Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY31595 | Canola | nucleus | 64.08 | 90.75 |
| Bra035418.1-P | Field mustard | nucleus | 88.06 | 77.96 |
| CDY31594 | Canola | nucleus | 31.33 | 77.33 |
| Bra027831.1-P | Field mustard | nucleus | 58.16 | 76.41 |
| AT1G59890.2 | Thale cress | nucleus | 78.88 | 66.24 |
| Bra019933.1-P | Field mustard | nucleus | 59.08 | 56.99 |
| Bra024645.1-P | Field mustard | cytosol, mitochondrion, nucleus | 4.08 | 44.44 |
| Bra003968.1-P | Field mustard | cytosol | 6.94 | 43.87 |
| Bra012419.1-P | Field mustard | cytosol | 3.78 | 43.02 |
| Bra016241.1-P | Field mustard | nucleus | 50.2 | 38.17 |
| KRG99216 | Soybean | nucleus | 53.67 | 38.09 |
| KRH45772 | Soybean | nucleus | 53.57 | 37.63 |
| Bra003967.1-P | Field mustard | nucleus | 50.41 | 37.57 |
| Bra037065.1-P | Field mustard | nucleus | 8.88 | 36.1 |
| PGSC0003DMT400058222 | Potato | nucleus | 50.0 | 35.9 |
| Solyc05g006540.2.1 | Tomato | nucleus | 49.8 | 35.88 |
| Bra008727.1-P | Field mustard | cytosol | 14.08 | 34.94 |
| Bra006276.1-P | Field mustard | nucleus | 46.33 | 33.73 |
| Bra037066.1-P | Field mustard | nucleus | 9.49 | 33.45 |
| Bra023501.1-P | Field mustard | nucleus | 44.9 | 32.93 |
| Bra040510.1-P | Field mustard | mitochondrion, nucleus | 44.8 | 32.64 |
| KRH45776 | Soybean | nucleus | 26.02 | 27.66 |
| Bra007893.1-P | Field mustard | cytosol | 1.73 | 21.25 |
| Bra007894.1-P | Field mustard | nucleus | 8.67 | 20.19 |
| Bra024644.1-P | Field mustard | mitochondrion | 4.39 | 12.8 |
Protein Annotations
| Gene3D:1.20.1160.11 | MapMan:12.3.2.4.2 | EnsemblPlantsGene:Bra017891 | EnsemblPlants:Bra017891.1 | EnsemblPlants:Bra017891.1-P | ncoils:Coil |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:HDAC_interact_dom | InterPro:IPR003822 |
| UniProt:M4DN04 | InterPro:PAH | InterPro:PAH_sf | PFAM:PF02671 | PFAM:PF08295 | PFAM:PF16879 |
| PFscan:PS51477 | PANTHER:PTHR12346 | PANTHER:PTHR12346:SF21 | SMART:SM00761 | SUPFAM:SSF47762 | InterPro:Sin3_C |
| UniParc:UPI0002540DDE | : | : | : | : | : |
Description
AT1G59890 (E=2e-305) SNL5 | SNL5 (SIN3-LIKE 5)
Coordinates
chrA03:-:31362626..31367740
Molecular Weight (calculated)
111258.0 Da
IEP (calculated)
5.940
GRAVY (calculated)
-0.725
Length
980 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGLTTNDAL SYLKVVKDMF QDKKDKYDTF LALMKDFKAQ RVNTDGVIEK VKELFKGYDD LLLGFNTFLP KGYRITLPEK KPVDFDEAID FVNKIKARFG
