Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY55065 | Canola | nucleus | 93.21 | 92.27 |
| Bra017891.1-P | Field mustard | nucleus | 90.75 | 64.08 |
| CDY24499 | Canola | nucleus | 87.28 | 54.46 |
| CDY33612 | Canola | nucleus | 88.15 | 52.91 |
| CDY30912 | Canola | nucleus | 77.02 | 50.76 |
| AT1G59890.2 | Thale cress | nucleus | 78.9 | 46.79 |
| CDY45153 | Canola | nucleus | 65.17 | 46.59 |
| CDY70453 | Canola | cytosol | 21.39 | 44.18 |
| CDY71516 | Canola | cytosol, mitochondrion, nucleus | 15.03 | 40.0 |
| CDX93425 | Canola | nucleus | 56.65 | 38.58 |
| CDY37976 | Canola | nucleus | 54.34 | 38.06 |
| KRG99216 | Soybean | nucleus | 50.58 | 25.34 |
| KRH45772 | Soybean | nucleus | 50.87 | 25.23 |
| CDX68358 | Canola | nucleus | 45.38 | 24.45 |
| CDY23527 | Canola | nucleus | 45.52 | 24.34 |
| CDY11625 | Canola | nucleus | 45.09 | 24.19 |
| CDY38781 | Canola | nucleus | 44.8 | 24.05 |
| Solyc05g006540.2.1 | Tomato | nucleus | 46.24 | 23.53 |
| PGSC0003DMT400058222 | Potato | nucleus | 46.24 | 23.44 |
| CDY28682 | Canola | nucleus | 41.33 | 23.08 |
| CDX78604 | Canola | nucleus | 42.2 | 21.63 |
| CDX91007 | Canola | nucleus | 41.19 | 21.54 |
| CDX70587 | Canola | nucleus | 41.91 | 21.4 |
| CDY28683 | Canola | mitochondrion, nucleus | 41.04 | 21.1 |
| CDX85568 | Canola | nucleus | 40.46 | 20.96 |
| KRH45776 | Soybean | nucleus | 9.68 | 7.27 |
| CDY08301 | Canola | cytosol | 2.46 | 6.12 |
| CDY08302 | Canola | cytosol | 2.02 | 5.47 |
| CDY06480 | Canola | cytosol | 1.3 | 3.81 |
| CDY42986 | Canola | cytosol | 0.72 | 2.39 |
| CDY42983 | Canola | nucleus | 0.43 | 1.85 |
| CDY40291 | Canola | cytoskeleton, cytosol, nucleus | 0.14 | 1.16 |
| CDY64433 | Canola | cytosol | 0.43 | 1.13 |
| CDY16234 | Canola | cytosol, mitochondrion, nucleus | 0.14 | 1.11 |
| CDY14679 | Canola | cytosol, mitochondrion, nucleus | 0.14 | 1.11 |
| CDY31594 | Canola | nucleus | 0.43 | 0.76 |
| CDY55066 | Canola | cytosol | 0.43 | 0.75 |
| CDY03763 | Canola | cytosol | 0.29 | 0.7 |
| CDY23528 | Canola | cytosol | 0.0 | 0.0 |
| CDY23529 | Canola | cytosol | 0.0 | 0.0 |
| CDY28457 | Canola | cytoskeleton, cytosol, nucleus | 0.0 | 0.0 |
| CDY67989 | Canola | nucleus | 0.0 | 0.0 |
| CDY66875 | Canola | mitochondrion | 0.0 | 0.0 |
| CDY64434 | Canola | nucleus | 0.0 | 0.0 |
| CDY03764 | Canola | cytosol | 0.0 | 0.0 |
| CDY48381 | Canola | cytosol | 0.0 | 0.0 |
| CDY48380 | Canola | cytosol | 0.0 | 0.0 |
| CDY14678 | Canola | cytosol | 0.0 | 0.0 |
