Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra035418.1-P | Field mustard | nucleus | 93.58 | 97.47 |
| CDY24499 | Canola | nucleus | 93.15 | 96.84 |
| CDY55065 | Canola | nucleus | 54.03 | 89.13 |
| CDY31595 | Canola | nucleus | 52.91 | 88.15 |
| CDY31594 | Canola | nucleus | 29.75 | 86.4 |
| CDY55066 | Canola | cytosol | 29.57 | 85.68 |
| CDY30912 | Canola | nucleus | 73.46 | 80.67 |
| CDY45153 | Canola | nucleus | 64.87 | 77.27 |
| AT1G59890.2 | Thale cress | nucleus | 76.24 | 75.32 |
| CDY37976 | Canola | nucleus | 55.68 | 64.98 |
| CDX93425 | Canola | nucleus | 57.07 | 64.76 |
| CDY23529 | Canola | cytosol | 7.98 | 58.23 |
| CDY48380 | Canola | cytosol | 7.98 | 58.23 |
| CDY64434 | Canola | nucleus | 2.95 | 54.84 |
| CDY48381 | Canola | cytosol | 6.68 | 49.68 |
| CDY23528 | Canola | cytosol | 6.68 | 49.68 |
| CDY06480 | Canola | cytosol | 9.63 | 47.03 |
| CDY67989 | Canola | nucleus | 6.16 | 45.51 |
| CDY71516 | Canola | cytosol, mitochondrion, nucleus | 10.23 | 45.38 |
| CDY08302 | Canola | cytosol | 10.06 | 45.31 |
| CDY70453 | Canola | cytosol | 12.75 | 43.88 |
| KRG99216 | Soybean | nucleus | 52.21 | 43.59 |
| CDY08301 | Canola | cytosol | 10.49 | 43.53 |
| CDY16234 | Canola | cytosol, mitochondrion, nucleus | 3.38 | 43.33 |
| CDY14679 | Canola | cytosol, mitochondrion, nucleus | 3.38 | 43.33 |
| KRH45772 | Soybean | nucleus | 52.3 | 43.23 |
| CDY40291 | Canola | cytoskeleton, cytosol, nucleus | 3.21 | 43.02 |
| CDX68358 | Canola | nucleus | 47.61 | 42.76 |
| CDY23527 | Canola | nucleus | 47.44 | 42.27 |
| CDY11625 | Canola | nucleus | 47.27 | 42.25 |
| CDY38781 | Canola | nucleus | 46.83 | 41.89 |
| CDY28457 | Canola | cytoskeleton, cytosol, nucleus | 3.04 | 41.67 |
| CDY42981 | Canola | mitochondrion | 5.64 | 40.62 |
| CDY66875 | Canola | mitochondrion | 5.55 | 40.0 |
| PGSC0003DMT400058222 | Potato | nucleus | 47.27 | 39.93 |
| Solyc05g006540.2.1 | Tomato | nucleus | 47.01 | 39.85 |
| CDY42984 | Canola | cytosol, mitochondrion, nucleus | 5.46 | 39.38 |
| CDX91007 | Canola | nucleus | 44.75 | 39.0 |
| CDX78604 | Canola | nucleus | 45.53 | 38.89 |
| CDY03764 | Canola | cytosol | 5.46 | 38.89 |
| CDX70587 | Canola | nucleus | 45.62 | 38.82 |
