KITLQPEDEK PKKPVDFQVA IEFVNRIKAR FGGDDRAYKK FLDILNMYRK ETKSINEVYQ EVTLLFQDHE DLLGEFVHFL PDFRGSVSVN
0201: DPLFQRNTIP RDRNSTFPGM HPKHFEKKIK RSRHDEYTEL SDQREDGDEN LVAYSAGNSL GKSLANQGQW PGYPKVEDTE GIQIYESNGG HERDPDIGSQ
0301: KNLLSTNHMA KAINELDLTD CAQCTPSYRR LPDDYPIQIP SYRNSLGEKV LNDHWVSVTS GSEDYSFKHM RKNQYEESLF RCEDDRFELD MLLESVSAAI
0401: KRVESLLEKI NNNTISIETP ICIREHLSEL NLRCIERLYG DYGLDVMDFL KKNSHIALPV ILTRLKQKQE EWARCRADFR KVWAEVYAKN HHKSLDHRSF
0501: YFKQQDSKNL STKGLVAEIK DISERKHKED LLRAIAVGTK PSFTPDVEFI YTDTKVHTDL YKLIKYYCEE ICATEQSDKV MKLWVTFLEP MFGVPSRSET
0601: IETMKDVAKI EDNQEHHDAS EAVKENTCDG SMASNLKPLT PPKMPNKENP MIQGSSFAQD LPVNTGESIQ QDKLHDVAAI TNEDSQPSKL VSTRNDLIME
0701: GVENRSRVSD VSMGGHKVER EEGELSPTES CEQENFEVYK ENGLEPVQKL PDNEISNTDR EPKEGACGTE AVTRSNALPE DDDNKITQKL SEGDENASKF
0801: IVSASKFGGQ VSSDEEHKGA ESENEAGGMV NSNEGEDGSF FTFSERYLQP VKPLAKHVPG TLQASECDTR NDSRVFYGND SLYVLFRLHQ MLYERIQSAK
0901: IHSERKWKAP DSTSTDSYTR FMEALYNLLD GSSDNTKFED ECRAIIGAQS YVLFTLDKLV QKFVKHLHAV AADETDTKLL QLYAYENYRK PGRFFDIVYH
1001: ENARALLHDQ NIYRIEYSSA QTRLGIQLMN SWNDQPEVTA VTVEPGFANY LQNDFLSFVS DEEKPGLFLK RNKAKLSGPG EESLGMSRAL EGLNIINEVE
1101: CKIACSSFKV KYEPHTADLL YRRKQKKATL NPTGPENVKT SDSSELSRKK RISRFHMSLN RRLVALP
0101: GFNTFLPKGY KITLQPEDEK PKKPVDFQVA IEFVNRIKAR FGGDDRAYKK FLDILNMYRK ETKSINEVYQ EVTLLFQDHE DLLGEFVHFL PDFRGSVSVN
0201: DPLFQRNTIP RDRNSTFPGM HPKHFEKKIK RSRHDEYTEL SDQREDGDEN LVAYSAGNSL GKSLANQGQW PGYPKVEDTE GIQIYESNGG HERDPDIGSQ
0301: KNLLSTNHMA KAINELDLTD CAQCTPSYRR LPDDYPIQIP SYRNSLGEKV LNDHWVSVTS GSEDYSFKHM RKNQYEESLF RCEDDRFELD MLLESVSAAI
0401: KRVESLLEKI NNNTISIETP ICIREHLSEL NLRCIERLYG DYGLDVMDFL KKNSHIALPV ILTRLKQKQE EWARCRADFR KVWAEVYAKN HHKSLDHRSF
0501: YFKQQDSKNL STKGLVAEIK DISERKHKED LLRAIAVGTK PSFTPDVEFI YTDTKVHTDL YKLIKYYCEE ICATEQSDKV MKLWVTFLEP MFGVPSRSET
0601: IETMKDVAKI EDNQEHHDAS EAVKENTCDG SMASNLKPLT PPKMPNKENP MIQGSSFAQD LPVNTGESIQ QDKLHDVAAI TNEDSQPSKL VSTRNDLIME
0701: GVENRSRVSD VSMGGHKVER EEGELSPTES CEQENFEVYK ENGLEPVQKL PDNEISNTDR EPKEGACGTE AVTRSNALPE DDDNKITQKL SEGDENASKF
0801: IVSASKFGGQ VSSDEEHKGA ESENEAGGMV NSNEGEDGSF FTFSERYLQP VKPLAKHVPG TLQASECDTR NDSRVFYGND SLYVLFRLHQ MLYERIQSAK
0901: IHSERKWKAP DSTSTDSYTR FMEALYNLLD GSSDNTKFED ECRAIIGAQS YVLFTLDKLV QKFVKHLHAV AADETDTKLL QLYAYENYRK PGRFFDIVYH
1001: ENARALLHDQ NIYRIEYSSA QTRLGIQLMN SWNDQPEVTA VTVEPGFANY LQNDFLSFVS DEEKPGLFLK RNKAKLSGPG EESLGMSRAL EGLNIINEVE
1101: CKIACSSFKV KYEPHTADLL YRRKQKKATL NPTGPENVKT SDSSELSRKK RISRFHMSLN RRLVALP
Arabidopsis Description
SNL5SIN3-like 5 [Source:UniProtKB/TrEMBL;Acc:F4IEM8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.