| CDY16235 | Canola | mitochondrion | 0.0 | 0.0 |
| CDY42984 | Canola | cytosol, mitochondrion, nucleus | 0.0 | 0.0 |
| CDY42981 | Canola | mitochondrion | 0.0 | 0.0 |
| CDY42979 | Canola | cytosol, mitochondrion, nucleus | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDY31595 | EnsemblPlantsGene:GSBRNA2T00050099001 | InterPro:Sin3_C | PANTHER:PTHR12346 | PANTHER:PTHR12346:SF21 | PFAM:PF16879 |
| ProteinID:CDY31595 | ProteinID:CDY31595.1 | UniParc:UPI0004EE596E | UniProt:A0A078GYR6 | MapMan:35.1 | : |
Description
BnaA03g54570DBnaA03g54570D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GYR6]
Coordinates
chrLK032275:+:2438..5944
Molecular Weight (calculated)
78591.6 Da
IEP (calculated)
6.479
GRAVY (calculated)
-0.714
Length
692 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLLKKSSHV ALPVILTRLK QKQEEWARCR FDFRKVWADV YAKNHHKSLD HRSFYFKQQD SKNLSTKGLV AEIKDISDRK HKEDPLHAIA VGIRPSFTPD
101: LEFSYSDTQV HADLYQLIKY YCEEICASEQ SDKVMKLWVT FLEPIFGVPS RSQTSEAMID AAKSKDNQEQ QDACEAVKDS TCDVSVVSTA HTKENPPVQG
201: NSVAQETILQ DKLHVRAAMD IEDTQPPKPV SPPRKDLLME GVENHSKVSD VIMGEQKVER EEGELSPTES YEQDNYEVYR DNGVESVQKL TDNVGSNKEQ
301: EHKEGAVCME AGAKSNALPK DDGNKITQKL SEANENASGS KFGGHVSSDE EHKGAMKCDR LDSEDGSFLT ISERYLQPVK PLAKHVPVKL QVSESNSPND
401: SRVFYGNDSF YVLFRLHQML YERIQSAKIH SERKWKAPDP DNTSPDSYTR FLDALYNLLD GSSDNTKFED ECRAIIGAQS YVLFTLDKLV QKFVKHLHVV
501: AADETDTKLL QLYTYENYRK PGRFFDIVYH ENARALLHDQ NIYRIEYSSA QTRLAIQLMN NGNDQPEVTA VTVEPGFANY LQNDFLSLLP DEEIPGLFLK
601: RNKAKMSGPD ESSGILRAME GLKIINEVGC KMACSSSKVK YEPNTSDLLY RRKQKKPNGL DKDKTPSSSE ISRKKRLSRF HMCMNRRLAA LP
101: LEFSYSDTQV HADLYQLIKY YCEEICASEQ SDKVMKLWVT FLEPIFGVPS RSQTSEAMID AAKSKDNQEQ QDACEAVKDS TCDVSVVSTA HTKENPPVQG
201: NSVAQETILQ DKLHVRAAMD IEDTQPPKPV SPPRKDLLME GVENHSKVSD VIMGEQKVER EEGELSPTES YEQDNYEVYR DNGVESVQKL TDNVGSNKEQ
301: EHKEGAVCME AGAKSNALPK DDGNKITQKL SEANENASGS KFGGHVSSDE EHKGAMKCDR LDSEDGSFLT ISERYLQPVK PLAKHVPVKL QVSESNSPND
401: SRVFYGNDSF YVLFRLHQML YERIQSAKIH SERKWKAPDP DNTSPDSYTR FLDALYNLLD GSSDNTKFED ECRAIIGAQS YVLFTLDKLV QKFVKHLHVV
501: AADETDTKLL QLYTYENYRK PGRFFDIVYH ENARALLHDQ NIYRIEYSSA QTRLAIQLMN NGNDQPEVTA VTVEPGFANY LQNDFLSLLP DEEIPGLFLK
601: RNKAKMSGPD ESSGILRAME GLKIINEVGC KMACSSSKVK YEPNTSDLLY RRKQKKPNGL DKDKTPSSSE ISRKKRLSRF HMCMNRRLAA LP
0001: MKRVREEVYV EPQMRGPTVS SRGETNGRPS TISGGGTTGG LTTVDALTYL KAVKDMFQDN KEKYETFLGV MKDFKAQRVD TNGVIARVKD LFKGYDDLLL
0101: GFNTFLPKGY KITLQPEDEK PKKPVDFQVA IEFVNRIKAR FGGDDRAYKK FLDILNMYRK ETKSINEVYQ EVTLLFQDHE DLLGEFVHFL PDFRGSVSVN