| CDY42979 | Canola | cytosol, mitochondrion, nucleus | 4.86 | 38.62 |
| CDX85568 | Canola | nucleus | 44.58 | 38.47 |
| CDY28683 | Canola | mitochondrion, nucleus | 42.76 | 36.63 |
| CDY42983 | Canola | nucleus | 4.77 | 33.95 |
| CDY28682 | Canola | nucleus | 34.69 | 32.28 |
| KRH45776 | Soybean | nucleus | 25.41 | 31.78 |
| CDY64433 | Canola | cytosol | 6.24 | 27.17 |
| CDY03763 | Canola | cytosol | 6.07 | 24.56 |
| CDY42986 | Canola | cytosol | 4.25 | 23.45 |
| CDY16235 | Canola | mitochondrion | 4.77 | 16.37 |
| CDY14678 | Canola | cytosol | 4.6 | 15.32 |
Protein Annotations
| Gene3D:1.20.1160.11 | MapMan:12.3.2.4.2 | GO:A0A078H813 | UniProt:A0A078H813 | EnsemblPlants:CDY33612 | ProteinID:CDY33612 |
| ProteinID:CDY33612.1 | ncoils:Coil | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| EnsemblPlantsGene:GSBRNA2T00054931001 | InterPro:HDAC_interact_dom | InterPro:IPR003822 | InterPro:PAH | InterPro:PAH_sf | PFAM:PF02671 |
| PFAM:PF08295 | PFAM:PF16879 | PFscan:PS51477 | PANTHER:PTHR12346 | PANTHER:PTHR12346:SF21 | SMART:SM00761 |
| SUPFAM:SSF47762 | InterPro:Sin3_C | UniParc:UPI0004EE4ACB | SEG:seg | : | : |
Description
BnaC01g28430DBnaC01g28430D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H813]
Coordinates
chrLK032318:+:185911..191642
Molecular Weight (calculated)
130629.0 Da
IEP (calculated)
6.390
GRAVY (calculated)
-0.699
Length
1153 amino acids
Sequence
(BLAST)
(BLAST)
0001: MKRVREEVYV EAQTRGQTNG RALTIGGGGG NMGGLTTNDA LSYLKAVKDM FQDKKDKYDT FLALMKDFKA QRVNTDGVIA SVKELFKGYD DLLLGFNTFL
0101: PKGYRITLPE KKPVAFGEAI DFVNKIKARF GDDNRAYKRF LDILNMYRKE GKSISSVYQE VTLLFQGHED LLAEFVNFLP NNSGSGSGSS AVPHDRSSSL
0201: HPMHFNKKIK IGSRLDEYTA HSDQREDGDE NLVAAGNSRG KSLNQGQWPP GEDNEDVVFG QKNNMVKGIN ELDLTDCVQC TPSYRHLPDD YPIPISSYRN
0301: SLGEKVLNDH WVSVTSGSED YSFKHMRKNQ YEESLFRCED DRFELDMLLE SVNAAIKRVE TLLEKINNNT ISTPICIKEH LSVLNLRCIE RLYGDYGLDV
0401: MEILKKNSHI ALPVILTRLK QKQEEWARCR FDFRKVWADV YAKNHHKSLD HRSFYFKQQD SKNLSTKGLV AEIKDISDGK HKEDPLHAIS VGTKPSFTPD
0501: LEFSYSDTQV HADLYQLIKY YCEEICATEQ SDKVMKLWVA FLEPMFGVPS RSQTSEAMID VAKSKDNQEQ HDACEAVKDS TCNVSLVSNL KLITPPTTPN
0601: KENPTVQGSS VAQETIQQDK LHVGAAMNIK DTQPVAPPRK DLLMEGVENR TDVIMGDQKV EREEGELSPT ESFEQDNYEV YRDNGVECLQ KLPDNVGNNK
