Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY42979 | Canola | cytosol, mitochondrion, nucleus | 84.57 | 94.48 |
| CDY42981 | Canola | mitochondrion | 93.21 | 94.38 |
| CDY66875 | Canola | mitochondrion | 92.59 | 93.75 |
| CDY42984 | Canola | cytosol, mitochondrion, nucleus | 90.74 | 91.88 |
| CDY42983 | Canola | nucleus | 70.37 | 70.37 |
| CDY67989 | Canola | nucleus | 49.38 | 51.28 |
| CDY42986 | Canola | cytosol | 54.94 | 42.58 |
| CDY03763 | Canola | cytosol | 74.07 | 42.11 |
| CDY23529 | Canola | cytosol | 37.04 | 37.97 |
| CDY48381 | Canola | cytosol | 35.19 | 36.77 |
| CDY23528 | Canola | cytosol | 35.19 | 36.77 |
| CDY48380 | Canola | cytosol | 35.8 | 36.71 |
| AT5G15040.2 | Thale cress | cytoskeleton, cytosol, nucleus | 18.52 | 34.48 |
| CDY14679 | Canola | cytosol, mitochondrion, nucleus | 17.28 | 31.11 |
| CDY16234 | Canola | cytosol, mitochondrion, nucleus | 17.28 | 31.11 |
| CDY28457 | Canola | cytoskeleton, cytosol, nucleus | 15.43 | 29.76 |
| CDY40291 | Canola | cytoskeleton, cytosol, nucleus | 14.81 | 27.91 |
| CDY06480 | Canola | cytosol | 35.8 | 24.58 |
| CDY08302 | Canola | cytosol | 38.27 | 24.22 |
| AT5G15030.1 | Thale cress | endoplasmic reticulum | 19.75 | 23.02 |
| CDY08301 | Canola | cytosol | 37.04 | 21.58 |
| VIT_17s0000g07540.t01 | Wine grape | nucleus | 22.84 | 19.89 |
| CDY31594 | Canola | nucleus | 37.65 | 15.37 |
| CDY55066 | Canola | cytosol | 36.42 | 14.82 |
| CDY16235 | Canola | mitochondrion | 27.78 | 13.39 |
| CDY14678 | Canola | cytosol | 27.16 | 12.72 |
| CDY64433 | Canola | cytosol | 20.37 | 12.45 |
| CDY45153 | Canola | nucleus | 40.74 | 6.82 |
| CDY37976 | Canola | nucleus | 38.27 | 6.28 |
| CDX93425 | Canola | nucleus | 38.89 | 6.2 |
| CDY30912 | Canola | nucleus | 40.12 | 6.19 |
| CDY24499 | Canola | nucleus | 38.89 | 5.68 |
| CDY33612 | Canola | nucleus | 38.89 | 5.46 |
| CDY11625 | Canola | nucleus | 40.12 | 5.04 |
| CDX68358 | Canola | nucleus | 39.51 | 4.98 |
| CDY38781 | Canola | nucleus | 39.51 | 4.97 |
| CDY23527 | Canola | nucleus | 39.51 | 4.95 |
| CDX91007 | Canola | nucleus | 39.51 | 4.84 |
| CDX85568 | Canola | nucleus | 39.51 | 4.79 |
| CDX78604 | Canola | nucleus | 39.51 | 4.74 |
| CDX70587 | Canola | nucleus | 39.51 | 4.72 |
| CDY28683 | Canola | mitochondrion, nucleus | 38.89 | 4.68 |
| CDY71516 | Canola | cytosol, mitochondrion, nucleus | 3.09 | 1.92 |
| CDY28682 | Canola | nucleus | 0.62 | 0.08 |
| CDY55065 | Canola | nucleus | 0.0 | 0.0 |
| CDY31595 | Canola | nucleus | 0.0 | 0.0 |
| CDY64434 | Canola | nucleus | 0.0 | 0.0 |
| CDY70453 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDY03764 | EnsemblPlantsGene:GSBRNA2T00116595001 | Gene3D:1.20.1160.11 | GO:A0A078ET03 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR003822 | InterPro:PAH |
| InterPro:PAH_sf | PANTHER:PTHR12346 | PANTHER:PTHR12346:SF8 | PFAM:PF02671 | PFscan:PS51477 | ProteinID:CDY03764 |
| ProteinID:CDY03764.1 | SEG:seg | SUPFAM:SSF47762 | UniParc:UPI0004EDFC9A | MapMan:35.1 | : |
Description
BnaA02g14730D
Coordinates
chrLK031945:-:1084920..1085879
Molecular Weight (calculated)
19744.9 Da
IEP (calculated)
10.225
GRAVY (calculated)
-0.760
Length
162 amino acids
Sequence
(BLAST)
(BLAST)
001: MIIKRQSTRD IREYLQIVLN RFPDNREIYD KITKLLKDLR LARLRSTYND VISKVSQLFK EHKDLLLGFN KFLPPGYKIT FPKDQTQRRK PEFRDAAEFI
101: NKVKERLQDE HAYKSLLEIF RMYRENKKSL TEVHHEVLYV LRDHQDLRVD FAAFLPARYR ED
101: NKVKERLQDE HAYKSLLEIF RMYRENKKSL TEVHHEVLYV LRDHQDLRVD FAAFLPARYR ED
001: MVANKKLTTT DALDFLHLVK TKYQDNREIY DSFLTIMKDF RGQRAKTCDV ISKVKELFKG QPELLLGFNT FLPTGFEITL SDDELTSNSK FAHFDEAYEF
101: VNKVKTRFQN NDVFNSFLEV LKTHKKENKS VAELYQEVAI LFQGHRDLLE EFHLFLPHYG
101: VNKVKTRFQN NDVFNSFLEV LKTHKKENKS VAELYQEVAI LFQGHRDLLE EFHLFLPHYG
Arabidopsis Description
Paired amphipathic helix (PAH2) superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q84R24]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.