0201: DPLFQRNTIP RDRNSTFPGM HPKHFEKKIK RSRHDEYTEL SDQREDGDEN LVAYSAESLA NQGQWPGYPK VEDTEGIQIY ESNGGHERDP DIGSQKNLLS
0301: TNHMAKAINE LDLTDCAQCT PSYRRLPDDI PSYRNSLGEK VLNDHWVSVT SGSEDYSFKH MRKNQYEESL FRCEDDRFEL DMLLESVSAA IKRVESLLEK
0401: INNNTISIET PICIREHLSE LNLRCIERLY GDYGLDVMDF LKKNSHIALP VILTRLKQKQ EEWARCRADF RKVWAEVYAK NHHKSLDHRS FYFKQQDSKN
0501: LSTKGLVAEI KDISERKHKE DLLRAIAVGT KPSFTPDVEF IYTDTKVHTD LYKLIKYYCE EICATEQSDK VMKLWVTFLE PMFGVPSRSE TIETMKDVAK
0601: IEDNQEHHDA SEAVKENTCD GSMASNLKPL TPPKMPNKEN PMIQGSSFAQ DLPVNTGESI QQDKLHDVAA ITNEDSQPSK LVSTRNDLIM EGVENRSRVS
0701: DVSMGGHKVE REEGELSPTE SCEQENFEVY KENGLEPVQK LPDNEISNTD REPKEGACGT EAVTRSNALP EDDDNKITQK LSEGDENASK FIVSASKFGG
0801: QVSSDEEHKG AESENEAGGM VNSNEGEDGS FFTFSERYLQ PVKPLAKHVP GTLQASECDT RNDSRVFYGN DSLYVLFRLH QMLYERIQSA KIHSERKWKA
0901: PDSTSTDSYT RFMEALYNLL DGSSDNTKFE DECRAIIGAQ SYVLFTLDKL VQKFVKHLHA VAADETDTKL LQLYAYENYR KPGRFFDIVY HENARALLHD
1001: QNIYRIEYSS AQTRLGIQLM NSWNDQPEVT AVTVEPGFAN YLQNDFLSFV SDEEKPGLFL KRNKAKLSGP GEESLGMSRA LEGLNIINEV ECKIACSSFK
1101: VKYEPHTADL LYRRKQKKAT LNPTGPENVK TSDSSELSRK KRISRFHMSL NRRLVALP
0101: GFNTFLPKGY KITLQPEDEK PKKPVDFQVA IEFVNRIKAR FGGDDRAYKK FLDILNMYRK ETKSINEVYQ EVTLLFQDHE DLLGEFVHFL PDFRGSVSVN
0201: DPLFQRNTIP RDRNSTFPGM HPKHFEKKIK RSRHDEYTEL SDQREDGDEN LVAYSAESLA NQGQWPGYPK VEDTEGIQIY ESNGGHERDP DIGSQKNLLS
0301: TNHMAKAINE LDLTDCAQCT PSYRRLPDDI PSYRNSLGEK VLNDHWVSVT SGSEDYSFKH MRKNQYEESL FRCEDDRFEL DMLLESVSAA IKRVESLLEK
0401: INNNTISIET PICIREHLSE LNLRCIERLY GDYGLDVMDF LKKNSHIALP VILTRLKQKQ EEWARCRADF RKVWAEVYAK NHHKSLDHRS FYFKQQDSKN
0501: LSTKGLVAEI KDISERKHKE DLLRAIAVGT KPSFTPDVEF IYTDTKVHTD LYKLIKYYCE EICATEQSDK VMKLWVTFLE PMFGVPSRSE TIETMKDVAK
0601: IEDNQEHHDA SEAVKENTCD GSMASNLKPL TPPKMPNKEN PMIQGSSFAQ DLPVNTGESI QQDKLHDVAA ITNEDSQPSK LVSTRNDLIM EGVENRSRVS
0701: DVSMGGHKVE REEGELSPTE SCEQENFEVY KENGLEPVQK LPDNEISNTD REPKEGACGT EAVTRSNALP EDDDNKITQK LSEGDENASK FIVSASKFGG
0801: QVSSDEEHKG AESENEAGGM VNSNEGEDGS FFTFSERYLQ PVKPLAKHVP GTLQASECDT RNDSRVFYGN DSLYVLFRLH QMLYERIQSA KIHSERKWKA
0901: PDSTSTDSYT RFMEALYNLL DGSSDNTKFE DECRAIIGAQ SYVLFTLDKL VQKFVKHLHA VAADETDTKL LQLYAYENYR KPGRFFDIVY HENARALLHD
1001: QNIYRIEYSS AQTRLGIQLM NSWNDQPEVT AVTVEPGFAN YLQNDFLSFV SDEEKPGLFL KRNKAKLSGP GEESLGMSRA LEGLNIINEV ECKIACSSFK
1101: VKYEPHTADL LYRRKQKKAT LNPTGPENVK TSDSSELSRK KRISRFHMSL NRRLVALP
Arabidopsis Description
SNL5SIN3-like 5 [Source:UniProtKB/TrEMBL;Acc:F4IEM8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.