CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY31594	Canola	nucleus	53.23	8.31
CDY55066	Canola	cytosol	53.23	8.29
CDX91007	Canola	nucleus	80.65	3.78
CDX70587	Canola	nucleus	82.26	3.76
CDX85568	Canola	nucleus	80.65	3.74
CDX78604	Canola	nucleus	80.65	3.7
CDY28682	Canola	nucleus	70.97	3.55
CDY30912	Canola	nucleus	56.45	3.33
CDY45153	Canola	nucleus	51.61	3.31
CDX93425	Canola	nucleus	51.61	3.15
CDY37976	Canola	nucleus	50.0	3.14
CDY28683	Canola	mitochondrion, nucleus	67.74	3.12
CDY24499	Canola	nucleus	54.84	3.07
CDY33612	Canola	nucleus	54.84	2.95
CDX68358	Canola	nucleus	58.06	2.8
CDY11625	Canola	nucleus	58.06	2.79
CDY23527	Canola	nucleus	58.06	2.78
CDY38781	Canola	nucleus	56.45	2.72
CDY03763	Canola	cytosol	4.84	1.05
CDY23528	Canola	cytosol	1.61	0.65
CDY48381	Canola	cytosol	1.61	0.65
CDY08301	Canola	cytosol	1.61	0.36
AT5G15025.1	Thale cress	cytosol, nucleus, peroxisome	0.0	0.0
CDY42984	Canola	cytosol, mitochondrion, nucleus	0.0	0.0
CDY42986	Canola	cytosol	0.0	0.0
CDY48380	Canola	cytosol	0.0	0.0
CDY55065	Canola	nucleus	0.0	0.0
CDY40291	Canola	cytoskeleton, cytosol, nucleus	0.0	0.0
CDY64433	Canola	cytosol	0.0	0.0
CDY66875	Canola	mitochondrion	0.0	0.0
CDY67989	Canola	nucleus	0.0	0.0
CDY70453	Canola	cytosol	0.0	0.0
CDY71516	Canola	cytosol, mitochondrion, nucleus	0.0	0.0
CDY42983	Canola	nucleus	0.0	0.0
CDY42981	Canola	mitochondrion	0.0	0.0
CDY42979	Canola	cytosol, mitochondrion, nucleus	0.0	0.0
CDY16234	Canola	cytosol, mitochondrion, nucleus	0.0	0.0
CDY03764	Canola	cytosol	0.0	0.0
CDY06480	Canola	cytosol	0.0	0.0
CDY31595	Canola	nucleus	0.0	0.0
CDY08302	Canola	cytosol	0.0	0.0
CDY14678	Canola	cytosol	0.0	0.0
CDY28457	Canola	cytoskeleton, cytosol, nucleus	0.0	0.0
CDY14679	Canola	cytosol, mitochondrion, nucleus	0.0	0.0
CDY23529	Canola	cytosol	0.0	0.0
CDY16235	Canola	mitochondrion	0.0	0.0

Protein Annotations

EnsemblPlants:CDY64434	EnsemblPlantsGene:GSBRNA2T00041226001	InterPro:HDAC_interact_dom	ncoils:Coil	PANTHER:PTHR12346	PANTHER:PTHR12346:SF21
PFAM:PF08295	ProteinID:CDY64434	ProteinID:CDY64434.1	SMART:SM00761	UniParc:UPI0004EF2F64	UniProt:A0A078JAB8
MapMan:35.1	:	:	:	:	:

Description

BnaCnng43900DBnaCnng43900D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JAB8]

Coordinates

chrLK034463:+:22635..22896

Molecular Weight (calculated)

7269.6 Da

IEP (calculated)

4.293

GRAVY (calculated)

-0.605

Length

62 amino acids

Sequence
(BLAST)

1: MRRNRYEESL FKCEDDRFEL DMLLESAESA AKRGEELLNS IIEKKISLEE GSFLVEDHFT GL

Best Arabidopsis Sequence Match ( AT5G15020.2 )
(BLAST)

0001: MKRIRDDIYA TGSQFKRPLG SSRGESYEQS PITGGGSIGE GGINTQKLTT DDALTYLKEV KEMFQDQRDK YDMFLEVMKD FKAQKTDTSG VISRVKELFK
0101: GHNNLIFGFN TFLPKGFEIT LDDVEAPSKK TVEFEEAISF VNKIKTRFQH NELVYKSFLE ILNMYRKDNK DITEVYNEVS TLFEDHSDLL EEFTRFLPDS
0201: LAPHTEAQLL RSQAQRYDDR GSGPPLVRRM FMEKDRRRER TVASRGDRDH SVDRSDLNDD KSMVKMHRDQ RKRVDKDNRE RRSRDLEDGE AEQDNLQHFS
0301: EKRKSSRRME GFEAYSGPAS HSEKNNLKSM YNQAFLFCEK VKERLCSQDD YQAFLKCLNM FSNGIIQRKD LQNLVSDVLG KFPDLMDEFN QFFERCESID
0401: GFQHLAGVMS KKSLGSEENL SRSVKGEEKD REHKRDVEAA KEKERSKDKY MGKSIQELDL SDCERCTPSY RLLPPDYPIP SVRHRQKSGA AVLNDHWVSV
0501: TSGSEDYSFK HMRRNQYEES LFRCEDDRFE LDMLLESVGS AAKSAEELLN IIIDKKISFE GSFRIEDHFT ALNLRCIERL YGDHGLDVTD LIRKNPAAAL
0601: PVILTRLKQK QDEWTKCREG FNVVWADVYA KNHYKSLDHR SFYFKQQDSK NLSAKALVSE VKDLKEKSQK EDDVVLSISA GYRQPIIPHL EYDYLDRAIH
0701: EDLFKLVQFS CEEICSTKEQ TGKVLKLWAN FLELMLDVAP RAKGSDSVED VVETQHQRAF TSGEANESSD AISLVSRQLK FATNGDVHAS SGVSKHGETG
0801: LLNRDSSGKE NLKDGDLANK DVATCAEKPQ KDQEIGNGAA KRSGDVDERV ATSSSSFPSG VENNNGKVGS RDSSGSRGIL SKPSEAIDKV DSIQHTQGVD
0901: IGRIIVLGNG LQSDTSKANS NYDESGGPSK IEKEEGELSP VGDSEDNFVV YEDRELKATA KTEHSVEAEG ENDEDADDED GDDASEAGED ASGTESIGDE
1001: CSQDDNGVEE EGEHDEIDGK AESEGEAEGM ESHLIEDKGL FPSSERVLLS VKPLSKHIAA AALVDEKKKD SRVFYGNDDF YVLFRLHRIL YERILSAKTY
1101: CSGSEMKLRN TKDTCSPDPY ARFMNALFSL LNGSAENSKF EDECRAIIGN QSYVLFTLEK LIYKLVKQLQ AVVADDMDNK LLQLYEYENS RRPGRVFDSV
1201: YYENARILLH EENIYRLECS SSPSRLSIQL MDNIIEKPDA YAVSMEPTFT SYLQNEFLSN SSGKKELQDI VLQRNMRGYN GLDDLAVACK AMEGVQVING
1301: LECKMSCSSY KISYVLDTED FFHRKKKQKK SNNLSLAKLS QNRIARFHKF LSASR

Arabidopsis Description

SNL2Paired amphipathic helix protein Sin3-like 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFQ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.