0701: EQEHKGGAVC TEAKAKSNTL PKDDENKITH ASGSKCGGQV SSDEEHKGAM NCDRLCSVIE SENEAVGMIN ANESEDGSLT FSERYLQPVK PLAKHVPGAL
0801: QVSESNSPND SRVFYGNDSF YVLFRLHQML YERIQSAKIH SERKWKAPDP DNTSPDSYTR FMDALYNLLD GSSDNTKFED ECRALIGAQS YVLFTLDKLV
0901: QKFVKHLHSV AADDTDTKLL QLYTYENYRK PGRFFDIVYH ENARALLHEQ NIYRIEYSSA QTRLAIQLMN NGNDHQPEVT AVTVEPGFAN YLQNDFLSLV
1001: PDEERPGLFL KRNMAKMSGP DESSGMLRAM EGLKIINEVE CKMACSSSKV KYEPNTSDLL YRSKQRKPKV NPDGLDNDKN PGSSETSRKR RISRFHMCLN
1101: RRLAALPLQR GFKHVQVQRL GKPSINKERS KQKRLVAGEE DDTEKYPSYT QLN
0101: PKGYRITLPE KKPVAFGEAI DFVNKIKARF GDDNRAYKRF LDILNMYRKE GKSISSVYQE VTLLFQGHED LLAEFVNFLP NNSGSGSGSS AVPHDRSSSL
0201: HPMHFNKKIK IGSRLDEYTA HSDQREDGDE NLVAAGNSRG KSLNQGQWPP GEDNEDVVFG QKNNMVKGIN ELDLTDCVQC TPSYRHLPDD YPIPISSYRN
0301: SLGEKVLNDH WVSVTSGSED YSFKHMRKNQ YEESLFRCED DRFELDMLLE SVNAAIKRVE TLLEKINNNT ISTPICIKEH LSVLNLRCIE RLYGDYGLDV
0401: MEILKKNSHI ALPVILTRLK QKQEEWARCR FDFRKVWADV YAKNHHKSLD HRSFYFKQQD SKNLSTKGLV AEIKDISDGK HKEDPLHAIS VGTKPSFTPD
0501: LEFSYSDTQV HADLYQLIKY YCEEICATEQ SDKVMKLWVA FLEPMFGVPS RSQTSEAMID VAKSKDNQEQ HDACEAVKDS TCNVSLVSNL KLITPPTTPN
0601: KENPTVQGSS VAQETIQQDK LHVGAAMNIK DTQPVAPPRK DLLMEGVENR TDVIMGDQKV EREEGELSPT ESFEQDNYEV YRDNGVECLQ KLPDNVGNNK
0701: EQEHKGGAVC TEAKAKSNTL PKDDENKITH ASGSKCGGQV SSDEEHKGAM NCDRLCSVIE SENEAVGMIN ANESEDGSLT FSERYLQPVK PLAKHVPGAL
0801: QVSESNSPND SRVFYGNDSF YVLFRLHQML YERIQSAKIH SERKWKAPDP DNTSPDSYTR FMDALYNLLD GSSDNTKFED ECRALIGAQS YVLFTLDKLV
0901: QKFVKHLHSV AADDTDTKLL QLYTYENYRK PGRFFDIVYH ENARALLHEQ NIYRIEYSSA QTRLAIQLMN NGNDHQPEVT AVTVEPGFAN YLQNDFLSLV
1001: PDEERPGLFL KRNMAKMSGP DESSGMLRAM EGLKIINEVE CKMACSSSKV KYEPNTSDLL YRSKQRKPKV NPDGLDNDKN PGSSETSRKR RISRFHMCLN
1101: RRLAALPLQR GFKHVQVQRL GKPSINKERS KQKRLVAGEE DDTEKYPSYT QLN
0001: MKRVREEVYV EPQMRGPTVS SRGETNGRPS TISGGGTTGG LTTVDALTYL KAVKDMFQDN KEKYETFLGV MKDFKAQRVD TNGVIARVKD LFKGYDDLLL
0101: GFNTFLPKGY KITLQPEDEK PKKPVDFQVA IEFVNRIKAR FGGDDRAYKK FLDILNMYRK ETKSINEVYQ EVTLLFQDHE DLLGEFVHFL PDFRGSVSVN
0201: DPLFQRNTIP RDRNSTFPGM HPKHFEKKIK RSRHDEYTEL SDQREDGDEN LVAYSAGNSL GKSLANQGQW PGYPKVEDTE GIQIYESNGG HERDPDIGSQ
0301: KNLLSTNHMA KAINELDLTD CAQCTPSYRR LPDDYPIQIP SYRNSLGEKV LNDHWVSVTS GSEDYSFKHM RKNQYEESLF RCEDDRFELD MLLESVSAAI