101: NDVRAYRRFL DILNMYKTEG KSISTVYQER MKFGSRPDEY TDQREDGDEN LVAAGDSRGK SLNQGQWRQV EDNEDGHENV VFGNGSHKNN MAKGINELDL
201: SDCVQCTPSY RHLPDDYPIP TSSYRNSLGE KVLNDHWVSV TSGSEDYSFK HMRKNQYEES LFRCEDDRFE LDMLLESVNA AIKRVETLLE KINNNTVSTP
301: ICIKDHLSEL NLRCIERLYG DNGLDVMDLL KKSSHVALPV ILTRLKQKQE EWARCRFDFR KVWADVYAKN HHKSLDHRSF YFKQQDSKNL STKGLVAEIK
401: DISDRKHKED PLHAIAVGTR PSFTPDLEFS YSDTQVHADL YQLIKYYCEE ICASEQSDKV MKLWVTFLEP IFGVPSRSQT SEAMIDAAKS KDNQEQQDAC
501: EAVKDSTCDV SVVSNLKLLT PPTAHTKENP PVQGSSVAQE TILQDKLHVR AAMDIEDTQP PKPVSPPRKD LLMEGVENHS KVSDVIMGEQ KVEREEGELS
601: PTESYEQDNY EVYRDNGVES VQKLTDNVGS NKEQEQKEGA VCMEAGAKSN ALPKDDGNKI TQKLSEANEN ASKDIASGSK FGGQVSSNEE HKGAMNCDRL
701: DSEDGSFLTI SERYLQPVKP LAKHVPVKLQ VSESNSPNDS RVFYGNDSFY VLFRLHQMLY ERIQSAKIHS ERKWKAPDPD NTSPDSYTRF LDALYNLLDG
801: SSDNTKFEDE CRAIIGAQSY VLFTLDKLVQ KFVKHSSAQT RLAIQLMNNG SDQPEVTAVT VEPGFANYLQ NDFLSLLPDE ERPGLFLKRN KAKMSGPNES
901: SGILRAMEGL KIINEVECKM ACSSSKVKYE PNTSDLLYRR KQKKPNGLDK DKTPSSSEIS GKRRLSRFHM CMNRRLAALP
101: NDVRAYRRFL DILNMYKTEG KSISTVYQER MKFGSRPDEY TDQREDGDEN LVAAGDSRGK SLNQGQWRQV EDNEDGHENV VFGNGSHKNN MAKGINELDL
201: SDCVQCTPSY RHLPDDYPIP TSSYRNSLGE KVLNDHWVSV TSGSEDYSFK HMRKNQYEES LFRCEDDRFE LDMLLESVNA AIKRVETLLE KINNNTVSTP
301: ICIKDHLSEL NLRCIERLYG DNGLDVMDLL KKSSHVALPV ILTRLKQKQE EWARCRFDFR KVWADVYAKN HHKSLDHRSF YFKQQDSKNL STKGLVAEIK
401: DISDRKHKED PLHAIAVGTR PSFTPDLEFS YSDTQVHADL YQLIKYYCEE ICASEQSDKV MKLWVTFLEP IFGVPSRSQT SEAMIDAAKS KDNQEQQDAC
501: EAVKDSTCDV SVVSNLKLLT PPTAHTKENP PVQGSSVAQE TILQDKLHVR AAMDIEDTQP PKPVSPPRKD LLMEGVENHS KVSDVIMGEQ KVEREEGELS
601: PTESYEQDNY EVYRDNGVES VQKLTDNVGS NKEQEQKEGA VCMEAGAKSN ALPKDDGNKI TQKLSEANEN ASKDIASGSK FGGQVSSNEE HKGAMNCDRL
701: DSEDGSFLTI SERYLQPVKP LAKHVPVKLQ VSESNSPNDS RVFYGNDSFY VLFRLHQMLY ERIQSAKIHS ERKWKAPDPD NTSPDSYTRF LDALYNLLDG
801: SSDNTKFEDE CRAIIGAQSY VLFTLDKLVQ KFVKHSSAQT RLAIQLMNNG SDQPEVTAVT VEPGFANYLQ NDFLSLLPDE ERPGLFLKRN KAKMSGPNES
901: SGILRAMEGL KIINEVECKM ACSSSKVKYE PNTSDLLYRR KQKKPNGLDK DKTPSSSEIS GKRRLSRFHM CMNRRLAALP
0001: MKRVREEVYV EPQMRGPTVS SRGETNGRPS TISGGGTTGG LTTVDALTYL KAVKDMFQDN KEKYETFLGV MKDFKAQRVD TNGVIARVKD LFKGYDDLLL
0101: GFNTFLPKGY KITLQPEDEK PKKPVDFQVA IEFVNRIKAR FGGDDRAYKK FLDILNMYRK ETKSINEVYQ EVTLLFQDHE DLLGEFVHFL PDFRGSVSVN
0201: DPLFQRNTIP RDRNSTFPGM HPKHFEKKIK RSRHDEYTEL SDQREDGDEN LVAYSAGNSL GKSLANQGQW PGYPKVEDTE GIQIYESNGG HERDPDIGSQ
0301: KNLLSTNHMA KAINELDLTD CAQCTPSYRR LPDDYPIQIP SYRNSLGEKV LNDHWVSVTS GSEDYSFKHM RKNQYEESLF RCEDDRFELD MLLESVSAAI
0401: KRVESLLEKI NNNTISIETP ICIREHLSEL NLRCIERLYG DYGLDVMDFL KKNSHIALPV ILTRLKQKQE EWARCRADFR KVWAEVYAKN HHKSLDHRSF
0501: YFKQQDSKNL STKGLVAEIK DISERKHKED LLRAIAVGTK PSFTPDVEFI YTDTKVHTDL YKLIKYYCEE ICATEQSDKV MKLWVTFLEP MFGVPSRSET
0601: IETMKDVAKI EDNQEHHDAS EAVKENTCDG SMASNLKPLT PPKMPNKENP MIQGSSFAQD LPVNTGESIQ QDKLHDVAAI TNEDSQPSKL VSTRNDLIME
0701: GVENRSRVSD VSMGGHKVER EEGELSPTES CEQENFEVYK ENGLEPVQKL PDNEISNTDR EPKEGACGTE AVTRSNALPE DDDNKITQKL SEGDENASKF
0801: IVSASKFGGQ VSSDEEHKGA ESENEAGGMV NSNEGEDGSF FTFSERYLQP VKPLAKHVPG TLQASECDTR NDSRVFYGND SLYVLFRLHQ MLYERIQSAK
0901: IHSERKWKAP DSTSTDSYTR FMEALYNLLD GSSDNTKFED ECRAIIGAQS YVLFTLDKLV QKFVKHLHAV AADETDTKLL QLYAYENYRK PGRFFDIVYH
1001: ENARALLHDQ NIYRIEYSSA QTRLGIQLMN SWNDQPEVTA VTVEPGFANY LQNDFLSFVS DEEKPGLFLK RNKAKLSGPG EESLGMSRAL EGLNIINEVE
1101: CKIACSSFKV KYEPHTADLL YRRKQKKATL NPTGPENVKT SDSSELSRKK RISRFHMSLN RRLVALP
0101: GFNTFLPKGY KITLQPEDEK PKKPVDFQVA IEFVNRIKAR FGGDDRAYKK FLDILNMYRK ETKSINEVYQ EVTLLFQDHE DLLGEFVHFL PDFRGSVSVN
0201: DPLFQRNTIP RDRNSTFPGM HPKHFEKKIK RSRHDEYTEL SDQREDGDEN LVAYSAGNSL GKSLANQGQW PGYPKVEDTE GIQIYESNGG HERDPDIGSQ
0301: KNLLSTNHMA KAINELDLTD CAQCTPSYRR LPDDYPIQIP SYRNSLGEKV LNDHWVSVTS GSEDYSFKHM RKNQYEESLF RCEDDRFELD MLLESVSAAI
0401: KRVESLLEKI NNNTISIETP ICIREHLSEL NLRCIERLYG DYGLDVMDFL KKNSHIALPV ILTRLKQKQE EWARCRADFR KVWAEVYAKN HHKSLDHRSF
0501: YFKQQDSKNL STKGLVAEIK DISERKHKED LLRAIAVGTK PSFTPDVEFI YTDTKVHTDL YKLIKYYCEE ICATEQSDKV MKLWVTFLEP MFGVPSRSET
0601: IETMKDVAKI EDNQEHHDAS EAVKENTCDG SMASNLKPLT PPKMPNKENP MIQGSSFAQD LPVNTGESIQ QDKLHDVAAI TNEDSQPSKL VSTRNDLIME
0701: GVENRSRVSD VSMGGHKVER EEGELSPTES CEQENFEVYK ENGLEPVQKL PDNEISNTDR EPKEGACGTE AVTRSNALPE DDDNKITQKL SEGDENASKF
0801: IVSASKFGGQ VSSDEEHKGA ESENEAGGMV NSNEGEDGSF FTFSERYLQP VKPLAKHVPG TLQASECDTR NDSRVFYGND SLYVLFRLHQ MLYERIQSAK
0901: IHSERKWKAP DSTSTDSYTR FMEALYNLLD GSSDNTKFED ECRAIIGAQS YVLFTLDKLV QKFVKHLHAV AADETDTKLL QLYAYENYRK PGRFFDIVYH
1001: ENARALLHDQ NIYRIEYSSA QTRLGIQLMN SWNDQPEVTA VTVEPGFANY LQNDFLSFVS DEEKPGLFLK RNKAKLSGPG EESLGMSRAL EGLNIINEVE
1101: CKIACSSFKV KYEPHTADLL YRRKQKKATL NPTGPENVKT SDSSELSRKK RISRFHMSLN RRLVALP
Arabidopsis Description
SNL5SIN3-like 5 [Source:UniProtKB/TrEMBL;Acc:F4IEM8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.