0401: KRVESLLEKI NNNTISIETP ICIREHLSEL NLRCIERLYG DYGLDVMDFL KKNSHIALPV ILTRLKQKQE EWARCRADFR KVWAEVYAKN HHKSLDHRSF
0501: YFKQQDSKNL STKGLVAEIK DISERKHKED LLRAIAVGTK PSFTPDVEFI YTDTKVHTDL YKLIKYYCEE ICATEQSDKV MKLWVTFLEP MFGVPSRSET
0601: IETMKDVAKI EDNQEHHDAS EAVKENTCDG SMASNLKPLT PPKMPNKENP MIQGSSFAQD LPVNTGESIQ QDKLHDVAAI TNEDSQPSKL VSTRNDLIME
0701: GVENRSRVSD VSMGGHKVER EEGELSPTES CEQENFEVYK ENGLEPVQKL PDNEISNTDR EPKEGACGTE AVTRSNALPE DDDNKITQKL SEGDENASKF
0801: IVSASKFGGQ VSSDEEHKGA ESENEAGGMV NSNEGEDGSF FTFSERYLQP VKPLAKHVPG TLQASECDTR NDSRVFYGND SLYVLFRLHQ MLYERIQSAK
0901: IHSERKWKAP DSTSTDSYTR FMEALYNLLD GSSDNTKFED ECRAIIGAQS YVLFTLDKLV QKFVKHLHAV AADETDTKLL QLYAYENYRK PGRFFDIVYH
1001: ENARALLHDQ NIYRIEYSSA QTRLGIQLMN SWNDQPEVTA VTVEPGFANY LQNDFLSFVS DEEKPGLFLK RNKAKLSGPG EESLGMSRAL EGLNIINEVE
1101: CKIACSSFKV KYEPHTADLL YRRKQKKATL NPTGPENVKT SDSSELSRKK RISRFHMSLN RRLVALP
0101: GFNTFLPKGY KITLQPEDEK PKKPVDFQVA IEFVNRIKAR FGGDDRAYKK FLDILNMYRK ETKSINEVYQ EVTLLFQDHE DLLGEFVHFL PDFRGSVSVN
0201: DPLFQRNTIP RDRNSTFPGM HPKHFEKKIK RSRHDEYTEL SDQREDGDEN LVAYSAGNSL GKSLANQGQW PGYPKVEDTE GIQIYESNGG HERDPDIGSQ
0301: KNLLSTNHMA KAINELDLTD CAQCTPSYRR LPDDYPIQIP SYRNSLGEKV LNDHWVSVTS GSEDYSFKHM RKNQYEESLF RCEDDRFELD MLLESVSAAI
0401: KRVESLLEKI NNNTISIETP ICIREHLSEL NLRCIERLYG DYGLDVMDFL KKNSHIALPV ILTRLKQKQE EWARCRADFR KVWAEVYAKN HHKSLDHRSF
0501: YFKQQDSKNL STKGLVAEIK DISERKHKED LLRAIAVGTK PSFTPDVEFI YTDTKVHTDL YKLIKYYCEE ICATEQSDKV MKLWVTFLEP MFGVPSRSET
0601: IETMKDVAKI EDNQEHHDAS EAVKENTCDG SMASNLKPLT PPKMPNKENP MIQGSSFAQD LPVNTGESIQ QDKLHDVAAI TNEDSQPSKL VSTRNDLIME
0701: GVENRSRVSD VSMGGHKVER EEGELSPTES CEQENFEVYK ENGLEPVQKL PDNEISNTDR EPKEGACGTE AVTRSNALPE DDDNKITQKL SEGDENASKF
0801: IVSASKFGGQ VSSDEEHKGA ESENEAGGMV NSNEGEDGSF FTFSERYLQP VKPLAKHVPG TLQASECDTR NDSRVFYGND SLYVLFRLHQ MLYERIQSAK
0901: IHSERKWKAP DSTSTDSYTR FMEALYNLLD GSSDNTKFED ECRAIIGAQS YVLFTLDKLV QKFVKHLHAV AADETDTKLL QLYAYENYRK PGRFFDIVYH
1001: ENARALLHDQ NIYRIEYSSA QTRLGIQLMN SWNDQPEVTA VTVEPGFANY LQNDFLSFVS DEEKPGLFLK RNKAKLSGPG EESLGMSRAL EGLNIINEVE
1101: CKIACSSFKV KYEPHTADLL YRRKQKKATL NPTGPENVKT SDSSELSRKK RISRFHMSLN RRLVALP
Arabidopsis Description
SNL5SIN3-like 5 [Source:UniProtKB/TrEMBL;Acc:F4IEM8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.